genome.fa.s146.2.7.7.80.10.50.1000.49.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  49  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5616973--5629508	898	13.9	880	79	9	10683	25	24	24	25	2.00
5622138--5622190	26	2.0	26	85	0	70	26	18	24	30	1.98
5623040--5623092	26	2.0	26	85	0	70	26	18	24	30	1.98
5616960--5629608	902	14.0	902	81	7	13004	25	24	24	25	2.00
5624837--5624889	26	2.0	26	92	0	88	28	20	22	28	1.99
5625883--5625935	26	2.0	26	96	0	97	30	20	20	28	1.98
5626779--5626831	26	2.0	26	88	0	79	24	22	28	24	2.00
5627677--5627729	26	2.0	26	100	0	106	26	20	26	26	1.99
5628574--5628629	26	2.2	26	93	0	94	26	19	23	30	1.98
5629482--5629537	26	2.2	26	96	0	103	26	17	25	30	1.97
5628757--5631619	715	3.9	715	81	6	2954	25	23	23	27	2.00
5634359--5634411	26	2.0	26	92	0	88	28	18	24	28	1.98
5635254--5635306	26	2.0	26	88	0	79	28	18	26	26	1.98
5631112--5645582	898	16.3	899	85	4	18247	25	23	24	26	2.00
5639668--5639720	26	2.0	26	92	0	88	28	18	26	26	1.98
5640570--5640622	26	2.0	26	89	7	81	28	18	26	26	1.98
5637915--5645560	892	8.6	894	86	3	9807	25	23	25	25	2.00
5641468--5641520	26	2.0	26	96	0	97	26	18	26	28	1.98
5643164--5643188	11	2.3	11	100	0	50	20	32	28	20	1.97
5646013--5647954	703	2.7	700	78	11	1942	26	21	23	28	1.99
5648091--5648142	25	2.0	25	88	3	77	26	19	25	28	1.98
5649889--5649941	26	2.0	26	92	0	88	26	20	24	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5650777--5650829	26	2.0	26	92	0	88	28	18	24	28	1.98
5647357--5652787	898	6.1	899	84	5	6779	25	24	24	25	2.00
5651675--5651727	26	2.0	26	92	0	88	24	22	26	26	2.00
5652567--5652619	26	2.0	26	100	0	106	26	20	26	26	1.99
5652593--5652945	158	2.2	158	84	2	449	23	29	26	21	1.99
5653625--5653677	26	2.0	26	100	0	106	26	20	26	26	1.99
5653651--5654015	158	2.3	158	87	1	489	23	30	26	19	1.98
5654688--5654740	26	2.0	26	92	7	90	26	16	28	28	1.97
5655575--5655627	26	2.0	26	96	0	97	28	20	24	26	1.99
5653810--5657571	901	4.2	899	84	6	4845	25	24	24	25	2.00
5657337--5657389	26	2.0	26	96	0	97	26	18	26	28	1.98
5657363--5657727	158	2.3	158	87	1	507	23	30	27	19	1.98
5659919--5659971	26	2.0	26	92	0	88	28	20	22	28	1.99
5659609--5664389	878	5.4	894	84	5	6120	25	24	24	25	2.00
5663476--5663528	26	2.0	26	92	0	88	32	18	20	28	1.97
5664341--5664718	159	2.4	159	85	1	499	21	29	28	20	1.98
5664529--5667044	902	2.8	899	87	1	3530	25	23	24	26	2.00
5666290--5666342	26	2.0	26	85	0	70	24	18	26	30	1.98
5667812--5667864	26	2.0	26	92	0	88	28	16	26	28	1.97
5668724--5668776	26	2.0	26	96	0	97	28	20	24	26	1.99
5669623--5669672	26	1.9	26	95	0	91	30	20	26	24	1.98
5670521--5670573	26	2.0	26	96	0	97	26	18	26	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5671416--5671466	26	2.0	26	88	0	75	29	17	23	29	1.97
5672313--5672362	26	1.9	26	95	0	91	30	20	26	24	1.98
5667282--5677040	904	10.9	900	87	2	13607	25	24	25	25	2.00
5673215--5673267	26	2.0	26	96	0	97	26	18	26	28	1.98
5674109--5674160	26	2.0	26	84	0	68	30	17	23	28	1.97
5675017--5675066	25	2.0	25	92	0	82	30	18	26	26	1.98
5675917--5675969	26	2.0	26	88	0	79	32	15	22	30	1.94
5677130--5677182	26	2.0	26	92	0	88	26	16	26	30	1.97
5678030--5678082	26	2.0	26	92	0	88	26	16	26	30	1.97
5682165--5682217	26	2.0	26	96	0	97	26	18	26	28	1.98
5683068--5683120	26	2.0	26	92	0	88	26	20	24	28	1.99
5681298--5698964	903	19.8	903	85	3	22445	25	23	24	26	2.00
5683973--5684028	26	2.2	26	96	0	103	26	17	25	30	1.97
5685752--5685804	26	2.0	26	92	0	88	26	18	24	30	1.98
5686617--5686669	26	2.0	26	92	0	88	26	16	26	30	1.97
5687518--5687570	26	2.0	26	92	0	88	28	18	24	28	1.98
5688407--5688459	26	2.0	26	96	0	97	24	20	28	26	1.99
5691067--5691119	26	2.0	26	96	0	97	28	20	24	26	1.99
5681298--5698964	904	19.8	902	85	3	22089	25	23	24	26	2.00
5692867--5692919	26	2.0	26	96	0	97	28	20	24	26	1.99
5693761--5693812	26	2.0	26	96	0	95	28	19	26	25	1.98
5694664--5694716	26	2.0	26	88	0	79	28	16	24	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5695556--5695608	26	2.0	26	96	0	97	26	18	26	28	1.98
5696458--5696510	26	2.0	26	88	0	79	28	16	24	30	1.97
5698263--5698315	26	2.0	26	92	0	88	26	16	26	30	1.97
5698304--5699626	668	2.0	658	89	2	1995	26	21	24	28	1.99
5701588--5701640	26	2.0	26	96	0	97	24	20	28	26	1.99
5703369--5703421	26	2.0	26	96	0	97	24	20	28	26	1.99
5704271--5704323	26	2.0	26	89	7	81	28	16	24	30	1.97
5700711--5709462	903	9.9	903	81	7	9443	25	24	24	25	2.00
5706056--5706108	26	2.0	26	96	0	97	28	20	24	26	1.99
5706884--5706936	26	2.0	26	85	0	70	32	15	22	30	1.94
5706567--5709462	909	3.3	869	84	6	3535	25	24	24	25	2.00
5708658--5708710	26	2.0	26	88	0	79	24	18	26	30	1.98
5709868--5709920	26	2.0	26	96	0	97	28	20	24	26	1.99
5710771--5710823	26	2.0	26	96	0	97	26	18	22	32	1.97
5711667--5711719	26	2.0	26	92	0	88	26	16	26	30	1.97
5709470--5716424	903	7.8	902	85	4	8629	25	24	24	25	2.00
5714308--5714360	26	2.0	26	96	0	97	26	18	26	28	1.98
5716920--5716998	26	3.0	26	98	0	149	26	18	27	26	1.98
5718158--5721210	895	3.4	898	88	2	4355	25	24	24	25	2.00
5720287--5720339	26	2.0	26	96	0	97	26	18	26	28	1.98
5721232--5721262	4	7.8	4	92	0	53	0	29	70	0	0.87
5721383--5723721	899	2.6	893	88	2	3355	25	24	24	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5722957--5725158	716	3.1	715	90	2	3310	25	22	25	26	2.00
5725132--5725184	26	2.0	26	92	7	90	26	20	26	26	1.99
5726770--5726822	26	2.0	26	85	0	70	30	24	22	22	1.99
5728547--5728599	26	2.0	26	96	0	97	28	20	24	26	1.99
5729441--5729490	26	1.9	26	91	0	82	30	20	24	26	1.98
5730343--5730393	26	2.0	26	96	0	93	29	21	21	27	1.99
5730576--5730605	12	2.5	12	100	0	60	6	26	66	0	1.16
5731252--5731303	26	2.0	26	100	0	104	26	19	26	26	1.99
5731484--5731517	4	8.5	4	93	0	59	2	26	70	0	1.01
5732166--5732216	26	2.0	26	88	0	75	29	21	23	25	1.99
5733071--5733123	26	2.0	26	92	0	88	26	16	26	30	1.97
5725990--5761220	902	38.7	907	71	10	15617	24	23	23	25	1.98
5735857--5743662	881	8.8	877	85	5	9393	25	24	24	25	2.00
5739357--5739408	25	2.0	26	88	3	79	30	23	19	26	1.98
5741127--5741179	26	2.0	26	85	0	70	32	16	22	28	1.96
5742031--5742083	26	2.0	26	96	0	97	26	18	26	28	1.98
5740259--5743662	904	3.8	899	88	2	4713	25	23	24	25	2.00
5743178--5744156	490	2.0	488	91	1	1586	27	18	21	31	1.97
5744310--5744362	26	2.0	26	96	0	97	28	18	26	26	1.98
5744571--5745544	489	2.0	488	88	1	1470	28	18	21	32	1.97
5745702--5745754	26	2.0	26	92	0	88	28	16	26	28	1.97
5746503--5746533	11	2.8	11	95	0	53	9	35	35	19	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5746616--5746668	26	2.0	26	100	0	106	26	20	26	26	1.99
5745066--5748410	905	3.7	888	86	3	4492	25	23	24	26	2.00
5747512--5747564	26	2.0	26	96	0	97	26	18	26	28	1.98
5751472--5751524	26	2.0	26	96	0	97	26	22	24	26	2.00
5753256--5753308	26	2.0	26	96	0	97	26	20	24	28	1.99
5754158--5754210	26	2.0	26	92	0	88	26	22	24	26	2.00
5755051--5755129	26	3.0	26	96	0	149	26	18	26	27	1.98
5755977--5756029	26	2.0	26	92	0	88	28	18	24	28	1.98
5757779--5757832	26	2.1	26	85	0	72	27	22	24	25	2.00
5758682--5758734	26	2.0	26	88	0	79	30	15	22	32	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120