genome.fa.s146.2.7.7.80.10.50.1000.107.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  107  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15291035--15291070	19	1.9	19	88	5	56	52	0	0	47	1.00
15296781--15296930	76	2.0	76	90	2	239	34	20	16	30	1.94
15306858--15306913	21	2.7	20	78	10	60	32	1	0	66	1.03
15306819--15306912	20	4.9	20	72	19	67	32	5	0	61	1.18
15308127--15308161	19	1.9	19	88	11	56	54	0	0	45	0.99
15313876--15314023	76	1.9	76	90	2	235	34	19	15	30	1.93
15327258--15327297	20	2.0	21	90	5	64	52	0	0	47	1.00
15330077--15330431	177	2.0	178	97	0	676	23	4	27	43	1.73
15331153--15331200	2	24.0	2	100	0	96	50	0	0	50	1.00
15338595--15338621	2	13.5	2	100	0	54	0	48	0	51	1.00
15339234--15339276	21	2.0	22	86	8	63	69	20	9	0	1.15
15340340--15340390	21	2.4	21	73	0	57	15	19	1	62	1.41
15342186--15342383	98	2.0	98	98	0	378	21	10	21	46	1.81
15351740--15351846	32	3.3	32	70	14	103	40	16	9	33	1.81
15351742--15351869	64	2.0	64	93	0	220	39	14	10	35	1.79
15352599--15352642	2	22.0	2	100	0	88	0	50	0	50	1.00
15352642--15352677	2	18.0	2	100	0	72	50	50	0	0	1.00
15361976--15362025	24	2.1	24	81	7	57	58	26	2	14	1.47
15362695--15362750	22	2.5	22	79	2	58	53	0	1	44	1.11
15364235--15364304	35	2.0	35	91	0	113	54	1	8	35	1.40
15365562--15365612	12	4.4	12	76	16	54	35	0	0	64	0.94
15365569--15365612	16	2.6	17	89	10	72	36	0	0	63	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15371209--15371257	22	2.3	21	82	6	62	61	2	6	30	1.32
15371274--15371319	15	3.3	15	73	17	53	50	0	10	39	1.38
15371267--15371344	27	2.9	27	86	5	113	47	0	8	43	1.34
15371272--15371357	27	3.3	25	85	8	84	53	0	9	37	1.33
15371430--15371514	22	3.8	22	73	14	84	52	1	1	44	1.16
15371423--15371518	18	5.8	17	74	18	62	53	1	1	44	1.14
15371482--15371531	9	4.9	10	76	18	50	64	0	0	36	0.94
15371615--15371680	25	2.6	26	76	4	64	46	3	3	46	1.33
15371759--15371802	21	2.1	21	87	4	63	52	13	0	34	1.41
15382614--15382672	26	2.2	28	84	6	77	61	1	5	32	1.28
15385702--15385771	33	2.0	36	86	8	101	48	4	4	42	1.42
15390747--15390777	2	15.5	2	100	0	62	48	0	0	51	1.00
15391946--15391992	19	2.5	19	73	13	51	57	0	0	42	0.98
15397556--15397601	3	15.3	3	95	0	83	65	2	0	32	1.05
15401086--15401110	12	2.1	12	100	0	50	52	24	8	16	1.70
15404906--15404945	20	2.0	20	90	9	64	45	0	0	55	0.99
15407957--15407985	4	7.2	4	100	0	58	75	0	24	0	0.80
15410988--15411043	25	2.2	25	96	0	103	46	12	7	33	1.69
15415971--15416010	17	2.4	17	95	0	71	17	15	2	65	1.39
15420634--15420664	14	2.2	14	100	0	62	41	0	12	45	1.42
15424883--15424923	21	1.9	22	85	5	57	39	12	4	43	1.63
15428596--15428630	2	17.5	2	100	0	70	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15428779--15428805	2	13.5	2	100	0	54	48	0	0	51	1.00
15429712--15429765	26	2.1	26	96	0	99	22	14	12	50	1.77
15431558--15431603	22	2.0	24	87	8	69	54	6	10	28	1.60
15437992--15438068	29	2.6	30	83	6	86	37	3	0	58	1.17
15438576--15438611	2	18.0	2	100	0	72	50	0	0	50	1.00
15443605--15443653	22	2.1	24	88	7	75	55	0	0	44	0.99
15446004--15446033	13	2.3	13	94	0	51	56	10	3	30	1.48
15446884--15446936	23	2.3	23	80	0	61	43	1	0	54	1.11
15448584--15448718	71	1.9	71	85	0	189	40	6	4	48	1.49
15448816--15448935	61	1.9	64	86	8	176	59	10	10	20	1.59
15450094--15450126	17	1.9	17	93	0	57	27	3	6	63	1.32
15450949--15450988	20	2.0	21	90	5	64	60	0	2	37	1.11
15458293--15458411	61	2.0	61	89	0	184	47	1	6	43	1.39
15462045--15462078	2	17.0	2	100	0	68	50	0	0	50	1.00
15462838--15462881	20	2.2	20	84	8	54	18	2	2	77	0.98
15464290--15464320	3	10.3	3	100	0	62	32	0	0	67	0.91
15464751--15464783	17	1.9	17	88	11	50	51	0	9	39	1.34
15465156--15465205	13	3.7	14	78	10	59	62	0	0	38	0.96
15469236--15469271	18	2.0	19	89	10	58	66	0	5	27	1.13
15475639--15475663	12	2.1	12	100	0	50	32	20	24	24	1.98
15483871--15483979	55	2.0	55	98	0	209	59	7	2	30	1.39
15484624--15484657	5	7.0	5	86	6	52	61	0	0	38	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15485349--15485388	21	1.9	21	84	0	53	27	2	17	52	1.57
15487198--15487233	6	6.0	6	100	0	72	66	0	0	33	0.92
15487761--15487804	24	1.9	22	86	9	61	56	0	2	40	1.11
15487756--15487811	18	2.9	19	74	12	53	60	0	1	37	1.07
15496038--15496072	2	17.5	2	100	0	70	48	0	0	51	1.00
15496744--15496772	2	15.0	2	92	7	51	51	0	0	48	1.00
15504417--15504453	15	2.5	15	87	12	51	54	0	43	2	1.14
15505002--15505066	31	2.2	31	86	8	91	46	0	1	52	1.10
15505018--15505064	17	2.6	18	80	16	53	46	0	2	51	1.13
15505114--15505175	18	3.4	19	82	12	85	59	0	0	40	0.97
15505114--15505208	37	2.6	37	85	5	113	55	0	0	44	0.99
15505111--15505208	18	5.4	19	78	14	82	55	0	0	44	0.99
15505158--15505212	19	3.0	19	71	17	53	52	0	0	47	1.00
15505162--15505241	28	2.9	27	75	10	74	46	0	2	51	1.14
15506022--15506068	14	3.2	14	82	11	58	48	0	0	51	1.00
15506022--15506066	11	4.4	11	81	16	51	51	0	0	48	1.00
15506067--15506170	40	2.4	44	80	15	112	45	3	1	49	1.31
15506156--15506193	20	1.9	20	84	10	51	65	2	0	31	1.06
15510803--15510948	72	2.0	72	93	2	249	45	23	6	25	1.76
15512188--15512212	2	12.5	2	100	0	50	48	0	52	0	1.00
15513086--15513113	2	14.0	2	100	0	56	50	0	0	50	1.00
15529397--15529493	48	2.0	48	100	0	194	27	32	12	26	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15531493--15531552	24	2.5	26	78	13	65	55	0	0	45	0.99
15531481--15531571	26	3.7	25	72	17	84	51	0	0	48	1.00
15556692--15556734	22	2.0	22	85	0	59	60	0	2	37	1.10
15556859--15556916	26	2.3	26	79	5	66	36	0	1	62	1.06
15557008--15557044	14	2.6	15	87	8	51	29	0	2	67	1.04
15561660--15561686	3	9.0	3	100	0	54	0	33	0	66	0.92
15561671--15561741	27	2.5	28	77	9	72	8	30	7	53	1.58
15564252--15564290	11	3.5	11	82	0	51	48	0	2	48	1.15
15564241--15564289	22	2.2	20	77	19	53	46	0	2	51	1.12
15567604--15567639	18	2.0	18	88	0	54	44	0	0	55	0.99
15569379--15569403	2	12.5	2	100	0	50	48	0	0	52	1.00
15570604--15570801	104	1.9	102	94	2	351	23	18	12	45	1.83
15571082--15571111	13	2.4	13	94	5	53	90	3	6	0	0.56
15571082--15571124	18	2.2	19	84	12	52	86	6	4	2	0.79
15575902--15575941	2	20.5	2	85	14	57	2	0	45	52	1.14
15576842--15576882	20	2.0	20	100	0	82	24	24	14	36	1.93
15580417--15580450	16	2.1	17	88	5	52	20	2	2	73	1.09
15580480--15580527	25	2.0	25	88	8	73	31	0	2	66	1.03
15580823--15580864	21	2.0	21	90	0	66	66	0	2	30	1.04
15584984--15585021	5	7.6	5	90	0	58	2	23	0	73	0.95
15586263--15586289	2	13.5	2	100	0	54	51	0	0	48	1.00
15592743--15592782	20	2.0	21	90	5	64	67	5	0	27	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15592790--15592901	31	3.8	29	83	10	129	34	2	1	60	1.21
15592894--15592926	15	2.1	16	88	5	50	36	0	3	60	1.12
15595660--15595709	25	2.0	25	96	0	91	34	22	28	16	1.95
15597024--15597215	62	3.1	62	83	8	196	47	5	5	41	1.51
15599308--15599351	23	1.9	23	90	0	70	11	47	4	36	1.60
15599400--15599430	6	5.2	6	100	0	62	32	35	16	16	1.91
15612421--15612455	14	2.4	14	90	4	52	25	8	0	65	1.21
15612410--15612464	17	3.3	17	73	19	53	29	10	0	60	1.31
15617488--15617562	31	2.4	31	95	0	132	42	12	5	40	1.65
15619009--15619050	15	2.7	16	74	7	50	66	4	0	28	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120