genome.fa.s146.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  117  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18100162--18100194	3	11.0	3	100	0	66	33	0	0	66	0.92
18100687--18100728	19	2.2	20	86	4	59	26	4	2	66	1.23
18100845--18100883	13	2.9	13	88	3	51	51	7	0	41	1.31
18101106--18101167	3	20.7	3	96	0	115	66	0	1	32	1.02
18101168--18101219	12	4.2	13	80	11	65	69	13	1	15	1.28
18101160--18101219	24	2.5	25	81	5	79	70	11	1	16	1.25
18101160--18101233	25	3.1	24	78	5	78	71	10	2	14	1.24
18101109--18101245	6	22.2	6	78	8	51	70	5	3	20	1.24
18101918--18101945	9	3.1	9	100	0	56	14	0	0	85	0.59
18101959--18102014	3	18.7	3	100	0	112	67	32	0	0	0.91
18102013--18102060	3	15.7	3	95	4	87	66	0	0	33	0.92
18102246--18102488	39	6.3	39	76	6	179	41	20	11	27	1.86
18102246--18102456	78	2.7	77	83	4	255	42	20	10	27	1.84
18102246--18102527	78	3.7	75	80	10	227	42	19	11	27	1.85
18110050--18110108	20	3.0	20	94	0	100	49	15	11	23	1.77
18115032--18115083	26	2.0	26	96	0	95	53	25	3	17	1.60
18117991--18118018	13	2.2	13	100	0	56	28	0	0	71	0.86
18122534--18122591	28	2.1	28	86	0	80	22	8	13	55	1.66
18123127--18123153	2	13.5	2	100	0	54	48	0	0	51	1.00
18125673--18125700	2	14.0	2	100	0	56	50	0	0	50	1.00
18132255--18132324	5	14.0	5	84	14	76	74	4	0	21	0.99
18132249--18132323	35	2.1	37	87	9	111	74	6	0	18	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18132260--18132324	30	2.1	30	86	13	89	73	4	0	21	1.00
18132531--18132801	42	6.5	40	82	8	276	43	14	17	25	1.86
18132531--18132801	83	3.3	82	87	3	364	43	14	17	25	1.86
18132539--18132801	125	2.1	124	85	2	348	43	14	17	24	1.86
18133054--18133106	21	2.5	22	75	9	65	35	13	7	43	1.72
18133062--18133109	21	2.3	21	82	3	71	33	14	8	43	1.75
18142786--18142835	3	16.7	3	95	0	91	68	2	0	30	1.01
18142826--18142875	22	2.3	22	82	3	66	70	10	2	18	1.25
18142849--18142900	13	4.2	13	85	9	65	78	9	0	11	0.95
18142784--18142897	6	18.7	6	75	13	54	71	7	0	20	1.14
18142847--18142900	25	2.2	24	87	6	74	77	9	0	12	0.98
18142849--18142900	12	4.2	12	83	9	61	78	9	0	11	0.95
18143142--18143194	20	2.7	19	88	5	70	49	16	13	20	1.79
18143887--18144247	39	9.3	39	81	4	363	44	20	10	24	1.82
18143887--18144247	78	4.6	77	84	4	411	44	20	10	24	1.82
18143887--18144286	117	3.5	116	82	6	458	44	20	10	24	1.82
18144184--18144280	33	2.8	33	81	9	104	44	17	12	25	1.84
18159536--18159578	14	2.9	15	76	16	54	44	6	25	23	1.78
18160590--18160620	16	1.9	16	93	0	53	22	3	0	74	0.96
18161072--18161102	16	2.0	16	93	6	55	25	0	0	74	0.82
18162202--18162254	16	3.2	16	81	7	54	75	5	1	16	1.08
18162197--18162254	17	3.5	17	79	6	57	75	6	1	15	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18162535--18162587	27	2.0	26	81	3	61	43	0	9	47	1.36
18165101--18165167	30	2.2	31	86	2	91	35	14	16	32	1.90
18165101--18165172	31	2.4	30	85	2	90	34	13	18	33	1.90
18165978--18166054	30	2.6	30	91	0	118	38	15	18	27	1.91
18170545--18170782	125	1.9	119	85	6	325	41	14	8	35	1.76
18173713--18173753	21	2.0	21	86	9	59	41	4	9	43	1.59
18180027--18180080	21	2.6	19	75	16	54	18	1	1	77	0.95
18180030--18180083	22	2.5	22	80	17	67	16	3	1	77	1.00
18181118--18181158	18	2.3	17	84	12	55	19	2	7	70	1.22
18182032--18182056	8	3.1	8	100	0	50	12	0	0	88	0.53
18182051--18182098	18	2.7	18	80	6	62	45	0	0	54	0.99
18184857--18184886	2	15.0	2	92	0	51	50	3	0	46	1.18
18186021--18186088	32	2.1	33	94	2	120	47	29	8	14	1.75
18189872--18189906	16	2.2	16	90	10	54	77	0	0	22	0.78
18190934--18190966	11	3.2	11	87	12	52	42	0	0	57	0.98
18193546--18193611	30	2.2	30	83	0	78	42	10	3	43	1.54
18194501--18194530	5	5.8	5	92	7	51	83	0	0	16	0.65
18194501--18194531	11	2.9	11	95	4	55	83	0	0	16	0.64
18194500--18194530	16	1.9	16	100	0	62	83	0	0	16	0.64
18203490--18204086	59	9.9	58	82	12	683	34	13	7	45	1.71
18203906--18204085	68	2.9	66	82	12	188	34	12	7	46	1.69
18204153--18204186	13	2.5	13	95	4	59	79	5	0	14	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18207466--18207558	25	3.7	24	78	17	100	49	0	1	49	1.07
18207482--18207549	12	5.4	14	72	21	53	52	0	0	47	1.00
18207487--18207580	26	3.8	24	74	13	75	52	0	0	47	1.00
18209631--18209659	12	2.4	12	100	0	58	24	0	6	68	1.13
18236097--18236127	16	1.9	16	93	0	53	29	3	0	67	1.06
18250871--18250897	8	3.4	8	100	0	54	37	0	14	48	1.45
18250967--18250995	14	2.0	15	93	6	51	51	0	0	48	1.00
18251145--18251198	15	3.8	15	73	26	55	61	0	0	38	0.96
18251343--18251381	15	2.5	15	83	4	51	61	0	0	38	0.96
18251463--18251505	21	2.0	21	82	8	52	44	2	0	53	1.13
18258882--18258913	15	2.1	15	94	0	55	18	3	6	71	1.20
18263889--18263924	3	12.3	3	94	5	65	33	0	0	66	0.92
18263889--18263921	17	1.9	17	100	0	66	33	0	0	66	0.92
18264877--18264931	3	18.3	3	96	0	101	30	0	1	67	1.01
18276084--18276127	21	2.1	21	86	0	61	9	56	2	31	1.43
18277262--18277329	32	2.1	33	81	8	77	1	5	14	77	1.02
18280645--18280729	42	2.0	42	95	0	152	35	8	22	34	1.84
18281123--18281178	3	18.7	3	100	0	112	33	0	0	66	0.92
18283738--18283798	19	2.9	21	83	11	63	34	4	1	59	1.29
18294257--18294333	39	2.0	39	92	0	127	32	37	5	24	1.78
18297077--18297137	30	2.0	30	93	0	104	34	18	8	39	1.80
18304314--18304381	20	3.3	21	80	11	79	32	1	0	66	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18304311--18304369	17	3.5	17	80	17	61	33	0	0	66	0.92
18304337--18304378	13	3.2	13	80	12	50	30	2	0	66	1.04
18304338--18304424	24	3.3	27	78	16	101	33	4	0	62	1.16
18304307--18304400	37	2.5	37	77	13	93	32	3	0	63	1.10
18305305--18305337	6	5.5	6	89	10	50	18	3	0	78	0.87
18305372--18305545	60	2.9	57	84	9	206	47	4	15	33	1.64
18305546--18305717	55	3.0	55	81	7	168	50	5	9	35	1.57
18306846--18307101	66	3.9	66	84	1	271	34	13	20	31	1.91
18306844--18307101	132	2.0	132	82	3	313	34	13	20	31	1.91
18310593--18310648	16	3.4	17	81	16	64	67	0	0	32	0.91
18310592--18310659	18	3.5	19	70	21	59	69	0	0	30	0.89
18310598--18310662	12	5.2	12	76	21	62	66	0	0	33	0.92
18316586--18316627	2	21.0	2	100	0	84	0	50	0	50	1.00
18320884--18321050	52	3.1	52	60	13	122	24	22	21	31	1.98
18320854--18321070	108	2.0	108	100	0	434	25	21	23	29	1.99
18321170--18321195	2	13.0	2	100	0	52	50	0	0	50	1.00
18327407--18327443	2	18.5	2	100	0	74	0	51	0	48	1.00
18337451--18337541	28	3.2	28	65	21	71	42	3	13	40	1.60
18337428--18337716	58	4.9	57	87	5	393	46	3	11	38	1.58
18337428--18337716	116	2.5	118	86	5	433	46	3	11	38	1.58
18337640--18337675	19	1.9	19	88	5	56	47	5	5	41	1.50
18340907--18340961	12	4.7	12	75	11	60	80	0	12	7	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18340917--18340956	22	1.9	22	90	10	66	80	0	15	5	0.88
18342066--18342114	21	2.3	21	86	6	64	40	12	10	36	1.77
18342166--18342203	20	1.9	20	94	0	67	42	13	18	26	1.87
18342497--18342804	41	7.4	41	80	5	244	25	9	18	46	1.79
18342497--18342759	124	2.1	124	83	4	332	25	9	18	46	1.78
18342495--18342714	83	2.6	83	81	7	259	25	7	20	46	1.76
18343885--18343974	27	3.2	26	66	22	65	43	4	14	37	1.66
18343863--18344006	58	2.5	59	90	4	229	49	4	9	36	1.57
18344324--18344410	44	2.0	44	100	0	174	49	4	11	34	1.60
18344371--18344663	59	4.9	58	84	7	367	46	4	9	39	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120