genome.fa.s146.2.7.7.80.10.50.1000.74.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  74  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9147750--9148078	145	2.3	146	82	10	392	35	13	10	41	1.78
9148370--9148413	22	2.0	22	100	0	88	22	9	40	27	1.84
9149913--9150127	105	2.0	106	80	7	249	41	7	24	26	1.81
9162860--9162961	2	52.5	2	77	5	102	40	0	0	58	1.04
9162858--9162967	6	18.3	6	87	6	125	38	0	0	60	1.03
9163301--9163332	2	16.0	2	93	0	55	53	0	0	46	1.00
9163504--9163554	26	2.0	26	84	7	68	56	7	7	27	1.55
9163568--9163615	6	8.0	6	80	0	51	27	0	6	66	1.15
9163556--9163609	24	2.3	24	81	12	67	29	0	5	64	1.16
9163568--9163614	18	2.6	18	86	0	67	25	0	6	68	1.13
9165083--9165112	14	2.1	14	93	0	51	23	6	13	56	1.60
9165108--9165311	23	8.8	24	71	15	144	37	2	4	55	1.35
9165109--9165150	20	2.1	20	91	8	68	40	4	2	52	1.35
9165198--9165338	11	12.9	11	68	24	70	39	1	3	56	1.26
9165198--9165343	42	3.3	43	80	11	154	38	1	3	56	1.24
9165291--9165385	18	4.9	18	70	18	57	30	1	10	57	1.39
9165281--9165379	42	2.4	42	89	3	148	31	1	9	58	1.36
9165420--9165495	35	2.2	35	92	2	127	26	3	15	53	1.59
9165433--9165492	18	3.4	18	71	13	61	28	5	15	51	1.63
9165431--9165524	35	2.7	34	87	8	111	30	5	12	51	1.62
9165489--9165547	22	2.6	22	86	2	91	38	5	3	52	1.40
9172717--9172744	14	2.0	14	100	0	56	35	21	7	35	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9179376--9179535	65	2.5	64	76	6	153	38	13	12	35	1.83
9179828--9179882	12	4.6	12	97	0	101	49	14	0	36	1.44
9180177--9180223	24	1.9	25	86	4	69	57	14	0	27	1.38
9183810--9184917	296	3.8	295	79	7	1176	36	12	13	37	1.83
9188888--9188936	3	16.3	3	95	0	80	28	0	4	67	1.09
9188976--9189012	18	2.1	18	89	0	56	75	0	5	18	0.99
9190740--9190773	12	2.8	12	90	0	59	14	0	8	76	1.01
9197616--9197675	18	3.3	18	68	9	59	15	11	11	61	1.56
9197516--9198637	36	31.4	35	70	13	324	17	15	13	53	1.73
9197880--9198191	108	2.9	109	80	6	366	16	14	14	54	1.71
9197844--9198531	107	6.4	106	74	8	387	16	15	14	53	1.73
9198241--9198609	107	3.4	107	80	5	311	17	17	13	51	1.76
9198339--9198604	71	3.7	70	76	10	227	16	16	14	51	1.76
9198893--9198936	16	2.7	16	86	13	63	81	11	0	6	0.86
9198893--9198936	17	2.6	17	89	10	65	81	11	0	6	0.86
9198899--9198965	9	7.7	9	70	12	50	82	10	0	7	0.85
9198923--9198965	19	2.3	19	92	8	70	81	11	0	6	0.87
9200787--9200838	26	2.0	26	92	0	86	36	25	13	25	1.92
9201505--9201541	17	2.2	18	80	14	51	2	16	0	81	0.81
9203836--9203878	23	1.9	22	85	4	59	44	13	6	34	1.72
9205999--9206038	15	2.7	15	84	0	53	65	0	7	27	1.20
9210501--9210550	25	2.0	25	88	0	73	52	6	12	30	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9210586--9210613	10	2.8	10	100	0	56	35	0	10	53	1.36
9212694--9212749	26	2.1	27	83	6	71	10	19	0	69	1.17
9213738--9213787	20	2.5	21	81	15	54	34	16	10	40	1.81
9214052--9214100	24	2.0	24	85	14	66	4	38	2	55	1.31
9214624--9214680	29	2.0	29	92	0	96	36	7	10	45	1.66
9219436--9219505	35	2.0	35	85	0	95	37	17	10	35	1.83
9223744--9223894	79	1.9	79	93	2	259	19	25	32	21	1.97
9223911--9224092	80	2.3	79	94	0	310	18	26	32	21	1.97
9223749--9224208	197	2.3	196	92	2	737	18	25	33	22	1.97
9223986--9224325	116	2.9	117	89	3	549	19	23	33	23	1.97
9230277--9230336	20	3.0	20	82	7	59	33	11	13	41	1.80
9230298--9230337	21	2.0	20	90	5	62	30	12	12	45	1.79
9233040--9233079	18	2.1	20	86	9	57	30	0	12	57	1.36
9233296--9233332	19	1.9	19	94	0	65	83	2	0	13	0.74
9234248--9234287	3	14.0	3	87	10	57	62	0	2	35	1.09
9234248--9234287	20	2.0	20	95	0	71	62	0	2	35	1.09
9234584--9234941	120	3.0	119	78	2	376	43	13	23	19	1.87
9235111--9235169	16	3.7	16	100	0	118	57	11	18	11	1.64
9235245--9235455	69	3.1	69	95	0	368	39	15	19	25	1.91
9235394--9235526	52	2.6	52	81	2	151	32	14	19	33	1.92
9236922--9236953	12	2.8	12	95	4	57	0	6	6	87	0.67
9236943--9237035	43	2.2	42	84	1	114	16	16	13	53	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9239915--9240014	51	2.0	50	94	2	173	66	3	11	20	1.36
9240702--9240742	18	2.2	20	86	8	59	29	0	12	58	1.34
9240791--9240847	27	2.2	26	83	3	69	28	3	8	59	1.44
9240801--9240864	26	2.4	27	84	2	76	31	1	6	60	1.30
9240917--9240984	13	5.1	13	68	18	50	75	5	4	14	1.16
9240920--9240987	25	2.9	22	72	21	66	73	5	5	14	1.21
9240942--9240992	19	2.6	19	81	9	59	78	3	3	13	1.03
9240957--9240997	19	2.2	19	86	8	57	80	2	7	9	0.99
9240902--9240997	24	4.0	23	73	15	70	73	6	5	14	1.20
9241335--9241391	19	2.9	20	82	10	64	49	14	0	36	1.43
9241863--9241938	3	26.0	3	88	10	113	64	0	2	32	1.07
9247720--9247759	19	2.1	19	95	0	71	35	7	10	47	1.65
9248094--9248181	22	3.7	22	71	19	77	31	10	4	53	1.55
9248081--9248182	51	2.0	51	96	0	186	31	9	5	52	1.58
9248590--9249086	249	2.0	248	94	1	879	37	12	16	33	1.87
9249356--9249398	19	2.3	19	91	0	68	51	11	2	34	1.51
9251972--9252085	59	1.9	59	96	0	210	31	11	20	36	1.88
9258429--9258671	135	1.8	133	82	5	310	31	12	15	39	1.85
9258600--9258665	33	2.0	33	81	0	78	30	18	12	39	1.87
9258611--9258685	33	2.3	33	83	4	89	28	17	14	40	1.89
9259323--9259375	21	2.6	21	81	3	63	22	26	7	43	1.80
9268041--9268211	79	2.2	79	88	1	243	22	7	26	43	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9268134--9268170	18	2.1	18	89	0	56	21	0	24	54	1.45
9268193--9268236	12	3.6	12	78	6	52	20	9	29	40	1.83
9268041--9268240	79	2.5	78	82	5	190	22	7	27	43	1.78
9272778--9273338	302	1.9	303	85	1	777	37	15	13	33	1.86
9274678--9274729	27	1.9	27	92	0	86	42	5	0	51	1.25
9281499--9281708	20	10.5	19	71	16	106	46	33	0	20	1.54
9281517--9281690	12	13.8	12	67	18	59	45	35	0	19	1.51
9281655--9281697	15	3.1	14	84	12	54	39	41	0	18	1.51
9281506--9281713	99	2.1	98	80	10	235	46	32	0	20	1.51
9281766--9281852	23	3.8	23	74	8	97	47	43	3	5	1.44
9281755--9281885	45	2.9	45	88	2	165	48	40	2	9	1.48
9281780--9281913	45	3.0	45	82	2	126	48	35	2	12	1.57
9282023--9282057	17	2.1	17	88	0	52	42	34	5	17	1.73
9283205--9283259	21	2.6	21	83	11	69	49	0	0	50	1.00
9283236--9283296	31	2.0	31	96	0	113	50	3	1	44	1.28
9284488--9284526	21	1.9	20	89	5	60	20	0	5	74	1.01
9290097--9290245	76	2.0	76	90	2	237	29	6	15	48	1.70
9291619--9291655	18	2.1	18	89	0	56	16	2	16	64	1.40
9299895--9299939	21	2.1	21	83	0	54	51	13	4	31	1.61
9300532--9300570	20	1.9	20	84	5	51	61	25	0	12	1.31
9303792--9303829	13	2.9	13	88	7	51	81	0	15	2	0.80
9304260--9304289	13	2.3	13	100	0	60	40	0	20	40	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9305107--9305145	20	2.0	20	90	10	62	53	0	0	46	1.00
9306456--9306508	27	2.0	27	96	0	97	18	7	24	49	1.74
9310770--9310816	19	2.5	17	81	18	58	53	0	2	44	1.12
9310811--9310959	73	2.0	77	84	11	202	35	11	6	46	1.64
9313779--9313832	28	2.0	27	82	10	65	40	5	9	44	1.60
9315508--9315552	20	2.3	19	76	3	54	44	0	0	55	0.99
9315975--9316024	25	2.0	26	84	4	66	26	6	6	62	1.42
9324940--9324988	22	2.2	23	92	3	82	24	4	6	65	1.33
9325430--9325518	46	1.9	46	88	4	135	51	7	14	25	1.69
9331309--9331432	66	1.9	66	84	0	167	49	8	12	29	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120