genome.fa.s146.2.7.7.80.10.50.1000.69.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  69  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8181327--8181368	22	1.9	23	85	9	61	35	2	2	59	1.23
8181832--8181863	15	2.1	15	94	0	55	56	0	6	37	1.25
8181824--8182104	144	1.9	145	92	2	467	46	4	10	38	1.59
8182174--8182203	2	15.0	2	100	0	60	50	0	0	50	1.00
8185941--8185965	7	3.6	7	100	0	50	28	0	0	72	0.86
8187048--8187125	21	3.7	20	74	22	63	58	11	5	24	1.52
8187129--8187203	24	3.1	25	78	12	70	56	13	4	26	1.55
8187132--8187194	27	2.3	28	76	13	69	55	14	1	28	1.48
8187279--8187361	12	6.9	12	73	20	59	79	3	4	12	1.01
8187310--8187361	27	1.9	28	85	14	74	80	1	5	11	0.96
8197381--8197709	159	2.0	156	93	3	516	23	13	22	39	1.90
8198285--8198463	72	2.5	70	82	9	182	35	8	9	46	1.68
8202208--8202583	185	2.0	185	94	3	657	25	10	25	38	1.87
8203031--8203079	25	2.0	25	95	0	89	26	24	12	36	1.91
8211769--8211823	17	3.7	17	67	32	54	38	14	14	32	1.87
8211768--8211830	27	2.3	27	100	0	126	34	14	15	34	1.88
8211931--8211964	18	1.9	18	88	5	52	26	0	0	73	0.83
8216696--8216724	7	4.1	7	100	0	58	27	13	31	27	1.94
8217573--8217601	6	4.8	6	100	0	58	48	51	0	0	1.00
8219280--8219308	3	9.7	3	100	0	58	34	0	0	65	0.93
8221206--8221337	68	1.9	73	84	10	186	35	6	0	57	1.29
8222835--8223035	18	11.6	17	73	19	118	52	1	1	43	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8222846--8222935	28	3.3	27	77	17	73	50	2	2	45	1.26
8222874--8223177	41	7.0	41	75	15	242	54	2	0	42	1.19
8222911--8223179	28	9.7	28	67	17	107	54	2	1	42	1.20
8222928--8223192	10	27.4	10	64	24	70	55	2	1	40	1.19
8222835--8223049	69	3.0	71	78	14	203	53	1	1	43	1.20
8222848--8223173	13	23.9	13	67	20	118	53	2	1	42	1.22
8222869--8223003	38	3.4	38	73	13	121	52	2	0	43	1.21
8222817--8223178	44	8.3	43	71	21	197	53	2	1	42	1.21
8222876--8223125	18	13.7	18	70	20	107	54	2	1	42	1.21
8223134--8223192	23	2.5	23	83	8	57	61	0	1	37	1.07
8223213--8223289	16	4.9	16	70	20	56	48	0	2	49	1.15
8223265--8223326	24	2.5	24	84	10	81	45	3	0	51	1.17
8223621--8223681	23	2.7	23	87	5	88	57	0	1	40	1.08
8223889--8223929	15	3.0	13	83	13	55	14	14	4	65	1.42
8223895--8223923	15	1.9	15	100	0	58	13	17	6	62	1.52
8225647--8225721	30	2.5	30	81	10	84	48	8	13	30	1.71
8225647--8225733	29	3.0	28	72	11	68	52	6	12	27	1.64
8227212--8227263	23	2.3	23	86	0	77	26	28	5	38	1.79
8228987--8229016	12	2.5	12	88	0	51	50	6	16	26	1.70
8229982--8230043	32	1.9	32	93	0	106	32	14	6	46	1.70
8230428--8230453	11	2.4	11	100	0	52	0	7	0	92	0.39
8234595--8234674	23	3.4	23	74	8	72	47	2	10	40	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8236283--8236462	64	2.8	63	77	8	193	34	9	11	45	1.72
8237326--8237368	22	2.0	22	90	0	68	46	9	6	37	1.63
8238429--8238538	54	2.0	54	87	0	157	57	2	9	30	1.44
8239702--8239746	11	4.0	11	82	2	54	51	4	2	42	1.34
8241599--8241624	12	2.2	12	100	0	52	42	7	19	30	1.79
8241626--8241670	24	1.9	23	86	4	63	62	0	8	28	1.25
8245879--8245927	21	2.2	23	89	7	75	53	2	4	40	1.32
8245933--8245964	16	1.9	17	93	6	57	37	3	3	56	1.31
8246065--8246104	9	4.4	9	87	0	53	67	0	22	10	1.20
8246692--8246757	19	3.3	19	68	12	51	28	0	4	66	1.11
8253800--8253898	25	4.1	23	74	10	99	45	4	3	47	1.37
8256515--8256584	32	2.2	32	79	2	88	57	4	1	37	1.27
8259137--8259196	32	1.9	31	86	10	86	63	1	1	33	1.14
8259789--8259853	30	2.2	30	75	8	71	70	9	3	16	1.26
8260634--8260712	24	3.1	24	71	16	61	41	0	3	54	1.18
8260780--8260878	48	2.0	50	84	3	130	21	2	19	57	1.50
8262873--8262906	13	2.6	13	90	0	50	29	26	8	35	1.87
8262936--8263603	236	2.8	235	82	4	789	30	9	13	46	1.74
8265953--8265986	11	3.1	11	86	0	50	32	14	14	38	1.87
8269484--8269508	10	2.5	10	100	0	50	44	16	0	40	1.47
8270283--8271056	201	3.9	201	81	5	816	35	12	10	42	1.76
8272152--8272248	49	2.0	49	85	0	131	34	7	8	50	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8279022--8279200	71	2.5	71	79	6	184	40	8	7	43	1.62
8279368--8279598	71	3.2	71	75	12	204	38	9	5	45	1.61
8279667--8279848	74	2.5	73	81	4	215	35	12	7	45	1.69
8279410--8279891	250	1.9	247	83	7	627	36	11	5	46	1.63
8279786--8279917	63	2.0	65	83	9	164	37	12	6	43	1.67
8279847--8280066	70	3.1	71	79	5	214	41	8	5	45	1.57
8296949--8297023	3	25.0	3	78	10	64	36	4	30	29	1.76
8299502--8299530	15	1.9	15	100	0	58	27	0	24	48	1.51
8299517--8299569	11	4.8	11	82	15	65	22	0	24	52	1.47
8299516--8299566	21	2.3	23	86	10	79	23	0	25	50	1.49
8303733--8303765	6	5.5	6	100	0	66	0	84	0	15	0.61
8305141--8305170	1	30.0	1	100	0	60	100	0	0	0	0.00
8305768--8305823	25	2.2	24	87	6	76	46	0	12	41	1.42
8305840--8305864	13	1.9	13	100	0	50	68	0	0	32	0.90
8306719--8306779	26	2.3	27	80	5	70	32	4	1	60	1.28
8308353--8308392	21	2.0	20	90	9	64	30	0	0	70	0.88
8308514--8308538	2	12.5	2	100	0	50	0	52	0	48	1.00
8311911--8311938	2	14.0	2	100	0	56	0	50	0	50	1.00
8313161--8313217	30	1.9	30	85	7	80	7	17	0	75	1.02
8313634--8313673	21	1.9	21	90	10	64	80	0	17	2	0.83
8314893--8314923	10	3.0	10	95	4	53	61	0	0	38	0.96
8315322--8315561	128	1.9	127	88	2	365	47	3	6	42	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8316429--8316490	22	2.8	22	70	18	56	56	3	6	33	1.41
8316478--8316509	15	2.1	15	94	0	55	46	3	0	50	1.17
8316705--8316804	50	2.0	52	90	4	159	54	4	5	37	1.41
8316762--8316793	15	2.1	15	94	0	55	46	0	3	50	1.17
8316604--8316906	158	1.9	155	85	8	411	47	2	5	43	1.42
8317545--8317606	29	2.1	30	93	3	108	48	6	20	24	1.73
8320700--8320746	19	2.4	19	79	10	51	57	2	0	40	1.11
8325326--8325364	2	19.5	2	100	0	78	51	0	48	0	1.00
8325508--8325538	5	6.2	5	96	0	53	77	0	19	3	0.90
8332175--8332400	106	2.1	107	93	2	395	33	15	11	38	1.85
8333875--8334077	107	1.9	110	87	5	306	38	6	9	45	1.62
8334504--8334549	20	2.1	22	84	11	60	8	30	0	60	1.26
8335553--8335618	33	2.0	33	85	11	91	46	13	15	24	1.81
8335717--8335784	33	2.1	33	83	10	86	47	13	13	26	1.79
8335738--8335800	33	1.9	33	83	6	83	42	7	19	30	1.79
8335459--8335878	164	2.6	162	79	6	452	44	11	16	27	1.83
8336816--8336849	11	3.0	11	91	4	50	0	11	2	85	0.71
8343139--8343275	67	2.0	67	85	2	186	35	18	12	32	1.89
8353311--8353355	21	2.1	21	84	8	56	17	4	13	64	1.44
8357648--8357728	30	2.7	29	78	3	90	53	1	1	44	1.16
8357709--8357743	7	4.9	7	86	6	52	65	0	0	34	0.93
8357749--8357806	20	3.1	18	76	11	53	46	3	3	46	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8357848--8357889	21	2.0	20	86	13	59	45	0	0	54	0.99
8360110--8360200	41	2.4	36	78	16	103	49	9	1	39	1.43
8360126--8360207	41	2.0	41	95	0	146	43	12	1	42	1.49
8360290--8360345	24	2.3	25	75	6	62	50	1	1	46	1.22
8360485--8360539	7	7.6	7	74	22	51	60	0	0	40	0.97
8360464--8360507	19	2.3	19	84	7	54	50	0	0	50	1.00
8360464--8360541	31	2.5	32	80	17	94	55	0	0	44	0.99
8360756--8360921	82	2.0	82	100	0	332	25	33	14	26	1.94
8364464--8364488	12	2.1	12	100	0	50	16	16	8	60	1.58
8364535--8364561	2	13.5	2	100	0	54	0	51	0	48	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120