genome.fa.s146.2.7.7.80.10.50.1000.31.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  31  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3427858--3428060	90	2.3	90	81	5	223	21	26	31	20	1.98
3427898--3428088	90	2.1	90	80	7	210	21	27	31	19	1.97
3429647--3429799	45	3.4	45	78	1	146	18	27	33	20	1.96
3430741--3430791	26	2.0	26	96	0	93	29	29	15	25	1.96
3431796--3431857	30	2.1	30	93	0	106	30	30	29	9	1.89
3431929--3432036	45	2.4	45	84	3	128	22	29	32	15	1.95
3434118--3434168	26	2.0	26	92	7	86	25	15	29	29	1.96
3433948--3434324	196	1.9	196	81	4	456	22	27	27	22	1.99
3435098--3435255	45	3.5	45	76	11	144	17	34	28	19	1.94
3437157--3437209	26	2.0	26	89	7	81	26	16	24	32	1.97
3437513--3437564	25	2.0	26	88	3	79	28	21	23	26	1.99
3438515--3438636	45	2.7	44	72	9	111	20	31	29	18	1.96
3439083--3439135	26	2.0	26	88	0	79	24	18	26	30	1.98
3438912--3439289	195	1.9	196	83	3	485	22	27	26	23	1.99
3440075--3440270	45	4.4	44	75	8	171	18	32	30	18	1.95
3440075--3440270	90	2.2	90	80	5	209	18	32	30	18	1.95
3440719--3440771	26	2.0	26	85	0	70	26	18	24	30	1.98
3441924--3442024	45	2.2	45	79	10	109	21	32	28	16	1.96
3444191--3444243	26	2.0	26	96	0	97	26	18	26	28	1.98
3444547--3444599	26	2.0	26	92	7	90	26	20	26	26	1.99
3445572--3445717	45	3.2	45	75	5	143	17	29	32	19	1.95
3446162--3446212	26	2.0	26	92	0	84	27	15	27	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3446516--3446569	26	2.0	27	85	3	74	25	20	24	29	1.99
3447434--3447458	13	1.9	13	100	0	50	24	16	36	24	1.94
3447491--3447658	90	1.9	90	81	2	203	19	33	27	19	1.96
3447547--3447658	45	2.5	45	76	5	118	22	34	24	18	1.96
3447601--3447705	45	2.3	45	83	0	120	19	31	30	19	1.96
3448146--3448198	26	2.0	26	96	0	97	26	18	26	28	1.98
3454171--3454223	26	2.0	26	89	7	81	26	18	26	28	1.98
3454679--3454729	26	2.0	26	92	0	84	29	17	25	27	1.98
3454702--3454994	158	1.9	157	80	5	349	23	29	28	18	1.98
3455030--3455082	26	2.0	26	89	7	81	24	16	28	30	1.97
3456481--3456533	26	2.0	26	89	7	81	28	18	24	28	1.98
3457125--3457282	45	3.5	45	78	1	129	18	29	31	20	1.97
3457724--3457776	26	2.0	26	92	0	88	28	16	26	28	1.97
3458080--3458132	26	2.0	26	92	0	88	24	15	28	32	1.95
3458925--3458977	26	2.0	26	88	0	79	26	15	28	30	1.96
3460342--3460394	26	2.0	26	85	7	72	24	16	26	32	1.97
3461098--3461131	16	2.2	15	89	5	50	20	47	20	11	1.81
3461766--3461818	26	2.0	26	88	0	79	28	18	22	30	1.98
3462121--3462173	26	2.0	26	92	0	88	26	18	28	26	1.98
3463115--3463271	45	3.5	45	81	0	172	20	33	28	17	1.96
3463103--3463271	89	1.9	90	80	3	198	20	32	28	17	1.96
3463545--3463597	26	2.0	26	92	0	88	28	18	24	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3463570--3463880	159	2.0	159	82	7	391	21	30	29	19	1.97
3463889--3463940	26	2.0	26	84	0	68	25	13	28	32	1.93
3464050--3464102	26	2.0	26	96	0	97	26	18	26	28	1.98
3464850--3465019	45	3.8	44	72	3	133	18	28	31	21	1.97
3465303--3465355	26	2.0	26	96	0	97	28	20	24	26	1.99
3465657--3465708	25	2.0	26	92	3	88	26	21	26	25	1.99
3466638--3466761	44	2.8	45	81	2	133	21	34	28	15	1.94
3467080--3467132	26	2.0	26	92	0	88	28	18	24	28	1.98
3467597--3467649	26	2.0	26	92	0	88	26	20	26	26	1.99
3467043--3468027	516	1.9	517	84	1	1332	23	27	27	21	1.99
3467780--3468160	197	1.9	197	81	3	453	23	28	27	21	1.99
3468871--3468895	13	1.9	13	100	0	50	24	16	36	24	1.94
3469493--3469565	26	2.8	26	85	8	103	30	19	23	27	1.98
3469856--3469908	26	2.0	26	92	0	88	24	18	28	28	1.98
3471498--3471550	26	2.0	26	92	0	88	28	18	24	28	1.98
3471854--3471905	26	2.0	26	88	0	77	26	17	26	28	1.97
3472794--3472818	13	1.9	13	100	0	50	24	16	36	24	1.94
3472821--3473059	45	5.3	45	77	6	216	17	31	30	20	1.96
3472855--3473059	90	2.3	90	81	5	243	18	30	31	20	1.96
3473700--3473752	26	2.0	26	92	0	88	26	20	24	28	1.99
3475670--3475869	90	2.2	89	79	2	211	18	31	31	19	1.95
3475714--3475871	45	3.5	45	82	3	192	18	29	34	17	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3476825--3476987	45	3.6	45	76	4	141	19	32	28	19	1.96
3476880--3477005	45	2.8	45	81	1	153	19	35	27	16	1.94
3478995--3479045	26	2.0	26	92	7	86	25	15	29	29	1.96
3478825--3479201	196	1.9	196	81	4	456	22	27	27	22	1.99
3479982--3480139	45	3.5	44	76	13	151	17	32	29	20	1.95
3480488--3480755	146	1.8	146	81	4	335	22	27	29	20	1.98
3480960--3481011	26	2.0	25	85	3	68	26	15	28	28	1.96
3482031--3482083	26	2.0	26	89	7	81	26	16	24	32	1.97
3482385--3482437	26	2.0	26	89	7	81	28	20	24	26	1.99
3483811--3484185	195	1.9	193	80	7	438	23	27	26	22	2.00
3484969--3485159	45	4.3	44	74	9	154	19	32	28	19	1.96
3485617--3485669	26	2.0	26	92	0	88	28	22	22	26	1.99
3489097--3489149	26	2.0	26	96	0	97	26	18	26	28	1.98
3489452--3489503	26	2.0	26	88	3	79	26	21	25	26	1.99
3489281--3489654	195	1.9	195	79	5	425	24	28	25	21	1.99
3490479--3490594	45	2.6	45	83	0	133	16	27	33	22	1.95
3491046--3491096	26	2.0	26	92	0	84	27	15	27	29	1.96
3491399--3491451	26	2.0	26	88	0	79	24	18	26	30	1.98
3492429--3492540	45	2.5	45	79	5	127	23	34	24	17	1.96
3492483--3492587	45	2.3	45	83	0	120	19	31	30	19	1.96
3493028--3493080	26	2.0	26	100	0	106	30	20	22	26	1.98
3499570--3499620	26	2.0	26	88	0	75	31	17	23	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3499593--3499885	158	1.9	157	80	6	342	22	28	30	18	1.97
3499921--3499973	26	2.0	26	89	7	81	24	16	28	30	1.97
3501372--3501424	26	2.0	26	88	0	79	26	15	28	30	1.96
3501792--3501852	26	2.2	28	80	8	72	26	4	6	62	1.40
3502014--3502177	45	3.6	45	80	3	177	18	30	32	18	1.95
3502615--3502667	26	2.0	26	96	0	97	28	18	26	26	1.98
3502971--3503023	26	2.0	26	88	0	79	24	16	30	28	1.97
3504456--3504574	45	2.6	45	81	0	121	19	30	30	20	1.97
3505234--3505286	26	2.0	26	92	0	88	24	15	28	32	1.95
3506656--3506708	26	2.0	26	92	0	88	28	20	22	28	1.99
3507010--3507062	26	2.0	26	92	0	88	26	18	28	26	1.98
3508950--3509002	26	2.0	26	96	0	97	26	18	26	28	1.98
3509536--3509569	16	2.2	15	89	5	50	20	47	20	11	1.81
3509697--3509721	13	1.9	13	100	0	50	24	16	36	24	1.94
3509763--3509913	45	3.4	44	73	10	126	19	30	29	20	1.97
3510559--3510611	26	2.0	26	88	0	79	26	18	26	28	1.98
3510404--3510767	196	1.9	196	82	5	459	23	30	26	20	1.98
3511555--3511639	44	1.9	44	87	0	125	17	31	34	16	1.93
3511514--3511713	45	4.5	45	74	2	143	18	31	30	20	1.96
3511984--3512036	26	2.0	26	96	0	97	26	15	26	32	1.95
3512830--3512882	26	2.0	26	92	0	88	26	16	26	30	1.97
3513747--3513771	13	1.9	13	100	0	50	24	16	36	24	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3514369--3514441	26	2.8	26	87	4	103	28	17	24	28	1.98
3514562--3514993	170	2.5	170	81	3	474	24	29	27	19	1.98
3515661--3515906	45	5.5	45	76	1	172	18	30	29	20	1.97
3515701--3515906	90	2.3	90	77	1	216	18	30	30	20	1.97
3516345--3516397	26	2.0	26	92	0	88	30	20	22	26	1.98
3517667--3517905	45	5.3	45	75	3	212	17	31	30	20	1.96
3517701--3517905	90	2.3	90	80	5	234	17	30	31	20	1.95
3518546--3518598	26	2.0	26	85	0	70	28	18	22	30	1.98
3520485--3520509	13	1.9	13	100	0	50	24	16	36	24	1.94
3520559--3520716	45	3.5	45	84	0	217	17	30	34	17	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120