genome.fa.s146.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  5  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
437055--437107	26	2.0	26	96	0	97	28	26	18	26	1.98
437962--438015	26	2.1	26	89	6	83	29	25	18	25	1.98
439754--439806	26	2.0	26	96	0	97	30	28	16	24	1.97
440213--440264	26	2.0	26	88	0	77	51	17	9	21	1.73
440641--440696	26	2.2	26	90	0	85	35	23	12	28	1.91
441342--441696	159	2.2	159	83	1	424	22	27	27	23	1.99
441515--441909	185	2.1	185	84	0	511	22	27	28	22	1.99
441855--441907	26	2.0	26	88	0	79	30	24	18	26	1.98
442578--442932	159	2.2	159	83	1	424	22	27	27	23	1.99
443091--443143	26	2.0	26	88	0	79	30	24	18	26	1.98
443607--443839	115	2.0	115	88	0	340	41	16	19	22	1.90
444113--444165	26	2.0	26	88	0	79	30	22	15	32	1.94
444576--447075	899	2.8	888	87	4	3530	25	24	24	25	2.00
446308--447795	715	2.1	713	88	2	2142	26	23	24	25	2.00
447898--447950	26	2.0	26	96	0	97	26	24	20	28	1.99
447020--450631	878	4.0	885	81	7	4096	26	25	23	25	2.00
450583--450657	26	2.9	26	91	0	123	26	29	18	25	1.98
450976--451028	26	2.0	26	92	0	88	28	20	20	30	1.98
453177--453229	26	2.0	26	100	0	106	26	26	20	26	1.99
454009--454061	26	2.0	26	100	0	106	26	26	20	26	1.99
454684--455044	159	2.3	159	83	2	431	16	30	30	22	1.96
455050--455128	26	3.0	26	94	0	140	29	25	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
456816--456868	26	2.0	26	92	0	88	28	26	20	24	1.99
457703--457755	26	2.0	26	96	0	97	26	24	20	28	1.99
460236--460276	15	2.7	15	92	3	64	26	19	39	14	1.90
460363--460415	26	2.0	26	88	0	79	28	22	20	28	1.99
461268--461319	26	2.0	26	96	0	95	28	26	17	26	1.97
459910--466181	905	6.8	899	75	11	5184	25	24	24	25	2.00
462169--462221	26	2.0	26	88	0	79	28	22	18	30	1.98
462905--463288	159	2.4	157	82	5	416	19	27	30	22	1.98
464110--464162	26	2.0	26	92	0	88	26	30	18	24	1.98
463241--466181	909	3.3	897	83	6	3708	25	24	25	25	2.00
465875--465926	26	2.0	26	96	0	95	32	25	15	26	1.95
467079--467131	26	2.0	26	92	0	88	28	24	18	28	1.98
466193--469189	900	3.4	899	87	3	4114	24	24	25	25	2.00
469677--469729	26	2.0	26	88	0	79	28	22	20	28	1.99
470572--470624	26	2.0	26	96	0	97	22	28	20	28	1.99
469189--472472	899	3.7	895	87	2	4483	26	24	23	24	2.00
471470--471522	26	2.0	26	96	0	97	26	24	20	28	1.99
469193--472472	898	3.7	897	87	2	4470	26	24	23	24	2.00
472373--472425	26	2.0	26	88	0	79	32	24	18	24	1.97
473927--473979	26	2.0	26	96	0	97	24	26	20	28	1.99
473768--474186	185	2.3	185	85	0	541	22	27	26	23	2.00
475842--475894	26	2.0	26	92	0	88	30	26	16	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
475735--476763	521	2.0	521	89	1	1576	20	25	27	26	1.99
477267--477319	26	2.0	26	96	0	97	26	24	20	28	1.99
477526--477578	26	2.0	26	100	0	106	26	26	20	26	1.99
478409--478461	26	2.0	26	92	0	88	26	22	20	30	1.98
479060--479093	4	8.5	4	86	0	50	0	67	26	5	1.13
479059--479093	12	2.9	12	100	0	70	0	65	25	8	1.21
479273--479323	26	2.0	26	92	0	84	25	23	19	31	1.98
478872--483606	903	5.3	900	86	4	6399	25	25	24	25	2.00
482837--482889	26	2.0	26	92	0	88	30	26	16	26	1.97
481075--483606	900	2.8	892	88	2	3625	25	24	24	25	2.00
483580--483632	26	2.0	26	96	0	97	26	26	18	28	1.98
482826--484350	744	2.1	743	91	0	2485	26	24	24	25	2.00
485183--485228	20	2.3	20	84	0	56	4	56	23	15	1.57
485410--485462	26	2.0	26	88	0	79	30	24	18	26	1.98
487776--487828	26	2.0	26	96	0	97	28	26	18	26	1.98
486902--490626	930	4.2	892	83	6	4601	25	25	24	24	2.00
490462--490514	26	2.0	26	92	0	88	28	24	18	28	1.98
490721--490773	26	2.0	26	96	0	97	24	26	22	26	2.00
491605--491657	26	2.0	26	92	0	88	26	22	20	30	1.98
492462--492531	26	2.7	26	93	0	113	27	24	17	31	1.97
494127--494179	26	2.0	26	96	0	97	26	28	20	24	1.99
494820--494872	26	2.0	26	96	0	97	26	28	20	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
495554--495606	26	2.0	26	96	0	97	26	28	20	24	1.99
494588--496306	732	2.4	734	93	0	2912	26	25	22	25	2.00
497341--497394	26	2.1	26	96	0	99	27	27	20	24	1.99
495530--499393	878	4.3	895	84	5	4756	25	25	24	25	2.00
499106--499182	26	3.0	25	84	7	100	32	25	15	25	1.96
499580--499632	26	2.0	26	96	0	97	30	24	16	28	1.97
500470--500522	26	2.0	26	92	7	90	30	26	16	26	1.97
499713--504761	901	5.7	881	85	5	6280	26	24	23	25	2.00
506534--506637	26	4.0	26	92	2	165	28	25	16	28	1.97
506889--506941	26	2.0	26	96	0	97	28	26	18	26	1.98
508667--508722	26	2.2	26	93	0	94	28	25	19	26	1.99
509572--509624	26	2.0	26	88	0	79	28	26	20	24	1.99
506699--510269	902	4.0	899	86	3	4841	25	24	24	25	2.00
510326--510378	26	2.0	26	96	0	97	28	28	16	26	1.97
509528--511007	754	2.0	750	88	2	2243	26	23	23	26	2.00
511221--511324	26	4.0	26	93	2	174	29	25	15	28	1.96
511327--516001	877	5.3	874	85	5	5875	25	25	23	25	2.00
513488--513540	26	2.0	26	92	0	88	26	26	20	26	1.99
514362--514414	26	2.0	26	96	0	97	28	24	20	26	1.99
516949--517027	26	3.0	26	92	0	131	30	25	16	27	1.97
517873--517923	26	2.0	26	100	0	102	27	23	21	27	1.99
516083--520474	927	4.8	894	85	5	5293	26	24	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
518778--518829	25	2.0	26	88	3	79	26	25	21	26	1.99
519683--519746	26	2.4	27	84	10	78	31	25	15	28	1.96
518795--520469	921	1.8	920	87	5	2500	26	24	22	25	2.00
523882--523934	26	2.0	26	92	7	90	26	26	18	28	1.98
526210--526269	26	2.4	26	86	5	79	28	23	20	28	1.99
527116--527166	26	2.0	26	88	0	75	25	23	21	29	1.99
528017--528068	26	2.0	26	100	0	104	26	26	19	26	1.99
528920--528972	26	2.0	26	100	0	106	26	26	20	26	1.99
524272--535502	906	12.5	905	77	8	9869	25	25	24	25	2.00
529825--529874	26	1.9	26	91	0	82	26	24	20	30	1.98
531348--531400	26	2.0	26	96	0	97	26	24	20	28	1.99
534331--534383	26	2.0	26	85	0	70	28	24	18	28	1.98
535209--535261	26	2.0	26	96	0	97	26	24	20	28	1.99
537728--537780	26	2.0	26	92	0	88	26	26	22	24	2.00
535952--544209	903	9.3	903	84	4	10471	25	24	24	25	2.00
539510--539562	26	2.0	26	92	0	88	26	26	22	24	2.00
542170--542222	26	2.0	26	96	0	97	26	24	20	28	1.99
543951--544003	26	2.0	26	92	0	88	28	24	18	28	1.98
543775--544679	473	1.9	472	87	1	1330	19	26	30	23	1.98
546167--546219	26	2.0	26	96	0	97	26	28	20	24	1.99
544396--550433	900	6.9	867	82	7	6612	26	24	24	25	2.00
547067--547119	26	2.0	26	88	0	79	26	20	22	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
547966--548018	26	2.0	26	85	0	70	32	24	18	24	1.97
549706--549757	26	2.0	26	92	0	86	28	25	17	28	1.97
550407--550459	26	2.0	26	96	0	97	26	24	20	28	1.99
551299--551351	26	2.0	26	96	0	97	28	26	18	26	1.98
552200--552252	26	2.0	26	92	0	88	30	24	18	26	1.98
553081--553131	26	2.0	26	96	0	93	31	21	17	29	1.96
550383--553845	891	3.9	887	86	4	4641	25	24	24	25	2.00
553819--553871	26	2.0	26	100	0	106	26	26	20	26	1.99
555606--555658	26	2.0	26	88	0	79	30	28	16	24	1.97
556508--556560	26	2.0	26	96	0	97	28	26	18	26	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120