genome.fa.s146.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  111  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16386742--16386767	11	2.4	11	100	0	52	30	0	23	46	1.53
16389449--16389540	27	3.2	28	66	26	68	38	13	6	42	1.70
16389450--16389667	120	1.8	118	89	6	343	35	11	7	45	1.69
16389450--16389666	59	3.7	57	81	9	274	35	11	7	45	1.69
16389683--16389707	13	1.9	13	100	0	50	80	8	0	12	0.92
16390678--16390720	20	2.1	21	86	4	61	67	6	4	20	1.33
16390668--16390735	22	3.1	20	81	12	64	64	7	5	22	1.40
16390751--16390780	15	2.0	15	93	0	51	83	0	16	0	0.65
16390859--16390909	3	16.7	3	80	8	50	70	1	0	27	0.98
16390831--16390947	6	19.7	6	74	11	80	75	2	3	18	1.06
16390879--16390942	15	3.9	15	74	18	56	78	4	1	15	1.00
16391111--16391142	13	2.4	14	94	5	57	3	0	6	90	0.53
16391150--16391447	41	7.2	40	82	8	285	38	21	17	22	1.93
16391150--16391446	83	3.6	82	83	7	325	38	21	17	22	1.93
16391174--16391447	124	2.2	124	86	3	379	39	21	16	22	1.91
16391734--16391817	43	2.0	43	83	6	109	39	15	7	38	1.75
16393111--16393190	20	4.2	19	73	12	67	6	16	1	76	1.05
16397070--16397160	27	3.2	27	66	27	71	38	14	6	40	1.72
16397184--16397288	5	21.6	5	75	16	64	73	1	6	18	1.14
16397184--16397208	13	1.9	13	100	0	50	80	0	0	20	0.72
16397216--16397242	4	6.8	4	100	0	54	77	0	0	22	0.76
16397216--16397320	14	7.1	14	67	24	56	71	4	3	20	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16398160--16398241	21	3.6	22	76	15	69	73	2	4	19	1.13
16398344--16398455	23	5.2	21	71	20	81	76	0	4	17	1.00
16398349--16398462	6	18.7	6	73	18	85	76	0	4	18	1.00
16398344--16398462	29	4.2	26	75	16	96	76	0	4	18	1.00
16398371--16398463	11	8.5	11	75	19	63	76	1	2	20	0.95
16401351--16401399	14	3.4	14	75	10	53	20	0	30	48	1.50
16401359--16401406	16	3.1	16	73	11	55	20	0	31	47	1.50
16401348--16401422	30	2.5	31	84	4	98	21	1	30	46	1.59
16402800--16402871	26	2.8	25	79	10	65	13	1	8	76	1.08
16402826--16402874	19	2.6	19	80	6	55	12	4	8	75	1.16
16404395--16404502	34	3.2	34	79	9	112	37	12	12	37	1.81
16407503--16407750	123	2.0	123	96	0	460	30	18	25	25	1.98
16410743--16410936	97	2.1	92	88	4	280	32	34	8	24	1.86
16413006--16413227	110	2.0	110	97	0	417	39	15	12	31	1.85
16419780--16419811	2	16.0	2	93	0	55	53	0	0	46	1.00
16420759--16420797	2	19.5	2	86	0	51	53	2	0	43	1.14
16423339--16423398	29	2.1	29	90	0	93	50	1	8	40	1.43
16439721--16439746	2	13.0	2	100	0	52	50	0	0	50	1.00
16439769--16439813	21	2.1	21	92	8	74	26	11	8	53	1.65
16442414--16442471	20	3.1	19	81	18	77	48	3	1	46	1.29
16442499--16442571	12	5.5	13	69	23	53	65	0	2	31	1.06
16442499--16442569	30	2.4	29	88	6	99	66	0	2	30	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16443525--16443583	20	3.0	20	71	0	55	52	11	3	32	1.54
16443502--16443577	40	1.9	38	84	5	98	51	9	3	35	1.53
16443714--16443761	24	2.0	25	87	4	71	45	16	4	33	1.67
16443745--16443905	88	1.8	88	82	15	208	56	9	3	30	1.47
16443820--16443931	56	2.0	56	82	3	136	55	9	3	31	1.50
16443874--16443942	36	1.9	36	88	5	104	52	8	5	33	1.56
16443909--16444046	21	6.0	24	66	20	82	55	10	2	31	1.49
16443833--16443973	56	2.5	55	79	9	131	55	9	3	31	1.49
16443907--16444027	47	2.7	46	82	7	149	55	9	2	32	1.46
16443971--16444016	20	2.2	20	84	3	56	56	13	2	28	1.48
16443991--16444041	25	2.0	25	85	7	68	58	11	1	27	1.44
16445820--16445858	12	3.2	12	85	7	53	82	5	10	2	0.93
16446237--16446294	23	2.6	23	88	2	82	37	12	10	39	1.77
16446291--16446333	22	2.0	22	85	0	59	30	23	23	23	1.99
16447592--16447619	14	2.0	14	100	0	56	85	7	0	7	0.73
16448019--16448108	35	2.6	35	80	3	92	24	21	8	45	1.80
16448339--16448423	35	2.4	35	80	3	91	22	20	9	48	1.78
16448589--16448656	35	1.9	35	84	0	91	20	29	11	38	1.88
16449267--16449297	2	16.0	2	93	6	55	48	0	0	51	1.00
16451623--16451670	21	2.3	22	79	17	57	33	12	8	45	1.72
16452099--16452135	17	2.1	18	85	14	51	29	10	13	45	1.77
16459177--16459274	43	2.3	43	94	0	169	28	12	19	39	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16459181--16459251	23	3.2	23	68	11	67	23	12	21	42	1.87
16459549--16459662	24	4.9	23	80	8	124	41	4	14	39	1.66
16459540--16459634	45	2.1	45	88	7	140	43	2	15	38	1.59
16459540--16459666	24	5.6	22	76	12	89	41	3	14	39	1.65
16459537--16459664	69	1.9	66	83	4	166	42	3	14	39	1.65
16459598--16459675	14	6.1	14	66	22	55	41	6	14	38	1.71
16460020--16460070	17	2.9	18	79	5	59	39	15	7	37	1.77
16460027--16460083	17	3.3	17	73	9	53	43	14	7	35	1.72
16460027--16460267	82	2.9	82	74	10	204	39	12	9	39	1.74
16460207--16460279	17	4.2	18	78	7	69	45	15	8	31	1.75
16461479--16461526	20	2.4	20	82	0	60	8	4	6	81	0.98
16462413--16462447	17	2.1	18	89	10	56	62	2	0	34	1.10
16462585--16462618	15	2.3	15	90	5	52	50	11	5	32	1.63
16463696--16463801	30	3.6	30	79	3	117	50	3	5	40	1.44
16464046--16464170	52	2.3	54	83	6	148	42	8	3	45	1.51
16468134--16468174	16	2.3	19	88	12	61	51	0	7	41	1.30
16468966--16469036	2	37.5	2	78	10	60	42	1	7	49	1.38
16468970--16469036	12	5.9	12	79	13	79	41	1	7	49	1.40
16469771--16469796	12	2.2	12	100	0	52	92	0	7	0	0.39
16471025--16471127	26	4.1	26	73	11	90	51	2	1	43	1.27
16475726--16475751	2	13.0	2	100	0	52	50	0	0	50	1.00
16479018--16479096	38	2.1	39	83	4	99	37	2	3	55	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16479200--16479352	62	2.4	63	84	4	193	45	5	3	46	1.42
16479979--16480012	17	1.9	18	94	5	61	38	11	0	50	1.39
16480452--16480476	1	25.0	1	100	0	50	100	0	0	0	0.00
16486540--16486568	4	7.2	4	100	0	58	51	24	0	24	1.48
16493122--16493165	22	2.0	22	90	0	70	38	11	6	43	1.67
16506966--16507001	18	2.1	18	94	5	65	72	0	22	5	1.05
16523979--16524007	2	14.5	2	100	0	58	51	0	0	48	1.00
16524548--16524577	3	10.0	3	92	0	51	0	63	3	33	1.11
16527290--16527333	22	2.0	23	86	4	63	43	2	0	54	1.12
16527285--16527339	22	2.3	24	75	12	60	43	1	3	50	1.30
16535670--16535722	22	2.4	22	80	3	61	54	0	1	43	1.11
16538241--16538293	16	3.1	16	75	8	52	54	0	1	43	1.11
16538731--16538768	19	2.1	18	90	5	58	47	2	0	50	1.15
16542946--16542994	2	24.5	2	100	0	98	51	0	0	48	1.00
16545015--16545049	13	2.7	13	90	0	52	57	2	8	31	1.44
16546029--16546097	19	3.6	19	66	14	52	49	0	1	49	1.09
16546029--16546098	27	2.5	28	80	20	83	50	0	1	48	1.09
16546197--16546256	29	2.1	29	90	0	93	46	5	0	48	1.24
16561658--16561690	13	2.5	13	95	0	57	90	0	9	0	0.44
16567501--16567526	13	2.0	13	100	0	52	84	0	15	0	0.62
16569182--16569229	2	24.5	2	91	4	80	0	52	0	47	1.00
16570079--16570135	17	3.2	18	70	25	57	50	1	7	40	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16570489--16570517	2	15.0	2	92	7	51	48	0	0	51	1.00
16571247--16571368	57	2.1	58	88	5	178	38	7	5	48	1.55
16576324--16576711	192	2.0	192	96	0	722	30	16	20	32	1.94
16589478--16589505	2	14.0	2	100	0	56	50	50	0	0	1.00
16599065--16599093	2	14.5	2	100	0	58	48	0	0	51	1.00
16616438--16616463	2	13.0	2	100	0	52	50	0	0	50	1.00
16619348--16619390	9	4.4	9	78	16	50	32	0	20	46	1.51
16619348--16619426	30	2.5	33	84	13	98	32	2	22	41	1.67
16619367--16619426	31	2.0	30	87	9	86	33	3	21	41	1.70
16619374--16619442	31	2.2	33	84	5	88	36	2	21	39	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120