genome.fa.s146.2.7.7.80.10.50.1000.40.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  40  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4464306--4464358	26	2.0	26	88	0	79	26	18	26	28	1.98
4463672--4465921	881	2.6	821	84	7	2514	26	23	23	26	2.00
4465130--4465182	26	2.0	26	100	0	106	26	20	26	26	1.99
4466792--4466842	26	2.0	26	100	0	102	27	19	25	27	1.99
4467850--4467902	26	2.0	26	100	0	106	26	20	26	26	1.99
4468735--4468785	26	2.0	26	92	0	84	25	13	31	29	1.94
4471277--4471328	26	2.0	26	92	7	88	26	15	26	30	1.96
4470763--4473016	869	2.6	864	85	5	2911	25	24	23	26	2.00
4479655--4479707	26	2.0	26	96	0	97	26	18	26	28	1.98
4482144--4482196	26	2.0	26	96	0	97	24	20	28	26	1.99
4483910--4483961	26	2.0	26	92	0	86	28	15	23	32	1.95
4481412--4486585	872	5.9	870	85	5	6407	25	24	24	25	2.00
4483966--4486688	892	3.1	889	84	5	3318	24	24	25	25	2.00
4486735--4486787	27	2.0	27	92	0	88	30	18	24	26	1.98
4486906--4486958	26	2.0	26	92	0	88	26	18	24	30	1.98
4487940--4488421	251	1.9	251	89	0	748	25	17	17	39	1.91
4490349--4490401	26	2.0	26	96	0	97	28	20	24	26	1.99
4491216--4491268	26	2.0	26	96	0	97	28	20	24	26	1.99
4492092--4492143	25	2.0	26	96	3	97	25	21	26	26	1.99
4491301--4493009	894	1.9	900	88	2	2589	25	25	23	25	2.00
4492965--4493341	159	2.4	159	87	0	531	22	30	28	18	1.97
4495517--4495569	26	2.0	26	92	0	88	28	18	24	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4496417--4496469	26	2.0	26	92	0	88	26	16	26	30	1.97
4494881--4498236	900	3.7	898	88	2	4844	25	23	24	26	2.00
4497318--4497370	26	2.0	26	96	0	97	26	18	26	28	1.98
4499792--4499843	26	2.0	25	96	3	95	26	19	26	26	1.99
4500696--4500745	26	1.9	26	87	0	73	34	20	26	20	1.96
4502483--4502535	26	2.0	26	88	0	79	32	20	20	26	1.98
4504269--4504321	26	2.0	26	96	0	97	28	20	24	26	1.99
4498189--4507888	902	10.9	901	86	3	12548	25	24	24	25	2.00
4506070--4506122	26	2.0	26	96	0	97	28	16	26	28	1.97
4506961--4507013	26	2.0	26	88	0	79	26	20	20	32	1.98
4508699--4508751	26	2.0	26	96	0	97	26	22	24	26	2.00
4509596--4509648	26	2.0	26	96	0	97	26	15	26	32	1.95
4510491--4510543	26	2.0	26	100	0	106	26	20	26	26	1.99
4507891--4518429	904	11.8	902	85	4	13297	25	24	24	26	2.00
4511395--4511446	26	2.0	26	96	0	95	26	19	25	28	1.98
4514070--4514122	26	2.0	26	88	0	79	28	16	26	28	1.97
4515866--4515918	26	2.0	26	88	0	79	28	16	26	28	1.97
4517627--4517679	26	2.0	26	92	0	88	24	20	26	28	1.99
4518139--4518733	304	2.0	305	92	1	1007	28	24	21	25	1.99
4518834--4518886	26	2.0	26	92	0	88	26	20	26	26	1.99
4518437--4521883	906	3.9	899	84	4	4424	25	24	25	25	2.00
4521879--4524878	901	3.4	900	88	6	4320	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4524165--4525539	713	1.9	712	88	2	2075	26	23	23	26	2.00
4524855--4527518	898	3.0	894	87	2	3762	25	23	24	25	2.00
4528073--4528125	26	2.0	26	96	0	97	28	20	24	26	1.99
4530645--4530697	26	2.0	26	96	0	97	24	22	26	26	2.00
4529164--4534047	896	5.5	872	83	6	5360	25	23	24	26	2.00
4533291--4533342	25	2.0	26	88	3	79	28	23	21	26	1.99
4533566--4534532	485	2.0	487	90	1	1521	27	19	21	32	1.97
4534048--4535800	902	1.9	901	90	1	2757	25	24	23	26	2.00
4535924--4535976	26	2.0	26	88	0	79	24	16	30	28	1.97
4536612--4537020	185	2.2	185	87	2	572	23	29	26	20	1.99
4538359--4538409	26	2.0	26	96	0	93	27	17	29	25	1.98
4538715--4540560	903	2.1	895	88	2	2761	25	24	24	25	2.00
4540161--4540955	398	2.0	399	90	1	1245	25	26	23	23	2.00
4540885--4540937	26	2.0	26	92	0	88	28	20	20	30	1.98
4542680--4542732	26	2.0	26	96	0	97	28	24	20	26	1.99
4543571--4543623	26	2.0	26	88	0	79	28	16	24	30	1.97
4545344--4545396	26	2.0	26	88	0	79	28	24	22	24	2.00
4540559--4546652	902	6.8	900	86	2	7944	25	24	24	25	2.00
4546700--4547491	399	2.0	398	88	1	1192	26	27	23	23	2.00
4547425--4547477	26	2.0	26	92	0	88	28	20	20	30	1.98
4547098--4553458	902	7.1	898	85	3	8241	25	24	24	26	2.00
4549227--4549278	25	2.0	26	85	3	70	28	19	23	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4550096--4550148	26	2.0	26	88	0	79	28	20	24	26	1.99
4555314--4555372	26	2.3	26	94	5	104	25	20	27	27	1.99
4556181--4556233	26	2.0	26	100	0	106	26	20	26	26	1.99
4556439--4556490	25	2.0	26	92	3	88	26	19	25	28	1.98
4557341--4557393	26	2.0	26	88	0	79	30	20	24	24	1.99
4556330--4558512	903	2.4	900	89	2	3252	24	24	26	24	2.00
4558245--4558297	26	2.0	26	92	0	88	28	18	26	26	1.98
4558963--4559015	26	2.0	26	96	0	97	26	18	26	28	1.98
4559861--4559913	26	2.0	26	96	0	97	26	18	26	28	1.98
4560535--4560585	26	2.0	26	100	0	102	27	19	27	25	1.99
4560091--4566789	866	7.5	863	78	10	6345	25	24	24	25	2.00
4563384--4563412	4	7.2	4	100	0	58	0	27	72	0	0.85
4564060--4564138	26	3.0	26	90	0	131	26	21	25	26	1.99
4562283--4566839	924	5.1	902	80	8	5103	25	24	24	25	2.00
4565869--4565921	26	2.0	26	92	0	88	28	16	28	26	1.97
4568377--4568427	26	2.0	26	92	0	84	33	17	25	23	1.96
4572692--4572747	26	2.2	26	90	0	85	28	19	19	32	1.97
4570983--4577269	901	7.1	879	79	10	5990	25	24	24	25	2.00
4573599--4573651	26	2.0	26	92	0	88	28	18	24	28	1.98
4578443--4581847	903	3.9	876	85	5	4350	24	23	25	26	2.00
4581093--4581148	26	2.2	26	90	0	85	30	21	21	26	1.98
4581827--4581860	13	2.6	13	95	0	59	32	41	11	14	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4584529--4584581	26	2.0	26	88	0	79	26	22	24	26	2.00
4581864--4601563	903	21.6	895	77	9	15307	25	24	24	25	2.00
4585430--4585471	20	2.1	20	90	0	66	30	19	26	23	1.98
4586311--4586363	26	2.0	26	96	0	97	26	18	26	28	1.98
4587203--4587255	26	2.0	26	92	0	88	28	22	22	26	1.99
4588106--4588158	26	2.0	26	92	7	90	28	18	26	26	1.98
4589013--4589065	26	2.0	26	96	0	97	26	18	26	28	1.98
4589911--4589963	26	2.0	26	92	0	88	28	22	22	26	1.99
4581864--4593495	904	13.0	902	86	3	14727	25	24	25	25	2.00
4590816--4590868	26	2.0	26	92	0	88	28	22	22	26	1.99
4592622--4592674	26	2.0	26	92	0	88	30	20	22	26	1.98
4592881--4594190	678	1.9	679	91	1	2119	26	22	23	27	2.00
4594198--4594250	26	2.0	26	96	0	97	28	20	24	26	1.99
4594671--4594749	26	3.0	25	92	3	122	27	18	24	29	1.98
4595599--4595651	26	2.0	26	92	0	88	28	18	24	28	1.98
4596500--4596552	26	2.0	26	100	0	106	26	20	26	26	1.99
4594391--4601563	877	8.0	902	83	6	8211	25	24	24	25	2.00
4597443--4597495	26	2.0	26	92	0	88	28	20	22	28	1.99
4599222--4599300	26	3.0	26	90	0	122	29	17	25	27	1.98
4600156--4600208	26	2.0	26	88	0	79	30	22	20	26	1.98
4602233--4602285	26	2.0	26	96	0	97	26	15	26	32	1.95
4603130--4603182	26	2.0	26	96	0	97	24	20	28	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4604939--4604991	26	2.0	26	96	0	97	26	18	26	28	1.98
4601580--4608320	893	7.5	891	86	3	8798	25	23	24	26	2.00
4605830--4605881	25	2.0	26	88	3	79	26	17	26	28	1.97
4608301--4608332	12	2.7	12	95	0	55	34	18	34	12	1.89
4608390--4608446	26	2.2	26	93	0	96	29	19	24	26	1.98
4608846--4610748	901	2.1	881	85	3	2472	25	23	24	25	2.00
4610213--4611270	526	2.0	526	84	2	1377	26	24	24	24	2.00
4611679--4613828	708	3.0	704	87	3	2987	24	26	26	22	2.00
4615220--4615272	26	2.0	26	88	0	79	28	16	24	30	1.97
4616122--4616174	26	2.0	26	92	0	88	28	18	24	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120