genome.fa.s146.2.7.7.80.10.50.1000.47.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  47  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5380361--5381792	713	2.0	708	89	2	2181	26	24	22	26	2.00
5382840--5382898	26	2.3	26	91	5	95	27	28	20	23	1.99
5381062--5383849	896	3.1	893	86	4	3751	26	24	23	25	2.00
5383739--5383791	26	2.0	26	92	0	88	28	22	20	28	1.99
5384585--5384637	26	2.0	26	88	0	79	24	26	18	30	1.98
5385489--5385541	26	2.0	26	92	0	88	26	28	18	26	1.98
5383878--5391826	904	8.7	902	76	10	6821	25	24	24	25	2.00
5386390--5386445	26	2.2	26	93	0	94	30	26	17	25	1.97
5387289--5387341	26	2.0	26	88	0	79	28	20	20	30	1.98
5387130--5387500	185	2.0	185	86	1	519	21	27	28	23	1.99
5389257--5389309	26	2.0	26	96	0	97	28	26	18	26	1.98
5387474--5391822	911	4.8	896	85	4	5729	25	24	24	25	2.00
5390130--5390181	26	2.0	26	96	0	95	26	25	19	28	1.98
5391035--5391085	26	2.0	26	84	0	66	23	25	19	31	1.98
5391061--5392554	719	2.1	716	91	1	2409	25	24	23	25	2.00
5391745--5399735	877	9.1	877	82	6	8916	25	24	24	25	2.00
5394395--5394473	26	3.0	26	86	0	113	29	21	20	29	1.98
5397039--5397091	26	2.0	26	96	0	97	26	24	20	28	1.99
5397068--5399735	880	3.0	870	86	4	3380	25	24	24	25	2.00
5399709--5399761	26	2.0	26	100	0	106	26	26	20	26	1.99
5400875--5400927	26	2.0	26	85	0	70	24	22	20	32	1.98
5402012--5402061	27	1.9	25	92	8	82	26	26	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5403759--5403811	26	2.0	26	88	0	79	24	22	22	30	1.99
5404655--5404707	26	2.0	26	96	0	97	26	24	20	28	1.99
5405714--5405764	26	2.0	26	96	0	93	25	29	15	29	1.96
5406621--5406673	26	2.0	26	88	0	79	26	24	18	30	1.98
5406950--5407562	316	1.9	322	92	4	1028	33	24	19	23	1.97
5409467--5409519	26	2.0	26	85	0	70	30	22	20	26	1.98
5410315--5410367	26	2.0	26	92	0	88	28	24	18	28	1.98
5408995--5410608	848	1.9	846	85	3	2253	25	25	24	24	2.00
5411394--5411446	26	2.0	26	88	0	79	30	28	18	22	1.98
5413195--5413247	26	2.0	26	85	0	70	26	20	18	33	1.96
5411205--5415651	901	5.0	892	85	5	5655	25	25	23	25	2.00
5414091--5414143	26	2.0	26	92	0	88	24	24	22	28	2.00
5414963--5415023	26	2.3	26	100	0	122	27	26	21	24	1.99
5415157--5416134	492	2.0	492	92	0	1625	31	22	19	27	1.98
5417244--5417295	25	2.0	26	96	3	97	26	25	21	26	1.99
5415648--5422403	903	7.7	844	81	9	6818	26	24	23	25	2.00
5421627--5421682	26	2.2	26	96	0	103	26	25	21	26	1.99
5422703--5422765	31	2.0	32	96	3	119	33	22	9	34	1.86
5423272--5423327	26	2.2	26	100	0	112	28	25	19	26	1.99
5425079--5425129	26	2.0	26	96	0	93	25	25	19	29	1.99
5422728--5428756	899	6.7	898	85	4	7711	26	24	23	25	2.00
5425977--5426029	26	2.0	26	88	0	79	28	24	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5426872--5426953	26	3.2	26	100	0	164	31	18	19	30	1.96
5425079--5427825	923	3.0	925	85	3	3178	25	24	24	25	2.00
5428671--5428723	26	2.0	26	96	0	97	28	20	20	30	1.98
5431253--5431304	26	2.0	26	88	0	77	26	23	19	30	1.98
5432095--5432152	26	2.2	26	87	3	80	29	22	18	29	1.98
5430884--5432567	836	2.0	834	85	3	2254	24	25	24	26	2.00
5432233--5433570	710	1.9	712	90	1	2126	27	23	22	26	2.00
5434536--5434591	26	2.2	26	86	0	76	32	21	19	26	1.97
5434565--5436048	716	2.1	716	88	2	2208	27	24	23	25	2.00
5437038--5437087	26	1.9	26	88	8	75	26	28	16	30	1.96
5438812--5438862	26	2.0	26	88	0	75	29	19	19	31	1.97
5437994--5441386	897	3.8	895	87	3	4579	25	24	24	26	2.00
5440614--5440666	26	2.0	26	88	0	79	24	22	22	30	1.99
5444828--5444877	26	1.9	26	91	0	82	26	24	20	30	1.98
5445709--5445758	26	1.9	26	91	0	82	26	22	22	30	1.99
5448338--5448390	26	2.0	26	88	0	79	30	22	15	32	1.94
5449233--5449285	26	2.0	26	96	0	97	28	26	18	26	1.98
5447620--5450589	878	3.4	877	85	4	3851	25	24	23	25	2.00
5450108--5450161	26	2.1	26	89	6	83	29	22	20	27	1.98
5450942--5450991	26	1.9	26	91	0	82	28	24	16	32	1.96
5451787--5451839	26	2.0	26	88	0	79	32	22	18	26	1.97
5454629--5454681	26	2.0	26	89	7	81	24	22	24	28	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5452853--5463372	902	11.8	899	85	4	12942	25	24	23	25	2.00
5458179--5458231	26	2.0	26	100	0	106	26	26	20	26	1.99
5459069--5459120	26	2.0	26	96	0	95	26	25	19	28	1.98
5457763--5463372	903	6.3	899	85	4	7018	26	25	23	25	2.00
5459972--5460024	26	2.0	26	100	0	106	26	26	20	26	1.99
5460874--5460926	26	2.0	26	96	0	97	28	26	18	26	1.98
5461773--5461824	25	2.0	26	92	3	88	25	25	23	26	2.00
5464186--5464238	26	2.0	26	92	0	88	28	24	18	28	1.98
5465067--5465118	25	2.0	26	96	3	97	26	23	21	28	1.99
5465418--5465461	22	2.0	22	95	0	79	43	13	11	31	1.80
5468898--5468932	18	1.9	18	88	0	52	37	25	14	22	1.92
5469107--5469165	25	2.4	25	88	5	86	38	18	28	13	1.89
5469320--5469363	22	2.0	22	95	0	79	43	13	11	31	1.80
5470987--5471038	26	2.0	26	92	0	86	28	28	17	25	1.97
5469422--5472907	903	3.9	899	84	5	4475	26	25	22	24	2.00
5471850--5471902	26	2.0	26	96	0	97	26	24	20	28	1.99
5472743--5472795	26	2.0	26	92	7	90	30	26	16	26	1.97
5473390--5473596	57	3.6	57	90	3	335	37	13	6	43	1.69
5473391--5473619	115	2.0	120	92	4	387	36	12	6	45	1.67
5476548--5476600	26	2.0	26	92	0	88	28	24	18	28	1.98
5477419--5477469	25	2.0	25	96	0	93	27	21	21	29	1.99
5475801--5477649	871	2.1	882	83	7	2315	24	24	25	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5477770--5477813	22	2.0	22	95	0	79	43	13	11	31	1.80
5481259--5481293	18	1.9	18	88	0	52	37	25	14	22	1.92
5481468--5481526	25	2.4	25	88	5	86	38	18	28	13	1.89
5481680--5481723	22	2.0	22	95	0	79	43	13	11	31	1.80
5483320--5483371	26	2.0	25	92	3	86	26	28	19	25	1.98
5481776--5485165	888	3.9	887	84	8	4466	26	25	23	25	2.00
5485033--5485085	26	2.0	26	100	0	106	26	26	20	26	1.99
5485674--5485908	58	4.0	60	84	4	300	34	13	8	44	1.73
5485674--5485905	118	2.0	118	88	5	353	34	13	8	44	1.73
5485916--5485973	14	4.2	14	76	8	57	77	1	6	13	1.05
5485923--5485973	17	2.9	17	76	21	52	78	1	5	13	1.02
5485960--5486000	17	2.5	16	88	7	64	73	0	2	24	0.96
5487047--5487098	10	5.2	10	75	9	52	75	0	0	25	0.81
5487049--5487197	4	36.8	4	68	22	64	69	3	0	26	1.09
5487073--5487192	61	1.9	65	80	14	144	66	4	0	28	1.15
5487113--5487209	27	3.7	27	72	18	87	69	4	1	25	1.13
5487035--5487206	92	1.9	92	83	11	228	68	4	1	26	1.17
5487407--5487470	7	8.9	7	81	13	76	0	3	12	84	0.74
5487409--5487462	18	2.8	19	83	8	74	0	3	12	83	0.78
5487482--5487898	41	10.0	41	90	2	609	36	22	16	24	1.94
5487482--5487898	83	5.0	82	90	2	611	36	22	16	24	1.94
5489152--5489194	17	2.5	17	84	0	50	4	16	0	79	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5489146--5489233	22	4.0	21	75	13	70	6	18	0	75	1.02
5489169--5489206	14	2.8	13	88	11	58	0	13	0	86	0.56
5489165--5489198	17	2.0	17	100	0	68	0	11	0	88	0.52
5489149--5489207	8	8.0	7	77	19	50	3	16	0	79	0.86
5489143--5489219	24	3.4	22	77	15	68	6	18	0	75	1.01
5493104--5493398	58	5.0	58	87	5	423	34	12	7	45	1.71
5493106--5493395	118	2.5	117	90	4	440	34	12	7	45	1.70
5493406--5493463	14	4.2	14	76	8	57	77	1	6	13	1.05
5493413--5493463	17	2.9	17	76	21	52	78	1	5	13	1.02
5493450--5493489	17	2.4	16	84	8	53	72	0	5	22	1.04

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120