genome.fa.s146.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  18  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1994935--1995088	45	3.4	44	74	6	130	19	28	31	20	1.97
2000008--2000060	26	2.0	26	86	13	74	28	28	16	26	1.97
2000488--2000648	45	3.6	44	77	5	144	21	29	31	18	1.97
2001747--2001799	26	2.0	26	92	0	88	26	26	20	26	1.99
2004263--2004315	26	2.0	26	96	0	97	26	24	20	28	1.99
2007444--2007606	45	3.7	44	81	4	168	18	30	33	17	1.94
2011209--2011405	45	4.4	45	76	1	180	19	29	32	18	1.95
2012261--2012311	26	2.0	26	88	0	75	23	27	21	27	1.99
2012616--2012667	26	2.0	26	92	3	88	28	25	19	26	1.98
2013117--2013249	45	3.0	45	76	7	119	18	31	29	20	1.96
2014205--2014257	26	2.0	26	82	7	63	28	22	18	30	1.98
2014750--2014802	26	2.0	26	96	0	97	26	24	20	28	1.99
2015238--2015429	90	2.1	91	80	5	212	21	26	31	20	1.98
2015607--2015646	16	2.5	16	91	0	62	12	12	45	30	1.79
2016709--2016761	26	2.0	26	88	0	79	28	26	18	26	1.98
2017060--2017117	26	2.2	26	93	3	98	31	25	18	24	1.98
2017683--2017735	26	2.0	26	92	0	88	26	24	18	30	1.98
2019673--2019725	26	2.0	26	88	0	79	28	22	16	32	1.96
2024166--2024218	26	2.0	26	96	0	97	26	28	20	24	1.99
2024518--2024570	26	2.0	26	96	0	97	26	24	20	28	1.99
2025067--2025166	45	2.2	45	80	3	112	20	26	36	18	1.95
2026948--2027151	45	4.5	45	75	2	185	22	30	29	17	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2026953--2027151	90	2.2	90	81	1	220	22	31	29	16	1.96
2028090--2028142	26	2.0	26	92	7	90	26	26	20	26	1.99
2030014--2030066	26	2.0	26	88	0	79	30	28	16	24	1.97
2030092--2030636	275	2.0	274	81	2	646	18	28	30	21	1.97
2033727--2033779	26	2.0	26	85	0	70	30	28	18	22	1.98
2034574--2034733	45	3.6	45	83	0	185	19	31	31	17	1.95
2036028--2036080	26	2.0	26	92	0	88	28	26	20	24	1.99
2037460--2037510	26	2.0	26	92	0	84	29	25	19	25	1.99
2038563--2038696	45	3.0	45	76	2	126	17	29	32	20	1.95
2039594--2039644	26	2.0	26	88	0	75	27	29	15	27	1.96
2038215--2039678	784	1.9	785	83	1	1941	20	27	29	22	1.98
2039937--2039989	26	2.0	26	88	0	79	30	20	16	32	1.95
2040430--2040588	45	3.5	45	79	0	183	18	30	32	19	1.96
2040632--2040656	13	1.9	13	100	0	50	24	36	16	24	1.94
2041887--2041937	26	2.0	26	88	0	75	31	29	11	27	1.92
2043598--2043728	45	2.9	43	76	9	113	19	35	29	14	1.92
2044571--2044621	26	2.0	26	92	0	84	27	29	17	25	1.98
2044929--2045064	45	3.0	45	77	3	132	20	31	28	19	1.97
2045287--2045339	26	2.0	26	92	0	88	24	28	20	26	1.99
2045520--2045681	45	3.6	44	79	2	162	20	31	32	16	1.94
2046609--2046660	26	2.0	25	92	3	86	26	19	21	32	1.97
2046978--2047137	45	3.6	45	75	1	124	19	28	31	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2047863--2047915	26	2.0	26	88	0	79	26	20	22	30	1.98
2050448--2050500	26	2.0	26	88	0	79	30	24	16	28	1.97
2050942--2051099	45	3.5	45	81	0	190	18	31	31	18	1.95
2053226--2053559	169	2.0	169	99	0	659	17	19	28	34	1.95
2058720--2058877	45	3.5	45	77	3	138	24	29	29	16	1.96
2066074--2066126	26	2.0	26	96	0	97	28	22	18	30	1.98
2066575--2066782	45	4.6	45	74	3	177	20	29	32	17	1.96
2066577--2066822	135	1.8	135	80	6	302	19	28	32	18	1.96
2069263--2069314	25	2.0	26	85	3	70	28	23	19	28	1.98
2069605--2069657	26	2.0	26	96	0	97	28	26	18	26	1.98
2077640--2077885	45	5.5	44	75	6	181	19	29	32	18	1.95
2077647--2077845	90	2.2	90	82	1	238	19	30	32	17	1.95
2077688--2077877	90	2.1	90	86	1	256	20	28	33	18	1.96
2077639--2077883	135	1.8	135	81	0	310	19	29	33	18	1.95
2078777--2078832	26	2.2	26	90	0	85	33	25	14	26	1.94
2078974--2079051	26	3.0	25	87	5	111	28	23	19	29	1.98
2079047--2079126	40	2.0	40	92	0	133	28	21	32	17	1.96
2079198--2079250	26	2.0	26	92	7	90	26	22	20	30	1.98
2079553--2079630	26	3.0	26	96	1	140	26	25	19	28	1.99
2079740--2079792	26	2.0	26	88	0	79	30	28	16	24	1.97
2079937--2080015	26	3.0	25	89	7	122	27	26	17	27	1.98
2080554--2080660	45	2.4	45	82	3	135	23	29	31	14	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2080497--2080660	90	1.8	90	80	5	197	21	30	29	18	1.97
2081600--2081652	26	2.0	26	85	7	72	30	26	16	26	1.97
2082355--2082407	26	2.0	26	88	0	79	28	26	18	26	1.98
2083200--2083315	45	2.6	45	82	5	146	18	29	31	19	1.96
2083200--2083356	45	3.5	44	78	10	135	19	28	32	19	1.97
2083431--2083483	26	2.0	26	92	0	88	26	26	20	26	1.99
2084247--2084444	45	4.4	44	76	8	166	21	30	31	16	1.95
2084285--2084476	90	2.1	90	78	11	198	21	30	31	16	1.95
2085385--2085437	26	2.0	26	89	7	81	28	26	18	26	1.98
2085555--2085764	45	4.7	45	73	2	161	20	30	31	16	1.95
2085565--2085762	90	2.2	90	80	3	211	20	31	30	17	1.95
2086975--2087136	45	3.6	44	78	3	162	20	30	31	17	1.96
2086977--2087192	90	2.4	90	81	1	227	22	29	30	17	1.97
2088122--2088174	26	2.0	26	88	0	79	28	26	18	26	1.98
2088938--2089095	45	3.5	44	77	5	120	17	29	32	20	1.95
2090858--2091015	45	3.5	45	76	0	145	19	29	32	18	1.96
2092592--2092644	26	2.0	26	92	0	88	37	30	7	24	1.83
2093084--2093240	45	3.5	44	80	5	163	18	29	32	19	1.95
2094102--2094154	26	2.0	26	92	0	88	28	28	20	22	1.99
2093948--2094312	196	1.9	196	82	4	468	20	27	29	22	1.98
2094457--2094509	26	2.0	26	88	0	79	32	24	16	26	1.97
2094968--2095064	45	2.2	45	81	3	106	20	30	31	16	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2103843--2103895	26	2.0	26	82	7	63	28	26	18	26	1.98
2104201--2104250	26	1.9	26	95	0	91	26	26	18	30	1.98
2105751--2105803	26	2.0	26	88	0	79	26	28	20	24	1.99
2107529--2107581	26	2.0	26	85	0	70	22	22	22	32	1.98
2107191--2107772	320	1.8	320	82	1	754	21	26	27	24	1.99
2107999--2108201	45	4.5	45	77	0	163	20	27	31	20	1.97
2108002--2108201	90	2.2	90	81	0	220	20	27	31	20	1.97
2108733--2108785	26	2.0	26	92	0	88	28	28	18	24	1.98
2109090--2109142	26	2.0	26	88	0	79	30	24	16	28	1.97
2109594--2109799	45	4.6	45	79	0	169	19	29	29	21	1.98
2110840--2111129	158	1.8	158	82	5	372	18	28	28	24	1.98
2111817--2111867	26	1.9	27	88	4	77	23	27	19	29	1.98
2112194--2112391	45	4.4	45	75	7	170	19	28	33	19	1.96
2112194--2112391	90	2.2	90	77	7	206	19	28	33	19	1.96
2113969--2114116	45	3.3	45	81	5	165	15	31	33	18	1.93
2113972--2114169	90	2.2	90	80	1	209	17	29	33	18	1.94
2114959--2115162	45	4.6	45	73	7	182	20	28	32	18	1.96
2116430--2116482	26	2.0	26	85	0	70	28	20	18	32	1.97
2123526--2123604	26	3.0	26	90	0	131	27	24	18	29	1.98
2124045--2124147	44	2.3	45	80	8	113	19	28	35	16	1.93
2125121--2125173	26	2.0	26	89	7	81	28	16	24	30	1.97
2126432--2126629	90	2.2	90	80	3	211	21	31	26	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2126467--2126679	45	4.7	45	78	1	185	20	31	28	19	1.97
2126460--2126679	90	2.4	90	79	3	210	20	30	29	20	1.97
2127268--2127320	26	2.0	26	92	0	88	24	18	28	28	1.98
2128077--2128279	45	4.5	45	74	6	151	18	29	30	21	1.97
2128107--2128280	45	3.9	45	75	4	154	17	29	31	21	1.97
2128722--2128774	26	2.0	26	88	0	79	28	20	24	26	1.99
2129718--2129742	13	1.9	13	100	0	50	24	36	16	24	1.94
2130973--2131025	26	2.0	26	92	7	90	30	26	16	26	1.97
2130960--2131481	162	3.3	158	69	14	395	21	27	25	25	1.99
2131295--2131345	26	2.0	26	96	0	93	25	25	19	29	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120