genome.fa.s146.2.7.7.80.10.50.1000.116.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  116  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17788220--17788317	32	3.1	32	84	8	130	44	1	3	51	1.24
17788368--17788401	13	2.5	14	85	9	52	32	0	0	67	0.91
17800148--17800187	21	1.9	21	85	10	55	17	27	22	32	1.96
17803556--17803631	40	1.9	40	91	0	125	28	27	26	17	1.97
17808062--17808112	15	3.4	16	76	10	54	1	50	0	47	1.12
17808409--17808492	42	2.0	41	90	2	132	27	20	15	36	1.93
17814563--17814620	29	2.0	29	96	0	107	25	17	12	44	1.83
17826743--17826770	2	14.0	2	100	0	56	50	0	0	50	1.00
17827077--17827138	24	2.5	24	75	10	63	48	0	1	50	1.10
17833693--17833753	26	2.5	24	86	5	77	36	0	1	62	1.05
17833718--17833752	16	2.1	18	89	10	56	31	0	0	68	0.90
17833724--17833758	18	1.9	18	88	11	54	34	0	0	65	0.93
17833748--17833804	22	2.7	19	80	19	69	47	0	0	52	1.00
17833757--17833803	22	2.1	23	92	4	78	53	0	0	46	1.00
17834452--17834496	24	1.9	23	82	13	56	51	0	2	46	1.13
17834463--17834544	29	2.7	30	75	5	76	42	1	1	54	1.15
17838921--17838989	31	2.2	31	85	10	88	53	2	0	43	1.15
17838850--17838977	37	3.6	36	68	17	95	57	1	0	41	1.08
17840071--17840097	2	13.5	2	100	0	54	51	0	48	0	1.00
17841092--17841138	22	2.1	22	84	7	60	42	0	0	57	0.98
17842654--17842735	33	2.5	34	80	4	96	43	3	2	50	1.33
17842703--17842746	14	3.2	14	77	6	54	40	4	2	52	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17852262--17852315	22	2.5	22	82	11	67	33	1	0	64	1.04
17852281--17852309	14	2.0	15	93	6	51	31	0	0	68	0.89
17875318--17875357	19	2.1	19	100	0	80	55	10	15	20	1.68
17877600--17877658	3	19.7	3	92	0	64	3	67	6	22	1.29
17877600--17877661	21	3.0	21	87	0	88	4	67	6	20	1.32
17877857--17877886	12	2.4	12	94	5	51	63	6	3	26	1.35
17880615--17880671	22	2.5	23	83	11	73	57	1	0	40	1.09
17890192--17890224	17	1.9	17	93	0	57	30	0	0	69	0.88
17890181--17890238	21	2.6	21	84	10	71	34	1	0	63	1.04
17890286--17890325	2	20.0	2	89	0	62	47	2	2	47	1.29
17896677--17896716	20	2.0	21	85	5	55	70	0	15	15	1.18
17908635--17908669	4	8.8	4	93	0	61	80	0	20	0	0.72
17909185--17909210	2	13.0	2	100	0	52	50	0	0	50	1.00
17913979--17914105	63	2.0	63	92	0	209	35	11	28	24	1.91
17920868--17920910	21	2.0	21	81	0	50	48	9	0	41	1.35
17925974--17926002	2	14.5	2	100	0	58	51	0	0	48	1.00
17926933--17926967	18	2.0	17	88	5	52	22	8	2	65	1.34
17936344--17936432	44	2.0	44	95	0	160	31	14	26	26	1.95
17949910--17950157	58	4.3	57	81	5	268	38	12	6	42	1.69
17949910--17950259	115	3.2	115	79	11	363	39	11	6	42	1.67
17950111--17950202	45	2.0	45	89	4	141	42	8	7	41	1.64
17950053--17950322	102	2.6	103	91	2	445	39	10	6	42	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17950214--17950304	45	2.0	43	83	6	110	43	7	6	41	1.59
17950385--17950436	24	2.2	24	82	6	61	78	9	1	9	1.03
17963485--17963549	32	2.0	32	96	0	121	30	18	10	40	1.85
17964452--17964478	4	6.8	4	100	0	54	77	0	0	22	0.76
17968364--17968428	28	2.4	28	80	16	75	55	0	0	44	0.99
17971257--17971306	18	2.8	18	93	0	82	24	22	16	38	1.93
17975796--17976067	138	2.0	138	96	2	503	51	6	9	31	1.62
17980040--17980180	69	2.0	70	81	1	167	50	13	18	17	1.78
17980040--17980165	35	3.6	35	82	2	146	50	12	18	18	1.77
17986566--17986595	3	10.0	3	100	0	60	33	0	0	66	0.92
17986597--17986659	24	2.6	24	80	7	74	33	3	12	50	1.56
17986728--17986793	32	2.0	34	82	11	84	36	3	7	53	1.45
17993096--17993190	50	1.9	50	97	0	181	37	21	20	21	1.94
17997274--17997324	26	2.0	26	96	0	93	19	19	9	50	1.75
17999952--18000009	31	1.9	31	82	10	75	24	3	6	65	1.33
18011303--18011339	18	2.0	19	89	5	58	35	2	0	62	1.10
18021750--18021879	59	2.2	58	81	6	147	44	3	3	49	1.33
18021792--18021834	22	2.0	22	85	0	59	44	0	0	55	0.99
18021791--18021843	22	2.3	23	77	9	54	49	0	0	50	1.00
18021787--18021874	29	3.1	28	71	11	79	50	1	0	48	1.08
18021927--18021974	19	2.5	19	96	0	87	43	0	0	56	0.99
18023856--18023919	19	3.4	18	76	6	65	46	0	1	51	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18041597--18041621	2	12.5	2	100	0	50	52	0	0	48	1.00
18041780--18041864	35	2.4	35	82	7	91	42	0	4	52	1.22
18041780--18041852	18	3.9	19	74	20	57	39	0	5	54	1.23
18050921--18050961	21	1.9	22	90	5	66	36	0	0	63	0.95
18059093--18059149	27	2.1	27	86	0	78	26	10	19	43	1.83
18061479--18061518	14	2.9	14	96	0	71	7	7	0	85	0.76
18061594--18061635	13	3.5	13	81	15	54	28	7	0	64	1.20
18068503--18068545	20	2.3	18	84	8	50	9	2	4	83	0.87
18068593--18068793	60	3.4	60	88	4	275	45	6	11	35	1.67
18070791--18070843	8	6.8	8	78	22	51	9	11	0	79	0.94
18070791--18070844	9	5.7	9	83	16	65	9	11	0	79	0.93
18070791--18070850	20	3.0	20	85	7	79	10	11	0	78	0.97
18070840--18070875	18	2.0	18	89	10	56	8	22	0	69	1.15
18071202--18071230	10	2.7	11	94	5	51	17	0	0	82	0.66
18074751--18074973	59	3.8	58	84	8	301	34	12	7	45	1.69
18074751--18074980	116	2.0	119	90	2	367	34	11	7	46	1.68
18074997--18075062	11	6.6	10	75	16	57	80	1	1	16	0.87
18075000--18075145	18	8.6	18	68	10	83	76	4	2	17	1.07
18075002--18075147	27	5.3	27	69	18	72	75	4	2	17	1.08
18075002--18075053	28	1.9	26	88	7	77	80	1	1	15	0.88
18075460--18075512	20	2.7	19	80	5	61	33	13	16	35	1.88
18075678--18075707	11	2.9	10	90	9	51	60	10	0	30	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18076079--18076226	18	8.3	17	70	16	70	70	3	0	25	1.02
18076079--18076222	23	6.4	21	65	23	71	70	3	0	25	1.02
18076100--18076156	3	19.7	3	76	16	50	70	0	0	29	0.88
18076094--18076177	42	2.1	43	82	13	115	69	1	0	29	0.97
18076082--18076185	34	2.9	36	77	15	115	69	2	0	27	1.03
18076079--18076226	8	19.6	8	72	17	72	70	3	0	25	1.02
18076079--18076226	11	13.1	12	70	19	72	70	3	0	25	1.02
18076147--18076275	49	2.6	50	78	7	120	65	6	0	27	1.21
18076079--18076299	34	6.4	33	70	19	107	69	4	0	25	1.13
18076094--18076306	8	25.1	8	67	25	54	69	4	0	25	1.13
18076465--18076833	39	9.5	39	78	3	287	45	19	8	26	1.80
18076465--18076833	79	4.7	78	81	3	375	45	19	8	26	1.80
18076506--18076827	118	2.7	118	81	3	355	45	20	8	26	1.79
18081770--18081795	13	2.0	13	100	0	52	0	15	0	84	0.62
18084863--18084910	3	15.7	3	95	4	87	66	0	0	33	0.92
18089553--18089606	26	2.1	25	83	13	65	37	5	5	51	1.49
18090107--18090150	21	2.0	22	91	4	72	61	13	0	25	1.32
18090401--18090511	8	15.9	7	71	18	72	67	0	3	28	1.07
18090401--18090512	4	27.8	4	67	18	54	67	0	3	28	1.07
18090436--18090524	28	3.3	26	74	16	76	71	1	2	24	1.04
18090407--18090520	21	5.9	21	71	20	79	68	0	2	28	1.09
18090784--18090960	44	4.0	44	80	0	165	42	18	15	23	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18090783--18090959	88	2.0	89	82	5	216	42	18	15	24	1.88
18090938--18091173	42	5.7	41	78	4	195	41	18	13	26	1.88
18090967--18091173	83	2.5	83	79	5	195	41	17	14	27	1.88
18091476--18091569	43	2.3	40	87	5	125	35	15	11	37	1.85
18092472--18092561	31	3.0	30	82	11	87	10	18	0	71	1.14
18092504--18092563	30	2.0	30	93	3	102	8	18	0	73	1.08
18092453--18092550	40	2.5	40	74	15	96	10	14	0	75	1.04
18092453--18092552	39	2.5	39	76	10	105	10	15	0	75	1.05
18096052--18096108	27	2.1	27	86	0	78	22	12	21	43	1.85
18099332--18099368	19	1.9	19	88	0	56	24	43	8	24	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120