genome.fa.s146.2.7.7.80.10.50.1000.78.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  78  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9819505--9819551	24	2.0	24	91	0	76	53	8	4	34	1.51
9819678--9819720	16	2.8	15	75	6	50	67	2	11	18	1.32
9819717--9819758	16	2.6	16	92	3	66	85	7	0	7	0.73
9820663--9820699	17	2.2	17	90	0	56	16	10	2	70	1.27
9820710--9820780	12	5.8	12	70	8	54	69	9	1	19	1.25
9820738--9820785	17	2.8	17	87	3	60	64	12	2	20	1.37
9820710--9820794	18	4.7	18	79	5	91	65	10	1	22	1.30
9820736--9820792	29	1.9	30	85	3	80	64	10	1	22	1.34
9821429--9821477	17	2.9	17	81	0	62	51	18	12	18	1.76
9827832--9827894	23	2.8	23	90	2	101	49	9	6	34	1.61
9827832--9827909	23	3.6	21	80	14	79	48	12	6	32	1.67
9828025--9828084	24	2.5	24	83	0	75	51	10	6	31	1.61
9828075--9828119	24	1.9	24	86	4	65	53	11	4	31	1.56
9828070--9828129	24	2.5	24	76	13	61	51	11	6	30	1.64
9828269--9828302	6	5.7	6	89	10	52	82	2	14	0	0.79
9828269--9828302	11	2.9	11	91	8	50	82	2	14	0	0.79
9829264--9829308	13	3.4	13	81	6	54	71	11	0	17	1.14
9835451--9835494	21	2.1	21	86	0	61	47	2	4	45	1.35
9840549--9840626	34	2.3	34	84	4	104	39	12	8	38	1.75
9840745--9840775	16	1.9	16	93	0	53	35	9	6	48	1.62
9840802--9840831	15	1.9	16	93	6	53	66	0	0	33	0.92
9842623--9843286	330	2.0	330	91	0	1060	38	13	19	28	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9851952--9852005	24	2.2	26	87	12	78	48	0	3	48	1.19
9851974--9852027	17	3.3	17	70	15	51	51	0	1	46	1.11
9852526--9852567	15	2.7	16	77	7	50	35	14	7	42	1.73
9862640--9862680	21	2.1	20	86	13	59	34	4	9	51	1.56
9863392--9863451	16	3.8	16	75	20	54	16	13	13	56	1.67
9879217--9879248	15	2.1	15	94	0	55	31	25	15	28	1.96
9881488--9881516	12	2.3	13	94	5	51	75	3	6	13	1.13
9882163--9882459	104	3.2	90	80	8	245	36	20	12	30	1.90
9882257--9882489	104	2.3	101	87	2	322	33	24	11	30	1.91
9882457--9882581	51	2.4	53	84	5	157	32	25	8	32	1.87
9882851--9882897	18	2.6	18	86	0	58	23	21	14	40	1.90
9883173--9883612	105	4.2	106	82	5	489	33	14	15	36	1.88
9883173--9883612	210	2.1	210	84	3	573	33	14	15	36	1.88
9883603--9883782	37	4.6	39	78	8	179	23	15	22	38	1.92
9883599--9883774	78	2.2	79	90	1	273	23	15	21	39	1.92
9888334--9888388	26	2.1	26	86	0	74	29	14	10	45	1.79
9888822--9888864	21	2.0	21	86	8	61	44	4	11	39	1.62
9892558--9892644	41	2.1	43	85	12	119	75	9	6	8	1.18
9892626--9892654	10	2.9	10	100	0	58	82	0	10	6	0.83
9899635--9899705	30	2.4	30	87	0	106	38	16	15	29	1.90
9904040--9904074	17	2.1	17	94	0	61	28	14	25	31	1.95
9920461--9920921	128	3.6	130	83	4	551	49	8	9	31	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9927154--9927221	31	2.2	32	81	7	86	35	14	8	41	1.77
9927856--9927905	26	1.9	26	83	0	64	32	2	16	50	1.56
9927893--9927957	30	2.2	29	83	10	78	24	0	12	63	1.29
9927951--9928001	12	4.4	12	79	16	63	23	5	11	58	1.55
9927951--9927999	24	2.0	24	96	0	89	22	6	12	59	1.55
9931403--9931455	26	2.0	26	88	0	79	30	11	16	41	1.84
9939797--9939829	16	2.1	16	94	0	57	27	18	15	39	1.90
9940289--9940390	40	2.5	40	87	1	132	22	12	22	42	1.87
9940584--9940629	18	2.4	18	85	10	56	15	4	0	80	0.86
9940607--9940650	8	5.5	8	86	0	61	13	4	0	81	0.83
9940584--9940643	10	6.0	10	73	13	52	16	3	0	80	0.85
9940599--9940662	29	2.3	29	84	15	82	14	4	1	79	0.96
9946197--9946241	21	2.1	22	87	4	65	60	0	4	35	1.17
9946197--9946255	27	2.2	26	82	8	66	61	0	3	35	1.13
9947507--9947572	26	2.5	27	80	2	80	72	0	6	21	1.05
9947494--9947584	18	5.1	18	74	22	68	70	0	7	21	1.12
9948430--9948565	3	46.3	3	75	12	122	61	1	3	33	1.23
9949012--9949224	114	1.9	114	83	7	281	38	12	24	24	1.90
9949330--9949452	60	2.1	59	82	10	144	36	10	26	26	1.89
9960947--9961029	33	2.5	33	81	11	100	72	1	3	22	1.08
9960979--9961026	23	2.1	22	85	11	62	72	2	2	22	1.05
9960973--9961048	15	5.0	15	77	15	59	75	2	3	18	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9961887--9961973	3	31.0	3	76	13	87	65	1	2	31	1.12
9961887--9961969	37	2.2	37	82	4	96	66	1	2	30	1.12
9961895--9961969	20	3.8	20	77	12	75	65	1	2	30	1.15
9962098--9962137	16	2.3	19	80	20	52	50	12	0	37	1.41
9971198--9971304	54	2.0	54	84	0	142	32	14	17	35	1.90
9977624--9977680	17	3.4	17	70	7	53	54	5	0	40	1.23
9977622--9977697	34	2.3	33	88	4	116	55	7	0	36	1.29
9983913--9984066	77	2.0	77	94	0	272	25	12	16	44	1.83
9989697--9989740	22	2.0	22	95	0	79	43	13	11	31	1.80
9993378--9993433	23	2.4	23	100	0	112	42	17	26	12	1.85
9993581--9993624	22	2.0	22	95	0	79	43	13	11	31	1.80
9999331--9999360	2	15.0	2	100	0	60	50	0	0	50	1.00
10002138--10002175	2	19.0	2	94	0	67	47	0	2	50	1.15
10006610--10006688	38	2.1	38	100	0	158	44	7	2	45	1.45
10006995--10007075	29	2.9	30	79	17	77	22	8	13	55	1.65
10007012--10007095	29	2.9	29	83	3	107	21	9	14	54	1.68
10008069--10008323	132	1.9	133	92	2	433	41	8	11	38	1.72
10009722--10010055	165	2.0	165	84	0	434	37	11	13	37	1.81
10020724--10020804	22	3.6	22	76	15	76	43	6	2	48	1.41
10020868--10020927	28	2.1	28	81	3	66	33	6	1	58	1.34
10034454--10034584	30	4.4	30	83	6	160	38	6	2	52	1.39
10034429--10034585	30	5.3	30	75	13	137	37	5	1	54	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10034607--10034672	29	2.2	31	86	7	93	63	0	3	33	1.10
10040967--10041000	14	2.3	15	90	5	52	50	0	0	50	1.00
10052570--10052618	24	2.1	23	81	11	55	34	12	8	44	1.71
10052505--10052622	48	2.5	48	75	8	114	34	10	9	45	1.70
10053083--10053167	38	2.3	38	89	2	127	51	8	8	31	1.61
10053101--10053273	87	2.0	87	93	0	292	50	11	8	28	1.68
10055359--10055605	121	2.0	121	93	0	422	31	19	11	38	1.87
10059631--10059680	15	3.3	15	77	0	55	24	0	0	76	0.80
10059633--10059674	22	1.9	22	85	9	59	28	0	0	71	0.86
10060141--10060481	110	3.2	108	74	17	298	37	7	10	44	1.67
10060238--10060438	101	2.0	100	81	6	237	38	7	10	42	1.69
10061277--10061321	23	2.0	23	86	0	63	37	11	8	42	1.72
10062248--10062282	16	2.2	16	89	0	52	57	2	0	40	1.14
10063947--10063983	16	2.3	17	86	9	51	70	5	8	16	1.30
10070421--10070606	62	3.0	62	65	10	144	30	16	15	37	1.90
10070367--10070841	125	3.8	125	82	3	537	35	15	13	36	1.86
10075189--10076492	292	4.5	292	80	4	1271	37	14	14	33	1.87
10075189--10076492	583	2.2	581	81	4	1462	37	14	14	33	1.87
10084161--10084207	24	2.0	24	83	8	60	55	0	2	42	1.12
10084299--10084475	55	3.2	56	80	4	180	46	11	13	28	1.77
10087909--10087948	20	1.9	22	85	10	57	52	2	2	42	1.28
10087997--10088034	19	2.0	19	90	10	60	10	5	0	84	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10088145--10088173	15	1.9	15	100	0	58	55	6	0	37	1.27
10090444--10090587	67	2.1	67	93	1	243	34	15	9	39	1.81
10103577--10103602	3	8.7	3	100	0	52	69	0	0	30	0.89
10104941--10104988	19	2.5	20	80	13	55	39	4	2	54	1.32
10106178--10106210	14	2.4	14	90	5	50	45	0	3	51	1.16
10109288--10109318	14	2.2	14	100	0	62	0	38	0	61	0.96
10110407--10110440	3	11.3	3	100	0	68	67	0	0	32	0.91
10110900--10110945	24	1.9	24	86	0	65	78	15	0	6	0.95
10111745--10111783	20	1.9	21	89	5	62	69	5	5	20	1.28
10112057--10112152	30	3.2	29	85	11	131	44	25	3	27	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120