genome.fa.s146.2.7.7.80.10.50.1000.81.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  81  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10420462--10420495	17	2.0	17	88	0	50	20	2	5	70	1.21
10426056--10426082	1	27.0	1	100	0	54	0	100	0	0	0.00
10426480--10426507	2	14.0	2	100	0	56	50	0	0	50	1.00
10428402--10428438	2	18.5	2	100	0	74	48	0	0	51	1.00
10430162--10430341	84	2.1	83	83	5	227	43	6	3	47	1.44
10430360--10430401	21	2.0	22	95	4	77	33	11	9	45	1.73
10430359--10430411	21	2.5	20	82	14	54	35	11	9	43	1.73
10430395--10430447	21	2.5	22	72	9	56	33	3	11	50	1.56
10430779--10431054	22	12.5	22	71	5	137	40	9	7	42	1.66
10431051--10431107	22	2.6	22	88	0	78	45	15	0	38	1.47
10431065--10431136	22	3.3	22	86	0	90	41	12	4	41	1.62
10431514--10431806	22	13.2	22	71	10	100	36	8	7	46	1.64
10432330--10432354	13	1.9	13	100	0	50	84	0	16	0	0.63
10432848--10433042	22	8.9	22	75	5	117	38	6	8	46	1.61
10432854--10433042	44	4.3	44	72	12	140	38	6	8	46	1.61
10432883--10433041	87	1.8	87	80	8	189	37	6	9	47	1.61
10433148--10433440	22	13.5	22	70	9	154	35	9	6	49	1.60
10433265--10433437	86	2.0	86	81	6	199	36	9	6	46	1.64
10433276--10433424	64	2.3	64	83	3	174	36	9	7	46	1.64
10433498--10433539	19	2.3	18	84	12	50	33	2	9	54	1.46
10433624--10433822	22	9.2	22	68	15	76	36	7	5	50	1.54
10434215--10434266	26	2.0	27	81	11	63	46	0	9	44	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10435965--10436008	17	2.6	16	89	10	70	45	0	2	52	1.13
10437242--10437273	16	2.0	16	93	0	55	65	6	0	28	1.16
10439179--10439214	19	2.0	19	89	10	58	63	0	2	33	1.08
10439200--10439280	21	3.8	21	77	6	65	53	1	4	40	1.31
10439201--10439262	22	2.9	21	81	13	65	54	1	4	38	1.31
10439221--10439286	21	3.1	22	78	8	75	53	3	6	37	1.41
10439980--10440041	27	2.3	26	86	10	81	61	3	0	35	1.12
10440028--10440068	8	4.7	9	80	17	50	56	0	2	41	1.13
10440194--10440242	20	2.3	21	79	10	55	63	2	0	34	1.06
10440455--10440490	2	18.0	2	100	0	72	50	0	0	50	1.00
10441744--10441796	16	3.5	15	79	10	54	52	0	1	45	1.11
10441947--10442014	21	3.1	22	75	12	61	51	4	0	44	1.21
10441954--10442042	44	2.0	46	82	8	112	52	3	1	42	1.25
10442093--10442130	18	2.1	19	90	5	60	47	0	0	52	1.00
10442805--10442920	60	1.9	61	83	1	153	38	6	12	42	1.68
10444774--10444816	21	2.0	21	90	0	68	30	25	34	9	1.87
10447460--10447487	2	14.0	2	100	0	56	50	0	0	50	1.00
10451125--10451304	84	2.1	83	84	5	236	43	5	3	47	1.43
10451323--10451364	21	2.0	22	95	4	77	33	11	9	45	1.73
10451322--10451374	21	2.5	20	82	14	54	35	11	9	43	1.73
10451358--10451410	21	2.5	22	72	9	56	33	3	11	50	1.56
10451742--10452017	22	12.5	22	72	5	146	40	9	7	43	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10452014--10452070	22	2.6	22	88	0	78	45	15	0	38	1.47
10452028--10452099	22	3.3	22	86	0	90	41	12	2	43	1.57
10452477--10452525	22	2.3	23	82	13	68	40	8	2	48	1.44
10452486--10452646	22	7.3	20	76	14	81	36	8	7	47	1.61
10452594--10452655	22	2.8	22	92	4	99	32	9	14	43	1.78
10452584--10452664	22	3.8	20	81	16	76	32	9	12	45	1.75
10452662--10452740	22	3.6	22	77	1	79	40	7	3	48	1.50
10452668--10452769	44	2.3	44	81	3	107	39	8	6	45	1.62
10453804--10453901	22	4.5	22	78	5	81	38	8	8	44	1.64
10454113--10454164	23	2.3	22	83	9	61	36	5	3	53	1.43
10454125--10454181	22	2.5	23	80	13	64	33	7	5	54	1.50
10454276--10454328	21	2.5	21	81	9	63	39	11	7	41	1.69
10454665--10454755	22	4.3	21	78	10	78	37	9	6	46	1.63
10455180--10455230	27	2.0	27	85	11	72	47	0	7	45	1.32
10456930--10456973	17	2.6	16	86	10	61	45	2	2	50	1.27
10458051--10458112	24	2.6	24	80	16	67	27	4	3	64	1.29
10458155--10458180	3	8.7	3	100	0	52	30	0	0	69	0.89
10458748--10458791	20	2.2	20	95	0	79	38	31	25	4	1.76
10458746--10458863	62	1.9	63	82	5	150	32	29	21	16	1.95
10458809--10458853	20	2.2	20	84	0	54	33	28	22	15	1.95
10459097--10459138	14	3.1	15	80	19	56	7	42	21	28	1.79
10459097--10459133	13	2.7	14	80	20	51	8	43	24	24	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10459244--10459686	157	2.8	158	92	3	727	29	14	17	38	1.90
10460079--10460103	1	25.0	1	100	0	50	0	0	0	100	0.00
10461435--10461576	38	3.5	42	87	8	195	22	17	26	33	1.96
10461583--10461703	1	121.0	1	76	0	98	86	7	0	5	0.69
10461583--10461689	19	5.7	18	81	10	126	87	7	0	4	0.65
10461585--10461703	32	3.8	30	77	13	125	86	7	0	5	0.70
10461586--10461697	38	2.9	38	85	6	154	86	8	0	5	0.70
10461873--10462000	9	14.8	8	70	21	57	30	0	4	64	1.20
10461887--10461998	3	36.3	3	71	24	67	32	0	4	63	1.14
10461888--10461990	25	4.0	27	73	17	85	33	0	4	62	1.17
10462570--10462613	20	2.2	20	95	0	79	38	31	25	4	1.76
10462568--10462685	62	1.9	63	82	5	150	32	29	21	16	1.95
10462631--10462675	20	2.2	20	84	0	54	33	28	22	15	1.95
10462922--10462963	14	3.1	15	80	19	56	7	42	21	28	1.79
10462922--10462958	13	2.7	14	80	20	51	8	43	24	24	1.81
10463075--10463518	158	2.8	157	95	1	784	29	14	17	38	1.89
10463075--10463536	156	2.9	157	94	1	784	29	14	17	38	1.90
10464067--10464097	15	2.1	15	93	0	53	64	6	0	29	1.18
10469119--10469143	7	3.6	7	100	0	50	0	16	12	72	1.13
10469171--10469215	2	23.0	2	90	4	74	51	0	0	48	1.00
10471409--10471448	21	1.9	21	84	0	53	50	12	2	35	1.54
10472293--10472325	16	2.0	16	94	5	57	78	0	3	18	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10472677--10472751	30	2.5	30	84	6	89	60	17	2	20	1.48
10473251--10473352	3	34.3	3	86	2	143	60	3	1	33	1.26
10473417--10473476	26	2.3	26	80	5	68	25	21	25	28	1.99
10473460--10473525	25	2.6	26	73	4	62	30	27	24	18	1.98
10473740--10474098	114	3.2	114	79	4	271	36	14	23	25	1.93
10473805--10474106	113	2.7	114	79	5	326	36	13	23	26	1.92
10475864--10475889	11	2.4	11	100	0	52	92	0	7	0	0.39
10476032--10476244	44	4.8	43	73	10	137	41	15	11	30	1.84
10476173--10476298	50	2.6	49	88	2	182	42	20	8	27	1.81
10484774--10484825	24	2.3	22	90	6	77	0	3	9	86	0.69
10484774--10484823	17	2.9	17	88	5	66	0	4	10	86	0.71
10487070--10487129	7	8.0	7	77	14	57	81	0	16	1	0.77
10487075--10487130	11	4.9	11	77	14	60	83	0	14	1	0.72
10487071--10487128	17	3.6	16	84	15	75	82	0	15	1	0.74
10487079--10487132	28	2.0	27	92	3	90	83	0	12	3	0.78
10492119--10492166	21	2.2	22	88	7	80	45	14	0	39	1.45
10492125--10492175	21	2.5	20	87	6	68	45	13	0	41	1.44
10494528--10494590	29	2.2	29	80	5	74	36	3	9	50	1.51
10505143--10505172	9	3.4	9	90	9	53	76	0	0	23	0.78
10507320--10507406	43	2.0	43	84	0	111	31	1	29	37	1.65
10508674--10508713	20	1.9	21	90	10	64	20	2	5	72	1.15
10510212--10510251	18	2.2	19	86	4	55	40	2	5	52	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10513318--10513366	18	2.8	18	78	15	57	46	6	0	46	1.27
10513979--10514041	27	2.4	27	83	2	74	50	3	11	34	1.54
10514364--10514406	19	2.3	19	88	8	61	58	0	0	41	0.98
10515258--10515342	19	4.2	20	80	16	88	77	1	0	21	0.83
10515258--10515345	11	8.2	11	72	21	71	77	1	0	21	0.84
10521913--10521942	15	2.0	15	100	0	60	26	33	0	40	1.57
10522157--10522206	25	2.0	25	100	0	100	16	12	8	64	1.49
10522345--10522382	3	12.7	3	100	0	76	68	31	0	0	0.90
10522670--10522719	26	1.9	26	87	0	73	52	20	6	22	1.68
10522690--10522796	38	2.8	38	80	8	117	48	19	5	26	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120