genome.fa.s146.2.7.7.80.10.50.1000.95.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  95  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12791326--12791363	12	3.2	12	85	7	51	71	2	0	26	1.00
12791376--12791417	19	2.2	19	83	8	59	54	9	0	35	1.33
12791399--12791466	29	2.4	28	75	18	70	55	7	1	35	1.37
12791532--12791572	10	4.1	10	83	0	55	51	2	2	43	1.28
12791654--12791700	7	5.6	9	90	10	57	27	0	2	70	0.99
12791677--12791720	21	2.2	20	83	4	52	25	2	6	65	1.28
12791669--12791728	30	2.0	29	87	3	84	28	1	6	63	1.29
12791985--12792071	37	2.4	37	84	11	108	32	0	2	65	1.05
12792354--12792397	22	2.0	22	86	8	63	47	0	18	34	1.49
12792668--12792717	21	2.5	20	81	15	59	70	10	0	20	1.16
12792687--12792735	20	2.5	19	77	9	53	67	10	0	22	1.20
12793338--12793372	18	2.1	18	89	10	56	40	2	11	45	1.55
12796055--12796091	16	2.4	16	86	8	51	40	8	0	51	1.32
12798097--12798608	36	14.3	35	70	16	167	25	15	9	49	1.75
12798788--12798910	50	2.4	50	83	5	138	25	17	4	52	1.64
12800847--12800889	3	14.3	3	100	0	86	67	0	0	32	0.91
12802214--12802266	27	2.0	27	84	0	70	37	7	0	54	1.29
12802465--12802515	12	4.2	12	83	16	61	43	1	0	54	1.11
12802463--12802526	12	5.2	12	76	16	51	45	1	0	53	1.10
12802463--12802519	24	2.3	24	80	14	71	43	1	0	54	1.10
12803293--12803345	25	2.1	25	96	0	97	33	7	24	33	1.84
12809798--12809840	22	2.0	22	85	0	59	53	2	2	41	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12812700--12812744	22	2.1	21	87	4	63	73	15	2	8	1.18
12812943--12813064	65	1.9	65	84	3	165	39	15	24	20	1.91
12816386--12816424	15	2.6	15	91	0	60	20	25	2	51	1.60
12825783--12825807	13	1.9	13	100	0	50	52	0	0	48	1.00
12828561--12828585	2	12.5	2	100	0	50	48	0	0	52	1.00
12830230--12830499	74	3.8	70	81	9	278	44	7	9	38	1.64
12830618--12830684	31	2.2	31	94	0	116	41	4	8	44	1.56
12830704--12830856	73	2.1	71	83	5	184	42	6	11	39	1.66
12831800--12831843	21	2.1	21	86	0	61	15	6	0	77	0.97
12832584--12832660	37	2.1	37	92	0	127	49	5	0	45	1.24
12834282--12834328	21	2.2	22	77	11	53	53	4	0	42	1.20
12835906--12835937	11	2.9	11	95	0	55	34	15	18	31	1.93
12838950--12839029	42	1.9	42	94	0	142	32	10	10	47	1.70
12839493--12839571	31	2.5	31	73	18	83	62	2	22	12	1.43
12854931--12854956	13	2.0	13	100	0	52	61	0	7	30	1.24
12855236--12855298	31	2.0	31	100	0	126	49	9	19	22	1.76
12859395--12859593	102	2.0	101	92	3	337	51	14	11	23	1.73
12861696--12861776	39	2.2	38	82	8	96	50	1	4	43	1.31
12862162--12862220	27	2.1	28	84	9	77	32	0	3	64	1.10
12862174--12862229	3	18.7	3	78	14	62	33	0	1	64	1.04
12862584--12862635	25	2.1	24	82	3	59	46	3	0	50	1.20
12862680--12862716	19	2.1	17	90	10	56	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12863076--12863120	17	2.8	16	90	9	74	53	0	2	44	1.13
12863226--12863272	18	2.5	18	89	6	67	44	2	0	53	1.12
12863239--12863308	17	4.2	16	75	18	56	47	1	1	50	1.19
12864943--12865006	2	32.0	2	100	0	128	50	0	50	0	1.00
12865727--12865764	17	2.2	17	90	0	58	76	0	7	15	1.01
12865846--12865884	20	2.0	20	85	5	53	20	5	0	74	1.01
12866225--12866265	22	1.9	22	85	5	57	65	0	4	29	1.13
12866245--12866304	22	2.6	23	74	15	61	73	0	10	16	1.09
12867223--12867294	7	9.7	7	76	15	56	76	0	11	12	1.02
12867224--12867278	15	3.7	15	82	4	67	76	0	12	10	1.02
12867223--12867289	23	2.9	23	80	12	66	74	0	11	13	1.07
12867224--12867294	30	2.4	30	84	13	85	77	0	11	11	1.00
12868255--12868279	10	2.5	10	100	0	50	76	0	0	24	0.80
12868423--12868470	23	2.1	23	88	3	71	75	2	18	4	1.07
12869266--12869301	2	18.0	2	88	0	54	50	0	2	47	1.15
12879343--12879441	49	2.0	49	84	0	126	18	22	11	48	1.79
12882666--12882723	27	2.1	30	84	12	79	48	0	3	48	1.18
12882761--12882813	14	3.5	17	71	28	64	41	5	5	47	1.51
12882761--12882821	28	2.2	28	91	2	97	44	6	4	44	1.51
12885756--12885805	23	2.2	22	85	3	64	56	2	0	42	1.11
12885890--12886132	124	2.0	124	99	0	477	36	13	23	26	1.92
12887284--12887645	179	2.0	180	93	0	618	33	6	11	48	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12891094--12891139	24	2.0	23	83	12	58	17	8	6	67	1.39
12891122--12891180	13	4.4	14	77	14	54	22	0	5	72	1.03
12894804--12894853	23	2.2	23	89	7	75	54	0	4	42	1.19
12894839--12894905	27	2.5	27	77	15	68	56	0	0	43	0.99
12894841--12894905	26	2.4	26	82	10	69	55	0	0	44	0.99
12899588--12899635	7	7.1	7	79	15	57	16	0	2	81	0.79
12899580--12899641	19	3.4	18	91	8	99	17	0	1	80	0.79
12899583--12899641	25	2.4	26	86	8	79	16	0	1	81	0.78
12899584--12899792	4	52.8	4	66	21	77	26	3	2	67	1.18
12899608--12899659	25	2.1	25	85	7	70	19	1	3	75	1.06
12899728--12899822	20	4.7	20	82	6	111	27	5	0	67	1.12
12899734--12899818	21	4.1	21	85	7	111	27	5	0	67	1.14
12899734--12899818	42	2.0	41	90	2	134	27	5	0	67	1.14
12900544--12900683	6	22.8	6	73	17	76	21	1	2	75	0.99
12900557--12900675	22	5.2	21	71	19	87	23	0	2	73	1.01
12900635--12900675	5	7.8	5	89	10	64	17	2	0	80	0.82
12900707--12900931	62	3.7	61	83	2	247	39	5	13	41	1.68
12902552--12902656	10	10.8	10	71	12	58	60	4	2	31	1.32
12902542--12902651	29	3.8	28	73	13	89	60	4	2	31	1.31
12902588--12902651	20	3.2	20	84	4	85	64	4	3	28	1.29
12902691--12902747	20	2.8	21	76	15	66	50	7	1	40	1.40
12902706--12902747	20	2.1	20	95	0	75	45	9	0	45	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12902712--12902758	20	2.3	20	89	7	69	53	10	0	36	1.36
12902808--12902859	18	2.8	19	79	2	61	53	5	1	38	1.36
12902788--12902859	19	3.9	18	75	10	56	56	4	1	37	1.27
12902832--12902882	21	2.6	19	80	14	59	41	5	3	49	1.45
12902849--12902966	58	2.0	58	84	9	152	38	1	5	53	1.35
12902808--12903015	10	21.0	9	73	14	92	40	3	5	50	1.43
12902813--12902975	19	8.3	19	73	11	82	40	3	4	51	1.39
12904075--12904116	11	3.7	11	81	15	50	76	0	2	21	0.90
12906660--12906721	31	2.0	30	84	9	81	48	3	8	40	1.49
12907359--12907420	2	31.5	2	90	3	90	48	4	0	46	1.23
12909598--12909640	13	3.2	13	83	3	50	37	11	6	44	1.68
12921626--12921679	20	2.5	22	73	8	58	55	0	0	44	0.99
12921956--12921988	12	2.9	12	86	13	52	60	0	0	39	0.97
12926775--12926878	39	2.7	39	92	0	163	22	30	15	31	1.95
12926775--12926897	39	3.2	39	83	2	158	23	30	13	32	1.93
12930407--12930452	18	2.7	17	80	9	58	45	4	6	43	1.49
12931337--12931366	15	2.1	14	93	6	51	90	0	0	10	0.47
12932542--12932583	18	2.4	18	80	4	50	73	2	2	21	1.06
12935623--12935654	2	16.0	2	100	0	64	50	0	0	50	1.00
12938041--12938465	119	3.6	117	81	4	404	43	13	21	21	1.86
12938869--12939005	69	2.0	69	84	2	177	41	14	18	25	1.88
12938985--12939026	21	2.0	21	100	0	84	47	9	19	23	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12938913--12939083	90	1.9	90	85	4	238	44	13	17	24	1.85
12940021--12940063	16	2.6	16	85	7	50	4	11	6	76	1.13
12940399--12940486	41	2.1	41	85	0	113	19	12	15	52	1.74
12943398--12943469	37	2.0	37	83	8	94	61	6	15	16	1.55
12944036--12944084	5	10.0	5	82	12	66	79	2	0	18	0.83
12944042--12944093	24	2.2	23	86	6	68	82	1	1	13	0.84
12944935--12944988	3	18.3	3	88	3	83	64	1	1	31	1.14
12945293--12945338	22	2.1	22	100	0	92	23	13	13	50	1.76
12968103--12968166	24	2.7	23	80	7	83	21	42	7	28	1.81
12968817--12968862	19	2.3	20	85	3	58	39	26	17	17	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120