genome.fa.s146.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  32  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3522609--3522661	26	2.0	26	92	0	88	26	15	28	30	1.96
3523329--3523384	23	2.4	23	100	0	112	23	14	37	25	1.92
3523431--3523539	45	2.4	45	85	0	146	18	32	31	18	1.95
3523783--3523832	25	2.0	25	92	0	82	32	16	24	28	1.96
3524134--3524186	26	2.0	26	92	0	88	26	13	28	32	1.93
3523965--3524356	196	2.0	194	81	5	452	22	28	27	21	1.99
3524896--3525036	45	3.1	44	80	4	165	16	29	34	20	1.94
3525481--3525533	26	2.0	26	96	0	97	30	22	22	24	1.99
3525835--3525887	26	2.0	26	88	0	79	28	15	26	30	1.96
3525677--3526035	196	1.8	196	84	4	492	22	29	27	20	1.99
3526616--3526705	45	2.0	44	82	2	108	18	34	28	17	1.94
3526632--3526785	45	3.4	44	76	3	146	18	31	31	18	1.95
3527548--3527595	25	1.9	25	83	8	62	27	16	29	27	1.97
3529183--3529235	26	2.0	26	100	0	106	26	20	26	26	1.99
3530334--3530519	45	4.1	43	80	6	167	18	32	29	20	1.96
3530334--3530519	90	2.1	90	83	4	232	18	32	29	20	1.96
3531291--3531343	26	2.0	26	92	0	88	24	22	26	26	2.00
3532289--3532493	45	4.6	45	72	4	144	18	29	29	22	1.97
3532289--3532487	90	2.2	90	80	3	222	18	29	30	22	1.97
3532933--3532984	26	2.0	26	92	0	86	32	17	17	32	1.93
3540157--3540366	45	4.7	45	72	7	147	19	33	28	19	1.96
3540808--3540860	26	2.0	26	92	0	88	28	18	24	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3542131--3542351	90	2.4	90	82	3	257	17	32	30	19	1.95
3542177--3542362	45	4.1	45	75	4	160	16	32	31	19	1.94
3543780--3543811	12	2.7	12	95	0	55	34	18	34	12	1.89
3544085--3544190	45	2.4	45	80	3	106	16	32	27	24	1.96
3544175--3544289	45	2.5	46	78	1	124	23	29	26	20	1.99
3544730--3544782	26	2.0	26	85	0	70	32	18	22	26	1.97
3545473--3545591	45	2.6	45	77	0	130	20	31	30	17	1.96
3546039--3546091	26	2.0	26	96	0	97	28	20	24	26	1.99
3547174--3547344	45	3.8	45	75	4	130	20	28	29	21	1.98
3548165--3548217	26	2.0	26	88	0	79	24	16	28	30	1.97
3547994--3548387	196	2.0	196	80	2	441	21	26	28	24	1.99
3550987--3551039	26	2.0	26	88	0	79	24	16	28	30	1.97
3551414--3551446	10	3.3	10	100	0	66	21	9	9	60	1.54
3552773--3552822	26	1.9	26	84	15	68	30	18	28	24	1.97
3553775--3553931	45	3.5	45	75	1	163	18	33	29	18	1.95
3554365--3554420	26	2.2	26	90	0	85	28	21	23	26	1.99
3555815--3555871	26	2.2	26	90	6	89	28	19	24	28	1.98
3556011--3556063	26	2.0	26	88	0	79	26	15	28	30	1.96
3555813--3556166	197	1.8	196	82	2	460	24	26	25	22	2.00
3556721--3556824	45	2.3	45	80	4	111	15	31	32	20	1.93
3556749--3556906	45	3.5	45	80	0	181	17	31	32	18	1.94
3557545--3557595	26	2.0	26	96	0	93	25	19	27	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3558464--3558519	23	2.4	23	96	0	103	23	16	37	23	1.93
3558524--3558717	89	2.2	90	80	6	216	18	33	27	20	1.96
3558592--3558717	45	2.8	44	76	5	128	16	33	29	20	1.95
3559161--3559213	26	2.0	26	92	0	88	28	18	24	28	1.98
3559819--3559957	45	3.1	45	71	6	120	19	32	29	18	1.96
3560405--3560456	26	2.0	26	96	0	95	26	17	23	32	1.96
3560762--3560814	26	2.0	26	92	0	88	24	18	28	28	1.98
3562355--3562407	26	2.0	26	92	0	88	26	18	24	30	1.98
3562711--3562763	26	2.0	26	85	7	72	28	18	24	28	1.98
3563663--3563908	45	5.5	45	72	6	151	18	33	28	19	1.95
3564345--3564397	26	2.0	26	88	0	79	26	18	24	30	1.98
3564701--3564752	26	2.0	26	92	0	86	25	17	28	28	1.97
3566146--3566170	13	1.9	13	100	0	50	24	16	36	24	1.94
3566173--3566410	45	5.3	44	77	5	199	18	32	28	19	1.96
3566181--3566413	90	2.6	89	79	6	238	19	32	28	19	1.96
3567962--3568005	13	3.6	13	76	17	58	25	11	36	27	1.90
3567954--3568009	23	2.4	23	100	0	112	26	14	33	25	1.94
3568064--3568209	45	3.2	44	81	3	166	18	32	31	17	1.94
3568526--3568578	26	2.0	26	88	0	79	26	18	28	26	1.98
3569521--3569627	45	2.4	45	85	3	135	13	29	31	25	1.93
3571098--3571223	45	2.8	45	73	4	119	19	32	28	19	1.96
3571070--3571258	90	2.1	90	80	6	213	19	32	26	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3571186--3571300	45	2.6	45	72	0	104	21	30	25	22	1.99
3571831--3571868	18	2.1	18	100	0	76	34	10	31	23	1.89
3572412--3572464	26	2.0	26	85	0	70	28	16	22	32	1.96
3572813--3572863	26	2.0	26	92	0	84	29	23	23	23	1.99
3573169--3573221	26	2.0	26	92	0	88	26	20	26	26	1.99
3572997--3573376	197	1.9	196	79	2	422	23	30	26	20	1.99
3578206--3578253	25	1.9	25	95	0	87	25	18	29	27	1.98
3578386--3578438	26	2.0	26	85	0	70	28	18	24	28	1.98
3580775--3580827	26	2.0	26	85	0	70	28	18	24	28	1.98
3583600--3583718	44	2.7	45	78	5	134	17	32	33	15	1.92
3584291--3584343	26	2.0	26	96	0	97	28	18	26	26	1.98
3586491--3586543	26	2.0	26	89	7	81	28	18	24	28	1.98
3586321--3586691	195	1.9	195	81	2	449	24	29	25	21	1.99
3587405--3587429	13	1.9	13	100	0	50	24	16	36	24	1.94
3587467--3587577	45	2.5	45	82	2	134	22	33	25	18	1.97
3587848--3588848	482	2.1	478	83	3	1244	23	28	27	21	1.99
3589751--3589864	45	2.5	45	76	1	111	20	33	28	17	1.95
3590382--3590434	26	2.0	26	92	0	88	30	20	22	26	1.98
3592031--3592080	26	1.9	26	91	0	82	32	14	28	26	1.94
3593185--3593398	45	4.8	44	72	6	173	16	33	30	19	1.94
3600955--3601153	45	4.4	45	78	6	197	18	32	30	19	1.96
3600955--3601153	90	2.2	90	82	3	231	18	32	30	19	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3603664--3603716	26	2.0	26	92	0	88	26	16	26	30	1.97
3603843--3604086	90	2.8	89	79	5	228	18	30	29	22	1.97
3603887--3604088	45	4.6	45	79	1	185	17	29	30	22	1.97
3604540--3604592	26	2.0	26	88	0	79	30	16	26	26	1.97
3605947--3606099	45	3.4	44	75	3	126	20	32	28	18	1.96
3606538--3606588	26	2.0	26	96	0	93	29	15	25	29	1.96
3608475--3608526	26	2.0	25	92	3	86	23	17	28	30	1.97
3608757--3608809	26	2.0	26	92	0	88	24	18	28	28	1.98
3609725--3609893	90	1.9	91	82	6	218	18	30	27	22	1.98
3609743--3609917	90	1.9	90	80	4	201	17	30	29	22	1.97
3610358--3610408	26	2.0	26	88	7	77	29	15	27	27	1.96
3612801--3612879	26	3.0	26	83	3	106	27	20	22	29	1.98
3614582--3614736	45	3.4	45	78	1	159	20	35	25	18	1.95
3615578--3615630	26	2.0	26	85	0	70	26	20	26	26	1.99
3615740--3615792	26	2.0	26	92	0	88	28	18	24	28	1.98
3615570--3615880	162	1.9	162	84	1	408	26	25	27	20	1.99
3616099--3616151	26	2.0	26	82	7	63	28	18	22	30	1.98
3617191--3617243	26	2.0	26	96	0	97	24	20	28	26	1.99
3619183--3619235	26	2.0	26	96	0	97	24	16	28	30	1.97
3619335--3619367	12	2.8	12	95	0	57	15	36	21	27	1.93
3621001--3621600	159	3.7	157	72	11	481	23	28	28	20	1.98
3621002--3621685	329	2.1	329	82	3	813	22	28	27	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3622576--3622600	13	1.9	13	100	0	50	24	16	36	24	1.94
3622642--3622757	45	2.6	45	83	2	144	19	32	29	18	1.96
3623810--3623937	45	2.9	44	80	5	123	17	33	28	20	1.96
3623860--3624017	45	3.5	45	78	0	145	18	31	29	20	1.96
3626091--3626333	45	5.4	45	81	2	195	18	33	27	20	1.96
3626131--3626327	90	2.2	90	81	1	216	17	33	27	20	1.96
3627094--3627336	45	5.4	45	72	3	141	19	30	28	21	1.97
3627941--3628108	45	3.7	45	73	0	156	19	29	30	21	1.97
3628383--3628435	26	2.0	26	92	7	90	26	16	26	30	1.97
3628250--3628826	162	3.6	161	74	8	510	25	24	28	21	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120