genome.fa.s146.2.7.7.80.10.50.1000.50.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  50  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5759587--5759639	26	2.0	26	88	0	79	32	16	26	24	1.97
5760736--5761709	489	2.0	488	88	2	1438	28	18	21	32	1.96
5762768--5762820	26	2.0	26	100	0	106	26	20	26	26	1.99
5763669--5763718	26	1.9	26	95	0	91	28	14	30	28	1.95
5763900--5763933	4	8.5	4	86	0	50	2	26	67	2	1.19
5765493--5765543	26	2.0	26	96	0	93	25	19	25	29	1.99
5761220--5766895	899	6.3	903	86	3	7373	24	23	25	26	2.00
5766393--5766445	26	2.0	26	92	0	88	26	20	26	26	1.99
5766812--5766988	90	2.0	90	96	0	327	21	15	16	46	1.83
5767544--5767595	26	2.0	26	84	0	68	32	15	25	26	1.95
5768441--5768491	26	2.0	26	92	7	86	25	19	27	27	1.99
5769346--5769400	26	2.1	26	96	0	101	27	18	25	29	1.98
5767541--5773058	904	6.1	892	84	5	6775	25	24	24	25	2.00
5770240--5770310	26	2.7	26	97	0	133	30	15	23	29	1.95
5771169--5771247	26	3.0	26	96	0	140	27	18	25	27	1.98
5771938--5771962	8	3.1	8	100	0	50	16	72	12	0	1.13
5772982--5773034	26	2.0	26	96	0	97	24	20	28	26	1.99
5773713--5773764	26	2.0	26	96	0	95	26	17	26	28	1.97
5774605--5774683	26	3.0	26	90	0	122	29	20	22	27	1.98
5773008--5778314	903	5.9	899	82	7	6289	26	23	24	25	2.00
5776439--5776515	26	3.0	26	92	0	136	29	18	24	27	1.98
5777316--5777368	26	2.0	26	92	0	88	30	20	22	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5778457--5778509	26	2.0	26	96	0	97	28	20	26	24	1.99
5779359--5779411	26	2.0	26	81	0	61	26	20	26	26	1.99
5780252--5780304	26	2.0	26	88	0	79	26	18	24	30	1.98
5781157--5781210	26	2.1	26	96	0	99	27	24	24	24	2.00
5778339--5782665	903	4.8	903	86	3	5774	25	24	24	25	2.00
5782722--5782774	26	2.0	26	88	0	79	24	18	24	32	1.97
5783626--5783676	26	2.0	26	100	0	102	27	19	27	25	1.99
5785415--5785465	26	2.0	26	92	0	84	31	17	25	25	1.97
5782745--5789005	904	7.0	872	85	4	7336	25	24	24	25	2.00
5788087--5788139	26	2.0	26	96	0	97	28	20	26	24	1.99
5789303--5789355	26	2.0	26	96	0	97	26	22	24	26	2.00
5791065--5791117	26	2.0	26	89	7	81	24	16	30	28	1.97
5791947--5792332	158	2.4	158	83	4	449	23	28	27	20	1.99
5792977--5793029	26	2.0	26	92	0	88	26	16	26	30	1.97
5793879--5793930	26	2.0	26	100	0	104	26	19	26	26	1.99
5792579--5801143	901	9.6	886	83	6	10068	25	24	24	25	2.00
5795633--5795685	26	2.0	26	96	0	97	26	18	26	28	1.98
5796531--5796583	26	2.0	26	100	0	106	26	20	26	26	1.99
5794759--5801222	885	7.2	901	85	4	8325	25	24	24	25	2.00
5800078--5800130	26	2.0	26	96	0	97	26	20	24	28	1.99
5800987--5801039	26	2.0	26	92	0	88	28	18	24	28	1.98
5803421--5803473	26	2.0	26	96	0	97	26	22	26	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5804324--5804375	26	2.0	26	92	0	86	28	15	26	28	1.96
5801267--5806091	903	5.4	891	87	3	6273	25	23	25	25	2.00
5805208--5805260	26	2.0	26	92	0	88	28	13	26	32	1.93
5806486--5806537	26	2.0	26	81	7	61	30	15	25	28	1.96
5807387--5807437	26	2.0	26	96	0	93	29	21	21	27	1.99
5806103--5810932	902	5.4	900	86	2	6347	26	23	24	25	2.00
5808291--5808343	26	2.0	26	100	0	106	26	20	26	26	1.99
5809185--5809234	26	1.9	26	95	0	91	30	20	26	24	1.98
5811695--5811747	26	2.0	26	96	0	97	26	18	26	28	1.98
5813273--5813324	26	2.0	26	88	0	77	26	23	23	26	2.00
5814178--5814230	26	2.0	26	85	0	70	26	16	24	32	1.97
5812402--5814385	905	2.2	896	85	2	2735	24	24	25	25	2.00
5814158--5814685	185	2.9	183	83	1	617	22	28	28	20	1.99
5814548--5814600	26	2.0	26	92	0	88	24	20	24	30	1.99
5814176--5814752	185	3.1	183	79	4	595	23	28	27	21	1.99
5815440--5815492	26	2.0	26	85	0	70	30	16	24	28	1.97
5814518--5816369	903	2.1	892	87	2	2647	25	23	24	26	2.00
5817071--5817126	26	2.2	26	86	0	76	30	16	21	32	1.95
5817934--5817986	26	2.0	26	92	0	88	30	16	22	30	1.96
5820635--5820687	26	2.0	26	88	0	79	26	15	26	32	1.95
5817507--5824235	899	7.6	901	84	5	8265	25	24	25	25	2.00
5822410--5822462	26	2.0	26	92	0	88	26	22	24	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5823260--5823312	26	2.0	26	92	0	88	28	22	26	22	1.99
5824152--5824202	26	2.0	26	96	0	93	29	19	25	25	1.99
5825763--5825818	26	2.2	26	100	0	112	26	19	25	28	1.99
5824178--5827606	877	3.9	895	83	7	4106	25	24	24	25	2.00
5826619--5826671	26	2.0	26	88	0	79	28	16	26	28	1.97
5827522--5827574	26	2.0	26	96	0	97	28	20	26	24	1.99
5826804--5828345	740	2.1	748	87	4	2252	26	23	24	25	2.00
5828262--5828314	26	2.0	26	82	7	63	30	18	20	30	1.97
5829369--5829398	4	7.5	4	92	0	51	3	26	70	0	1.03
5827548--5830815	884	3.7	884	90	3	4823	25	24	24	25	2.00
5830253--5830282	4	7.5	4	92	0	51	3	26	70	0	1.03
5830951--5831071	21	5.8	21	68	28	71	29	2	3	64	1.22
5831017--5831072	17	3.1	18	80	17	55	32	1	1	64	1.14
5831675--5831719	20	2.2	20	92	0	72	44	33	11	11	1.75
5832107--5832146	17	2.4	16	84	8	53	22	5	0	72	1.04
5832133--5832180	17	2.8	17	78	9	53	12	6	2	79	1.01
5832133--5832190	14	4.2	14	76	8	57	13	6	1	77	1.05
5832156--5832195	14	2.5	17	73	23	50	15	10	0	75	1.05
5832201--5832433	118	2.0	119	90	4	373	44	8	13	33	1.74
5832198--5832433	58	4.0	58	85	7	316	44	8	13	33	1.74
5836305--5836396	23	3.7	27	71	22	85	73	0	20	5	1.02
5836309--5836391	22	3.7	22	76	10	71	73	0	20	6	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5836333--5836392	8	8.0	7	74	18	50	78	0	18	3	0.89
5836337--5836398	17	3.7	17	80	6	65	77	0	19	3	0.90
5837641--5837896	41	6.1	42	89	4	376	24	16	23	35	1.94
5837641--5837896	83	3.1	83	93	1	424	24	16	23	35	1.94
5837641--5837896	124	2.0	126	88	4	385	24	16	23	35	1.94
5837903--5837974	1	72.0	1	74	0	54	86	12	0	1	0.65
5837909--5837967	13	4.6	12	81	12	64	86	13	0	0	0.57
5837909--5837974	21	3.3	19	86	14	89	86	12	0	1	0.64
5837912--5837965	7	7.9	7	87	4	83	85	14	0	0	0.61
5838191--5838323	21	6.0	21	70	23	85	30	2	2	65	1.17
5838191--5838328	4	34.5	4	67	20	51	29	2	2	65	1.16
5838256--5838336	13	5.1	16	74	24	57	32	1	1	65	1.08
5839011--5839056	21	2.2	21	84	7	58	67	0	32	0	0.91
5839209--5839242	5	6.8	5	86	0	50	23	35	38	2	1.70
5839336--5839374	16	2.4	16	86	0	60	15	0	7	76	0.99
5839383--5839422	17	2.4	16	84	8	53	22	5	0	72	1.04
5839409--5839456	17	2.8	17	78	9	53	12	6	2	79	1.01
5839409--5839466	14	4.2	14	76	8	57	13	6	1	77	1.05
5839432--5839471	14	2.5	17	73	23	50	15	10	0	75	1.05
5839474--5839767	58	5.0	57	87	5	417	44	7	12	34	1.72
5839474--5839767	118	2.5	117	88	3	439	44	7	12	34	1.72
5839558--5839649	28	3.1	28	62	27	64	40	6	16	36	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5840361--5840413	26	2.0	26	92	0	88	26	16	26	30	1.97
5841269--5841321	26	2.0	26	96	0	97	26	18	26	28	1.98
5842712--5847869	878	5.9	866	85	5	6282	25	24	24	25	2.00
5845380--5847869	913	2.8	881	85	6	3144	26	24	23	25	2.00
5847060--5847112	26	2.0	26	96	0	97	26	22	18	32	1.97
5848692--5848744	26	2.0	26	88	0	79	30	28	16	24	1.97
5849643--5849695	26	2.0	26	96	0	97	28	26	18	26	1.98
5850536--5850588	26	2.0	26	88	0	79	30	28	16	24	1.97
5851487--5851539	26	2.0	26	96	0	97	28	26	18	26	1.98
5853067--5853118	26	2.0	26	92	0	86	28	25	17	28	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120