genome.fa.s146.2.7.7.80.10.50.1000.33.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  33  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3628254--3629009	320	2.4	317	83	4	899	24	26	28	21	1.99
3629058--3629110	26	2.0	26	88	0	79	24	20	26	28	1.99
3630211--3630263	26	2.0	26	96	0	97	24	20	28	26	1.99
3631212--3631356	45	3.2	45	81	3	184	19	31	32	16	1.94
3631797--3631849	26	2.0	26	92	0	88	28	16	26	28	1.97
3632152--3632204	26	2.0	26	92	0	88	24	20	26	28	1.99
3633134--3633220	45	1.9	45	80	0	102	22	32	27	17	1.96
3633879--3634165	158	1.8	158	81	6	357	24	29	27	19	1.98
3634178--3634230	26	2.0	26	96	0	97	26	18	26	28	1.98
3633524--3634445	479	1.9	477	83	2	1170	23	27	28	21	1.99
3634534--3634586	26	2.0	26	96	0	97	24	20	28	26	1.99
3641372--3641486	45	2.6	45	81	5	133	23	32	26	18	1.97
3641927--3641979	26	2.0	26	88	0	79	28	18	24	28	1.98
3642269--3642321	26	2.0	26	92	0	88	24	18	28	28	1.98
3644503--3644555	26	2.0	26	96	0	97	28	20	24	26	1.99
3646291--3646342	26	2.0	26	85	7	70	28	15	26	28	1.96
3647229--3647418	90	2.1	90	87	3	267	19	35	26	18	1.95
3647261--3647436	90	2.0	90	90	0	280	19	35	25	19	1.95
3647261--3647511	90	2.8	89	82	3	245	21	33	25	19	1.97
3647221--3647554	45	7.4	45	69	6	183	20	33	26	19	1.96
3647995--3648047	26	2.0	26	89	7	81	24	16	28	30	1.97
3647859--3648305	161	2.8	162	84	2	560	23	26	29	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3648325--3648596	134	2.0	136	83	3	345	21	27	29	20	1.98
3648577--3648629	26	2.0	26	96	0	97	28	22	22	26	1.99
3648602--3648946	159	2.2	158	80	5	392	22	28	28	19	1.98
3648920--3648970	26	2.0	26	92	7	86	27	19	25	27	1.99
3650226--3650278	26	2.0	26	100	0	106	26	20	26	26	1.99
3651547--3651780	45	5.2	45	85	1	272	15	29	33	20	1.94
3651523--3651775	135	1.9	135	82	3	321	15	30	33	21	1.94
3652420--3652785	197	1.9	196	82	6	465	24	28	25	22	1.99
3653530--3653741	45	4.7	44	76	4	163	19	32	27	19	1.97
3654169--3654221	26	2.0	26	88	0	79	30	18	24	26	1.98
3654524--3654575	26	2.0	25	88	3	77	26	19	25	28	1.98
3654366--3654727	194	1.9	195	84	4	498	23	30	25	20	1.99
3655517--3655708	90	2.1	90	81	5	219	17	30	31	20	1.96
3655517--3655708	45	4.3	45	75	7	151	17	30	31	20	1.96
3656159--3656211	26	2.0	26	92	0	88	24	18	28	28	1.98
3656186--3656473	159	1.8	159	83	1	380	24	29	26	19	1.99
3656515--3656567	26	2.0	26	85	0	70	24	18	26	30	1.98
3657502--3657628	45	2.8	44	81	2	146	18	33	30	16	1.94
3658119--3658169	26	2.0	26	96	0	93	25	19	27	27	1.99
3658462--3658514	26	2.0	26	89	7	81	28	20	20	30	1.98
3659397--3659604	45	4.6	44	77	7	152	19	33	28	18	1.96
3659407--3659604	90	2.2	90	81	3	220	19	33	28	18	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3660058--3660110	26	2.0	26	88	0	79	24	18	26	30	1.98
3661390--3661499	45	2.4	45	86	0	139	21	35	27	15	1.94
3661997--3662049	26	2.0	26	85	0	70	28	20	26	24	1.99
3662339--3662389	26	2.0	26	92	0	84	25	21	25	27	1.99
3663735--3663834	45	2.2	45	80	3	103	19	32	31	18	1.95
3663766--3663894	45	2.9	45	80	0	150	17	29	33	19	1.95
3664384--3664677	158	1.9	158	83	2	385	24	30	26	18	1.98
3664713--3664765	26	2.0	26	92	0	88	26	16	26	30	1.97
3664867--3665024	45	3.5	45	83	0	181	20	32	27	18	1.97
3665482--3665531	26	1.9	26	91	0	82	30	18	26	26	1.98
3665675--3665726	25	2.0	25	82	10	61	28	17	25	28	1.97
3666060--3666112	26	2.0	26	85	0	70	26	15	28	30	1.96
3667293--3667509	45	4.8	45	75	1	184	16	32	30	20	1.95
3668279--3668331	26	2.0	26	96	0	97	24	20	28	26	1.99
3669257--3669415	89	1.8	85	81	10	196	22	33	25	18	1.97
3670117--3670159	12	3.6	12	87	0	59	4	39	27	27	1.76
3672232--3672287	23	2.4	23	90	0	85	26	14	33	25	1.94
3675064--3675223	45	3.6	45	80	0	185	18	33	28	19	1.95
3675664--3675716	26	2.0	26	85	7	72	30	20	20	28	1.98
3675689--3675983	159	1.9	158	82	3	369	22	29	29	18	1.97
3676019--3676070	26	2.0	26	88	3	79	25	15	28	30	1.96
3675861--3676226	196	1.9	196	86	3	531	19	27	29	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3677013--3677175	45	3.6	45	78	0	164	15	30	32	21	1.94
3677001--3677175	90	1.9	90	80	0	197	16	30	32	21	1.95
3677796--3678166	170	2.2	170	81	3	417	22	29	25	22	1.99
3677899--3678228	170	1.9	170	79	6	364	20	30	26	22	1.98
3678899--3679095	45	4.4	45	80	5	213	18	34	29	17	1.94
3679539--3679589	26	2.0	26	96	0	93	29	19	25	25	1.99
3679891--3679943	26	2.0	26	92	0	88	26	20	26	26	1.99
3679736--3680101	196	1.9	195	81	1	446	22	29	25	22	1.99
3680827--3681029	45	4.5	45	73	7	160	20	33	26	19	1.96
3681664--3681716	26	2.0	26	85	7	72	30	22	22	24	1.99
3682658--3682860	45	4.5	46	76	6	200	17	33	30	19	1.94
3682645--3682860	90	2.4	89	83	4	263	17	32	30	19	1.95
3683166--3683559	136	2.9	136	86	2	540	24	29	27	18	1.98
3684779--3684962	45	4.1	44	78	4	197	16	32	32	19	1.94
3684781--3684959	90	2.0	90	85	0	241	15	31	32	19	1.93
3685722--3685774	26	2.0	26	85	7	72	26	20	26	26	1.99
3685575--3685929	196	1.8	195	82	3	453	22	29	27	21	1.99
3687392--3687757	196	1.9	196	81	6	456	23	29	26	20	1.99
3694457--3694600	45	3.2	45	78	2	164	15	30	31	21	1.95
3694457--3694654	90	2.2	90	82	1	227	17	29	30	21	1.96
3695102--3695154	26	2.0	26	92	0	88	24	22	24	28	2.00
3698575--3698627	26	2.0	26	92	0	88	28	18	24	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3699856--3699880	13	1.9	13	100	0	50	24	16	36	24	1.94
3699916--3700074	45	3.5	45	75	8	153	16	32	32	18	1.93
3700522--3700574	26	2.0	26	92	0	88	28	22	22	26	1.99
3700888--3700947	26	2.3	26	82	5	68	28	15	23	33	1.94
3701482--3701550	33	2.1	33	97	0	129	40	18	17	23	1.91
3707125--3707329	45	4.6	45	75	9	161	20	31	27	20	1.97
3707125--3707326	90	2.2	90	81	6	223	20	31	27	20	1.97
3708096--3708148	26	2.0	26	85	7	72	28	20	24	26	1.99
3709093--3709213	45	2.7	45	73	7	111	22	28	29	19	1.98
3709694--3709746	26	2.0	26	96	0	97	26	18	26	28	1.98
3710027--3710078	26	2.0	26	84	0	68	30	15	23	30	1.95
3709541--3710581	332	3.1	330	79	4	1092	24	27	26	21	1.99
3710643--3710833	90	2.1	91	80	4	219	19	30	28	21	1.97
3710670--3710846	45	4.0	44	73	6	131	18	30	29	21	1.97
3710671--3710875	90	2.3	90	80	2	225	19	31	27	21	1.97
3712789--3712841	26	2.0	26	88	0	79	30	18	22	28	1.98
3713288--3713339	24	2.2	24	92	0	86	5	34	30	28	1.81
3714165--3714319	45	3.4	45	73	7	152	16	31	29	21	1.96
3714149--3714317	90	1.9	90	83	4	225	16	29	30	23	1.96
3716697--3716749	26	2.0	26	92	0	88	30	20	22	26	1.98
3717040--3717092	26	2.0	26	85	0	70	24	20	26	28	1.99
3718630--3718682	26	2.0	26	88	0	79	26	20	22	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3719995--3720118	45	2.8	44	75	6	115	18	30	29	20	1.97
3720418--3720771	161	2.2	162	84	1	460	26	26	25	21	1.99
3720717--3720768	26	2.0	26	96	0	95	26	19	25	28	1.98
3720895--3720946	26	2.0	26	92	0	86	26	19	26	26	1.99
3721900--3721999	45	2.2	45	85	1	130	21	32	29	18	1.96
3722138--3722190	26	2.0	26	88	0	79	28	16	24	30	1.97
3722650--3722702	26	2.0	26	92	7	90	28	20	24	26	1.99
3722824--3722876	26	2.0	26	92	7	90	28	16	24	30	1.97
3722606--3722933	174	1.9	174	87	0	485	24	28	25	22	1.99
3723018--3723070	26	2.0	26	92	0	88	24	20	26	28	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120