genome.fa.s146.2.7.7.80.10.50.1000.56.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  56  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6472702--6472754	26	2.0	26	96	0	97	26	24	20	28	1.99
6471619--6474668	895	3.4	895	94	0	5168	24	25	25	24	2.00
6473597--6473649	26	2.0	26	96	0	97	26	24	20	28	1.99
6474503--6474555	26	2.0	26	92	0	88	28	24	20	26	1.99
6474762--6474826	26	2.5	26	94	0	112	26	24	23	26	2.00
6475659--6475711	26	2.0	26	100	0	106	26	26	20	26	1.99
6476547--6476599	26	2.0	26	92	7	90	30	26	16	26	1.97
6478241--6478295	26	2.1	26	96	0	101	23	25	21	29	1.99
6480943--6480993	26	2.0	26	92	0	84	29	21	19	29	1.98
6477393--6491841	902	16.0	902	77	9	11832	25	25	24	25	2.00
6481845--6481897	26	2.0	26	92	0	88	26	26	20	26	1.99
6482747--6482799	26	2.0	26	96	0	97	28	24	20	26	1.99
6484679--6484731	26	2.0	26	96	0	97	28	26	20	24	1.99
6484705--6491870	878	8.1	878	83	7	7855	25	24	24	25	2.00
6488254--6488305	25	2.0	26	88	3	79	26	28	19	25	1.98
6490035--6490087	26	2.0	26	92	0	88	28	24	18	28	1.98
6491590--6492001	159	2.6	159	82	1	450	18	27	29	24	1.98
6491975--6492026	26	2.0	25	92	3	86	26	23	21	28	1.99
6492001--6493479	718	2.1	712	87	2	2119	26	24	23	25	2.00
6493590--6493642	26	2.0	26	89	7	81	30	22	18	28	1.98
6492717--6495266	898	2.8	899	86	3	3488	26	24	23	25	2.00
6496966--6497018	26	2.0	26	92	0	88	28	28	18	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6497670--6497748	26	3.0	26	96	0	140	30	24	16	29	1.96
6497922--6499926	895	2.2	899	85	4	2635	26	25	23	24	2.00
6500778--6500830	26	2.0	26	92	0	88	30	26	16	26	1.97
6501679--6501734	26	2.2	26	93	0	94	30	23	17	28	1.97
6502577--6502629	26	2.0	26	96	0	97	26	24	22	26	2.00
6504330--6507157	866	3.3	879	81	9	3548	25	24	24	25	2.00
6506787--6506839	26	2.0	26	92	0	88	28	26	16	28	1.97
6507394--6507446	26	2.0	26	96	0	97	26	24	20	28	1.99
6508290--6508342	26	2.0	26	88	0	79	26	28	16	28	1.97
6510073--6510448	159	2.4	159	84	3	472	19	30	28	21	1.98
6510422--6510474	26	2.0	26	92	7	90	26	22	22	28	1.99
6511128--6521597	873	11.8	872	82	6	11332	26	24	23	25	2.00
6514604--6514656	26	2.0	26	96	0	97	26	24	20	28	1.99
6516376--6521593	929	5.7	898	88	2	6750	26	24	23	25	2.00
6519045--6519096	25	2.0	26	92	3	88	25	25	21	28	1.99
6519948--6520023	26	2.9	26	96	0	134	25	28	19	26	1.99
6520877--6520952	26	2.9	26	92	0	125	25	27	19	27	1.99
6521055--6522154	557	2.0	555	90	1	1738	29	22	22	26	1.99
6522353--6522402	25	2.0	26	92	4	84	30	24	18	28	1.97
6523244--6523294	26	2.0	26	96	0	93	29	25	17	27	1.98
6525852--6525902	26	2.0	26	88	0	75	29	21	17	31	1.96
6526739--6526790	26	2.0	26	100	0	104	26	26	19	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6527629--6527681	26	2.0	26	88	0	79	28	20	20	30	1.98
6524982--6532152	904	8.1	899	84	4	8880	25	25	24	25	2.00
6528532--6528581	26	1.9	26	91	0	82	28	26	18	28	1.98
6530302--6530354	26	2.0	26	92	0	88	28	24	18	28	1.98
6532066--6532116	26	2.0	26	96	0	93	29	25	15	29	1.96
6532782--6532839	26	2.3	25	94	5	100	27	27	18	25	1.98
6533671--6533723	26	2.0	26	88	0	79	28	20	20	30	1.98
6534577--6534634	26	2.3	25	94	5	100	27	27	18	25	1.98
6535467--6535519	26	2.0	26	88	0	79	28	20	20	30	1.98
6532154--6537250	890	5.7	891	84	2	6463	25	25	23	25	2.00
6536365--6536418	26	2.1	26	92	0	90	29	24	16	29	1.97
6538981--6539035	26	2.1	27	93	3	94	21	25	18	34	1.96
6537246--6539862	891	2.9	887	88	2	3696	25	25	23	25	2.00
6539836--6539920	28	3.0	28	92	0	143	15	35	27	22	1.94
6540637--6540692	26	2.2	26	93	0	94	26	26	17	28	1.98
6542389--6542441	26	2.0	26	96	0	97	28	26	18	26	1.98
6541532--6545814	901	4.9	891	82	8	5199	25	24	24	25	2.00
6544992--6545041	26	1.9	26	91	0	82	28	28	18	26	1.98
6545818--6556248	871	11.9	870	81	6	10552	25	25	23	25	2.00
6545815--6552715	896	7.8	892	84	5	8091	25	25	24	25	2.00
6556633--6556685	26	2.0	26	100	0	106	26	26	20	26	1.99
6557534--6557586	26	2.0	26	92	0	88	28	24	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6556251--6558572	901	2.6	898	87	2	3275	25	25	24	25	2.00
6558434--6558486	26	2.0	26	96	0	97	26	24	20	28	1.99
6558615--6558666	26	2.0	26	88	0	77	30	23	17	28	1.97
6563567--6564028	167	2.8	167	80	5	487	22	27	31	17	1.97
6564617--6564672	26	2.2	26	96	0	103	26	17	25	30	1.97
6566375--6566426	26	2.0	26	96	0	95	28	17	26	26	1.97
6563747--6576664	890	14.6	871	82	6	13618	25	23	25	25	2.00
6567266--6567316	26	2.0	26	88	0	75	29	13	27	29	1.94
6568176--6568225	26	1.9	26	100	0	100	28	20	30	22	1.98
6566351--6576664	894	11.7	895	82	5	11693	25	23	25	25	2.00
6569059--6569111	26	2.0	26	92	0	88	26	24	24	24	2.00
6569959--6570009	26	2.0	26	92	0	84	31	21	21	25	1.98
6566358--6571607	886	5.9	892	85	2	6568	25	23	25	25	2.00
6571711--6571760	26	1.9	26	95	0	91	28	18	26	28	1.98
6574377--6574429	26	2.0	26	88	0	79	30	18	22	28	1.98
6576108--6576158	26	2.0	26	96	0	93	29	17	29	23	1.97
6576846--6576898	26	2.0	26	96	0	97	30	20	24	24	1.99
6580389--6580441	26	2.0	26	88	0	79	28	16	26	28	1.97
6576661--6591102	903	16.3	903	85	4	17561	25	24	24	25	2.00
6583042--6583094	26	2.0	26	92	0	88	30	20	20	28	1.98
6583940--6583991	26	2.0	25	96	3	95	26	21	25	26	1.99
6584838--6584888	26	2.0	26	96	0	93	29	17	23	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6588379--6588431	26	2.0	26	96	0	97	26	18	26	28	1.98
6590153--6590205	26	2.0	26	96	0	97	28	20	24	26	1.99
6591025--6591077	26	2.0	26	96	0	97	26	18	26	28	1.98
6591770--6591820	26	2.0	26	96	0	93	33	17	19	29	1.95
6590391--6591831	745	1.9	745	89	1	2215	25	22	24	27	2.00
6594431--6594486	26	2.2	26	96	0	103	28	23	19	28	1.98
6595177--6595229	26	2.0	26	92	0	88	28	26	16	28	1.97
6593707--6595942	743	3.0	738	90	3	3319	27	23	22	26	2.00
6596074--6596126	26	2.0	26	96	0	97	28	20	20	30	1.98
6597870--6597922	26	2.0	26	88	0	79	28	26	16	28	1.97
6598768--6598820	26	2.0	26	92	0	88	28	28	18	24	1.98
6596977--6599444	888	2.7	888	85	5	3079	26	24	23	25	2.00
6599502--6599554	26	2.0	26	96	0	97	26	24	22	26	2.00
6598758--6600272	745	2.1	733	88	3	2207	27	24	22	25	2.00
6600405--6600457	26	2.0	26	92	0	88	26	22	20	30	1.98
6601304--6601356	26	2.0	26	96	0	97	26	24	20	28	1.99
6599478--6604735	899	5.9	898	86	5	6930	25	25	24	24	2.00
6603071--6603123	26	2.0	26	92	0	88	26	26	18	28	1.98
6604709--6604761	26	2.0	26	100	0	106	26	26	20	26	1.99
6605603--6605655	26	2.0	26	96	0	97	26	24	20	28	1.99
6607377--6607432	26	2.2	26	83	0	67	33	19	17	28	1.95
6608406--6608458	26	2.0	26	100	0	106	26	26	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6609294--6609346	26	2.0	26	100	0	106	26	26	20	26	1.99
6610181--6610233	26	2.0	26	88	0	79	30	22	18	28	1.98
6610872--6611191	170	1.9	171	81	4	396	20	32	26	20	1.97
6611232--6611284	26	2.0	26	96	0	97	28	24	20	26	1.99
6612121--6612173	26	2.0	26	88	0	79	32	26	15	26	1.95
6613024--6613076	26	2.0	26	88	0	79	30	22	18	28	1.98
6610989--6622206	869	12.6	898	87	3	13798	25	25	24	25	2.00
6613927--6613980	26	2.1	26	93	6	92	31	25	16	25	1.97
6614827--6614878	26	2.0	25	96	3	95	26	25	21	26	1.99
6615723--6615775	26	2.0	26	88	0	79	28	20	20	30	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120