genome.fa.s146.2.7.7.80.10.50.1000.91.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  91  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12023050--12023091	11	3.8	12	78	15	54	23	0	23	52	1.47
12023052--12023094	22	2.0	22	90	9	70	25	0	23	51	1.49
12023115--12023271	52	3.0	52	85	1	163	40	8	24	26	1.83
12026487--12026566	42	1.9	42	87	2	117	55	1	2	41	1.21
12027430--12027458	2	14.5	2	100	0	58	51	0	0	48	1.00
12031909--12031952	16	2.7	15	80	16	52	72	0	9	18	1.10
12031907--12031945	17	2.4	16	83	8	51	71	0	10	17	1.12
12032388--12032437	17	2.9	16	85	8	55	22	6	0	72	1.07
12032388--12032442	22	2.5	22	80	14	60	21	5	0	72	1.04
12042081--12042320	119	2.0	119	100	0	480	38	8	7	45	1.63
12042334--12042369	19	1.9	18	88	5	54	44	0	2	52	1.15
12042300--12042364	32	2.0	34	82	11	82	38	3	3	55	1.31
12053405--12053453	25	2.0	25	95	0	89	26	22	10	40	1.86
12066301--12066353	26	2.0	26	88	0	79	47	3	1	47	1.31
12066372--12066405	17	2.0	17	94	0	59	55	5	0	38	1.24
12066463--12066520	12	5.3	12	72	27	58	50	0	0	50	1.00
12066400--12066550	73	2.1	72	79	10	168	50	0	0	47	1.10
12066461--12066543	29	2.8	28	82	8	94	48	0	0	51	1.00
12076628--12076657	15	2.0	15	100	0	60	13	6	20	60	1.55
12076988--12077091	48	2.2	49	82	3	122	45	7	16	30	1.75
12077041--12077171	56	2.4	55	82	1	154	44	12	16	27	1.83
12078130--12078166	18	2.1	18	100	0	74	56	0	37	5	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12080367--12080405	16	2.4	16	82	0	51	38	15	7	38	1.76
12081348--12081503	71	2.2	71	81	2	168	51	4	5	38	1.44
12084191--12084222	3	10.7	3	93	0	55	65	0	3	31	1.08
12087166--12087238	33	2.1	36	82	12	91	10	2	9	76	1.11
12087203--12087254	26	2.1	26	89	7	81	15	1	11	71	1.23
12087672--12088598	35	25.7	35	70	12	466	43	13	22	20	1.87
12087673--12088666	73	13.7	73	82	5	988	43	13	22	21	1.87
12087958--12088274	34	8.9	33	66	15	116	42	13	23	20	1.87
12087675--12088598	216	4.3	214	80	7	955	43	13	22	20	1.86
12089694--12089780	1	87.0	1	76	0	75	10	2	0	87	0.63
12089694--12089779	8	10.6	8	85	9	113	10	2	0	87	0.64
12089694--12089778	15	5.9	15	80	15	99	10	2	0	87	0.64
12089694--12089781	23	4.0	22	83	5	97	11	2	0	86	0.66
12089694--12089767	31	2.4	30	90	6	112	10	1	0	87	0.60
12101479--12101521	22	1.9	23	85	4	61	48	9	0	41	1.35
12102504--12102580	20	3.7	19	81	10	64	3	3	10	81	0.94
12102523--12102596	26	2.9	25	86	7	96	6	1	10	81	0.94
12102528--12102599	33	2.2	32	85	2	90	8	1	12	77	1.04
12102545--12102629	33	2.7	32	82	12	95	12	1	11	74	1.14
12103764--12103807	19	2.4	18	82	17	56	54	0	0	45	0.99
12103769--12103813	21	2.2	20	84	11	56	62	0	0	37	0.96
12103768--12103814	20	2.3	21	82	10	62	59	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12106577--12106632	24	2.3	25	79	11	64	10	1	12	75	1.14
12107086--12107905	71	11.9	70	86	8	1091	42	13	22	20	1.87
12107089--12107907	35	23.8	36	69	17	289	42	13	22	20	1.87
12108951--12108984	1	34.0	1	93	0	59	2	0	0	97	0.19
12121693--12121732	18	2.2	18	86	0	53	7	5	0	87	0.66
12121692--12121806	33	3.2	34	78	11	90	14	2	5	77	1.05
12121708--12121773	9	6.2	11	79	19	61	10	0	6	83	0.81
12121716--12121810	37	2.4	38	76	11	95	14	1	7	76	1.05
12121709--12121809	43	2.4	42	78	6	105	13	0	5	79	0.97
12122169--12122269	50	2.0	50	86	3	141	27	18	3	49	1.65
12124315--12124364	19	2.6	19	93	0	82	30	18	10	42	1.82
12131580--12131615	9	3.9	9	89	7	54	88	0	5	5	0.61
12132691--12132939	41	5.8	41	80	11	230	26	13	19	40	1.89
12132729--12132897	92	1.8	91	89	1	266	26	13	20	39	1.90
12132819--12132957	42	3.2	43	79	7	147	22	12	18	46	1.83
12133174--12133221	23	2.1	22	78	21	55	70	0	10	18	1.15
12133860--12133899	4	9.8	4	83	5	53	22	0	5	72	1.04
12133857--12133918	21	3.0	21	82	13	76	24	0	8	67	1.17
12133859--12133923	25	2.6	26	80	11	73	24	0	7	67	1.16
12133927--12134272	191	1.8	190	83	6	459	45	6	11	36	1.67
12139644--12139700	30	1.9	30	85	3	80	47	3	12	36	1.58
12140009--12140053	22	2.0	23	86	4	65	26	2	2	68	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12141957--12142006	18	2.7	19	76	14	59	62	0	2	36	1.07
12148172--12148203	2	16.0	2	100	0	64	50	0	0	50	1.00
12150488--12150522	16	2.1	17	94	5	63	71	2	0	25	1.00
12150772--12151399	44	14.4	43	81	5	550	44	17	11	26	1.82
12150785--12151364	305	1.9	305	92	0	973	44	17	11	26	1.83
12151661--12151718	27	2.1	27	83	3	71	36	13	15	34	1.87
12151747--12151789	21	2.0	21	86	0	59	30	16	16	37	1.91
12152056--12152159	21	5.1	20	79	13	122	42	16	9	31	1.80
12152055--12152159	40	2.5	41	89	4	149	42	16	9	31	1.80
12152629--12152775	53	2.8	53	80	4	179	28	21	12	37	1.90
12153819--12153883	16	4.1	16	79	18	57	6	10	3	80	1.01
12153833--12153879	19	2.5	20	83	13	55	4	8	4	82	0.91
12153819--12153883	15	4.1	16	78	13	73	6	10	3	80	1.01
12158702--12158758	24	2.3	24	80	14	64	68	14	5	12	1.37
12159721--12159798	29	2.7	28	80	2	84	50	10	10	29	1.69
12165138--12165181	10	4.7	9	80	5	52	50	4	13	31	1.62
12167721--12167769	23	2.1	23	92	0	80	26	14	14	44	1.83
12167930--12167976	3	15.7	3	90	0	76	61	0	4	34	1.15
12167930--12167976	15	3.1	15	96	0	85	61	0	4	34	1.15
12168143--12168284	44	3.3	44	72	9	121	34	14	14	35	1.88
12168324--12168486	49	3.3	50	78	9	165	39	15	10	34	1.81
12172812--12172865	26	2.1	26	86	6	74	70	0	14	14	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12172812--12172853	12	3.2	13	86	10	59	69	0	16	14	1.20
12172826--12172865	18	2.2	18	86	4	53	75	0	12	12	1.06
12175155--12175239	3	28.7	3	83	9	104	29	1	4	64	1.21
12175483--12175547	30	2.2	28	81	10	67	26	6	1	66	1.24
12175674--12175720	25	1.9	25	83	12	62	76	4	0	19	0.95
12175672--12175731	23	2.7	24	80	10	65	73	5	0	21	1.02
12176720--12176753	3	11.0	3	93	6	59	64	0	0	35	0.94
12178228--12179727	161	9.3	161	81	2	1445	43	15	8	32	1.77
12178214--12179728	483	3.1	483	84	2	1770	43	15	8	32	1.77
12183413--12183442	9	3.3	9	100	0	60	43	10	0	46	1.37
12183708--12183736	2	14.5	2	100	0	58	51	0	0	48	1.00
12187089--12187229	68	2.1	68	90	0	228	49	8	7	34	1.60
12187768--12187818	16	3.2	16	86	5	59	43	1	1	52	1.23
12187879--12187905	2	13.5	2	100	0	54	51	0	0	48	1.00
12187990--12188032	23	1.9	22	85	4	59	37	2	2	58	1.24
12189700--12189757	22	2.7	21	86	7	80	65	0	1	32	1.03
12191385--12191419	2	17.5	2	100	0	70	48	0	0	51	1.00
12199004--12199282	157	1.8	155	81	7	354	15	27	4	51	1.62
12199897--12199921	11	2.3	11	100	0	50	16	0	8	76	1.02
12200147--12200203	30	1.9	30	88	0	87	38	19	12	29	1.88
12200987--12201038	25	2.1	25	88	0	77	50	3	19	26	1.65
12205126--12205216	31	2.9	31	83	6	105	48	0	1	50	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12205126--12205211	38	2.3	38	82	9	106	46	0	1	52	1.08
12205502--12205536	13	2.6	13	90	4	52	65	2	0	31	1.07
12216170--12216225	21	2.8	20	76	15	53	44	12	25	17	1.84
12222760--12222802	10	4.2	10	85	5	50	48	0	0	51	1.00
12222760--12222802	20	2.1	21	86	4	61	48	0	0	51	1.00
12222979--12223012	9	3.4	10	88	12	52	29	0	0	70	0.87
12227463--12227584	24	5.2	23	74	9	95	44	4	15	35	1.68
12229367--12229478	59	1.9	59	92	0	188	14	24	25	36	1.93
12229342--12229499	21	7.7	21	80	5	171	17	24	24	34	1.96
12230250--12230331	29	2.8	29	80	12	87	31	2	2	63	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120