genome.fa.s146.2.7.7.80.10.50.1000.54.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  54  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6196862--6196914	26	2.0	26	100	0	106	26	26	20	26	1.99
6195802--6198885	905	3.4	893	85	3	3948	25	25	24	24	2.00
6200775--6200822	24	2.0	25	87	4	71	25	25	18	31	1.98
6198907--6203321	900	4.9	902	86	4	5906	25	24	23	25	2.00
6201674--6201726	26	2.0	26	96	0	97	30	26	15	28	1.96
6202559--6202611	26	2.0	26	92	0	88	28	28	18	24	1.98
6205196--6205248	26	2.0	26	100	0	106	26	26	20	26	1.99
6206670--6206719	26	1.9	26	91	0	82	32	18	24	26	1.97
6205516--6208815	902	3.7	896	86	4	4372	24	25	25	24	2.00
6207570--6207622	26	2.0	26	96	0	97	26	18	26	28	1.98
6208448--6208500	26	2.0	26	92	0	88	28	16	26	28	1.97
6208788--6208882	48	2.0	49	97	2	183	32	14	11	41	1.82
6208849--6208881	16	2.1	16	100	0	66	42	12	6	39	1.67
6209040--6209086	3	15.7	3	82	12	53	31	0	0	68	0.90
6209685--6209730	20	2.3	20	88	0	65	43	32	13	10	1.78
6210113--6210152	17	2.4	16	84	8	53	22	5	0	72	1.04
6210139--6210186	17	2.8	17	78	9	53	12	6	2	79	1.01
6210139--6210196	14	4.2	14	76	8	57	13	6	1	77	1.05
6210162--6210201	14	2.5	17	73	23	50	15	10	0	75	1.05
6214191--6214249	30	2.0	30	83	6	75	72	0	20	6	1.06
6214223--6214264	17	2.4	18	85	14	54	80	0	19	0	0.70
6214225--6214281	13	4.0	13	79	20	53	77	0	19	3	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6214202--6214280	21	3.8	20	80	12	79	75	0	18	5	0.97
6215517--6215855	41	8.1	41	92	2	525	23	16	24	36	1.94
6215517--6215855	83	4.1	82	93	1	534	23	16	24	36	1.94
6215517--6215855	124	2.7	124	93	1	561	23	16	24	36	1.94
6215862--6215916	1	55.0	1	77	0	56	89	10	0	0	0.50
6215864--6215916	19	2.8	19	88	0	79	88	11	0	0	0.51
6216114--6216274	23	6.9	23	68	25	74	29	1	2	66	1.15
6216125--6216267	4	35.5	4	70	19	61	29	2	2	66	1.15
6216129--6216267	16	8.3	17	70	20	71	29	2	2	66	1.15
6216210--6216269	17	3.6	17	79	16	63	35	1	0	63	1.05
6216126--6216275	65	2.3	65	78	11	164	29	2	2	66	1.13
6217189--6217228	17	2.4	16	84	8	53	22	5	0	72	1.04
6217215--6217272	14	4.2	14	76	8	57	13	6	3	75	1.13
6217280--6217575	59	5.0	59	87	4	418	45	7	13	34	1.70
6217366--6217457	28	3.1	28	63	22	71	41	5	16	36	1.71
6218168--6218220	26	2.0	26	92	0	88	26	16	26	30	1.97
6221099--6221151	26	2.0	26	92	0	88	28	26	20	24	1.99
6221988--6222040	26	2.0	26	88	0	79	28	24	16	30	1.97
6222894--6222946	26	2.0	26	96	0	97	28	24	20	26	1.99
6220218--6225584	900	6.0	900	85	3	6732	25	24	23	25	2.00
6223794--6223846	26	2.0	26	92	0	88	28	26	16	28	1.97
6231117--6231169	26	2.0	26	92	0	88	30	26	16	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6232698--6232750	26	2.0	26	92	0	88	28	28	18	24	1.98
6233603--6233655	26	2.0	26	89	7	81	28	20	20	30	1.98
6232500--6237752	905	5.9	897	82	6	6094	26	24	23	25	2.00
6234500--6234552	26	2.0	26	92	0	88	28	22	20	28	1.99
6235342--6235394	26	2.0	26	96	0	97	26	24	20	28	1.99
6236250--6236301	26	2.0	26	96	0	95	26	25	19	28	1.98
6238948--6239012	31	2.1	31	100	0	130	33	16	9	40	1.81
6237914--6240100	704	3.0	708	81	8	2442	26	24	23	25	2.00
6242001--6242060	26	2.4	26	86	10	81	31	30	11	26	1.92
6242905--6242957	26	2.0	26	96	0	97	28	24	20	26	1.99
6239355--6243888	904	5.0	901	85	5	5609	25	24	24	25	2.00
6243607--6243654	12	4.0	12	77	0	51	4	64	20	10	1.41
6243609--6243655	16	2.9	16	87	0	67	4	68	19	8	1.33
6243837--6243888	26	2.0	26	88	7	79	28	23	19	28	1.98
6244566--6244617	26	2.0	26	100	0	104	26	26	19	26	1.99
6245467--6245519	26	2.0	26	88	0	79	28	26	18	26	1.98
6249894--6249946	26	2.0	26	96	0	97	28	26	18	26	1.98
6249735--6250144	185	2.2	185	90	0	631	21	28	28	21	1.99
6251824--6251876	26	2.0	26	92	0	88	28	26	16	28	1.97
6254469--6254520	25	2.0	26	88	3	79	28	25	19	26	1.98
6256248--6256300	26	2.0	26	96	0	97	28	22	18	30	1.98
6255655--6257315	828	2.0	823	87	3	2361	25	23	25	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6257436--6257486	26	2.0	26	88	7	77	25	27	15	31	1.96
6256997--6257702	367	1.9	367	85	2	961	16	26	29	26	1.97
6258327--6258379	26	2.0	26	96	0	97	24	26	22	26	2.00
6258877--6258929	26	2.0	26	100	0	106	26	26	20	26	1.99
6260664--6260716	26	2.0	26	100	0	106	26	26	20	26	1.99
6261570--6261622	26	2.0	26	96	0	97	28	26	18	26	1.98
6262454--6262506	26	2.0	26	92	0	88	28	24	18	28	1.98
6258700--6265266	885	7.4	885	84	6	7652	25	25	24	25	2.00
6264218--6264270	26	2.0	26	100	0	106	26	26	20	26	1.99
6266507--6266733	59	3.8	60	79	12	213	34	13	7	44	1.73
6266751--6266808	14	4.2	14	76	8	57	77	1	6	13	1.05
6266758--6266808	17	2.9	17	76	21	52	78	1	5	13	1.02
6266795--6266834	17	2.4	16	84	8	53	72	0	5	22	1.04
6266843--6266884	4	10.8	4	82	5	50	78	4	0	16	0.91
6267838--6267976	21	6.4	21	67	25	60	66	3	1	28	1.17
6267916--6267976	27	2.2	27	80	11	70	68	3	1	26	1.14
6267885--6267974	39	2.5	35	74	20	85	68	4	1	25	1.15
6268828--6268879	25	2.0	26	96	3	97	26	26	19	26	1.99
6269728--6269777	26	1.9	26	91	0	82	26	28	18	28	1.98
6268098--6270836	900	3.1	887	87	2	3773	25	24	24	25	2.00
6271373--6271423	26	2.0	26	96	0	93	25	25	19	29	1.99
6272213--6272265	26	2.0	26	96	0	97	26	24	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6272381--6273953	809	1.9	809	89	1	2452	26	24	23	25	2.00
6273923--6273975	26	2.0	26	85	7	72	26	24	18	30	1.98
6273158--6276784	891	4.0	889	87	3	4872	25	25	24	25	2.00
6275934--6275965	12	2.7	12	95	0	55	12	34	18	34	1.89
6276407--6276436	4	7.5	4	100	0	60	0	73	26	0	0.84
6276617--6276669	26	2.0	26	92	0	88	26	28	18	26	1.98
6277766--6277818	26	2.0	26	92	0	88	28	24	18	28	1.98
6278652--6278703	26	2.0	25	92	3	86	26	26	17	28	1.97
6276802--6279781	893	3.3	880	85	3	3779	24	24	24	25	2.00
6279547--6279599	26	2.0	26	92	0	88	28	24	18	28	1.98
6280684--6280736	26	2.0	26	89	7	81	26	20	24	28	1.99
6281576--6281629	26	2.1	26	92	0	90	24	22	24	29	1.99
6283164--6283216	26	2.0	26	92	0	88	24	24	22	28	2.00
6284051--6284103	26	2.0	26	85	7	72	30	20	18	30	1.97
6284937--6284999	26	2.5	26	87	5	94	30	25	19	25	1.98
6285615--6285644	4	7.5	4	92	0	51	3	73	23	0	0.98
6282488--6293462	887	12.5	873	79	9	9785	26	24	23	25	2.00
6288454--6288506	26	2.0	26	96	0	97	26	24	20	28	1.99
6290112--6290164	26	2.0	26	88	0	79	30	22	18	28	1.98
6289841--6293462	891	4.1	882	79	10	3628	26	24	23	25	2.00
6292820--6292870	26	2.0	26	92	0	84	29	27	13	29	1.94
6294388--6294440	26	2.0	26	92	0	88	28	24	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6295185--6295237	26	2.0	26	96	0	97	26	26	18	28	1.98
6294052--6296452	810	3.0	794	88	3	3712	23	24	25	26	2.00
6295995--6296046	25	2.0	26	96	3	97	26	26	19	26	1.99
6295661--6301749	864	6.8	867	79	9	5716	25	24	24	25	2.00
6300462--6300514	26	2.0	26	100	0	106	26	26	20	26	1.99
6300929--6300978	26	1.9	26	84	8	66	54	10	12	24	1.67
6300929--6300986	26	2.2	26	81	9	64	56	8	12	22	1.62
6301356--6301408	26	2.0	26	92	0	88	28	28	18	24	1.98
6302693--6302745	26	2.0	26	100	0	106	26	26	20	26	1.99
6303594--6303646	26	2.0	26	88	0	79	28	26	16	28	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120