genome.fa.s146.2.7.7.80.10.50.1000.34.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  34  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3724141--3724193	26	2.0	26	100	0	106	26	16	26	30	1.97
3724681--3724733	26	2.0	26	89	7	81	30	18	22	28	1.98
3724855--3724906	26	2.0	25	92	3	86	26	19	25	28	1.98
3724659--3725155	173	2.8	177	82	6	542	25	28	25	20	1.99
3725038--3725090	26	2.0	26	85	0	70	26	24	24	24	2.00
3726027--3726184	45	3.5	45	75	1	120	18	31	30	19	1.96
3726973--3727023	26	2.0	26	92	0	84	27	11	27	33	1.92
3728073--3728110	13	2.9	13	100	0	76	23	15	36	23	1.94
3728172--3728309	45	3.1	45	70	6	127	21	31	28	18	1.97
3730876--3730900	13	1.9	13	100	0	50	16	16	44	24	1.86
3731402--3731454	26	2.0	26	92	0	88	24	22	26	26	2.00
3731727--3731874	45	3.3	45	77	0	134	18	31	31	19	1.96
3732765--3732943	45	4.0	44	83	3	205	15	31	32	20	1.94
3732753--3732939	90	2.1	90	85	2	250	16	31	32	19	1.94
3733896--3733948	26	2.0	26	92	0	88	24	18	28	28	1.98
3734825--3734849	13	1.9	13	100	0	50	24	16	36	24	1.94
3734886--3735004	45	2.6	45	75	5	123	18	30	30	21	1.97
3736203--3736227	13	1.9	13	100	0	50	24	16	36	24	1.94
3736881--3736932	26	2.0	26	84	0	68	30	17	15	36	1.91
3737178--3737239	26	2.4	26	91	0	97	24	17	25	32	1.97
3736882--3737493	305	2.0	305	82	0	731	23	27	28	20	1.99
3738442--3738497	23	2.4	23	100	0	112	23	14	37	25	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3738528--3738737	45	4.7	45	73	2	179	19	29	30	20	1.97
3738528--3738787	90	2.9	90	85	1	315	20	29	30	20	1.97
3738528--3738790	45	5.8	45	68	3	134	19	29	30	20	1.97
3739083--3740143	333	3.2	331	80	3	1211	24	27	26	20	1.99
3739907--3739959	26	2.0	26	88	0	79	30	18	24	26	1.98
3740256--3740314	26	2.3	26	83	11	79	25	18	27	28	1.98
3741257--3741414	45	3.5	44	72	5	138	19	32	28	19	1.96
3741869--3741920	26	2.0	26	96	0	95	28	19	25	26	1.98
3742219--3742277	26	2.3	26	80	5	77	23	16	27	32	1.96
3743589--3743942	196	1.8	196	81	1	440	21	25	28	24	1.99
3745211--3745263	26	2.0	26	92	0	88	24	20	26	28	1.99
3745568--3745624	26	2.2	26	80	3	60	31	21	24	22	1.98
3745906--3745958	26	2.0	26	92	7	90	26	16	26	30	1.97
3745559--3746316	341	2.2	344	84	2	943	24	27	25	22	2.00
3745563--3746457	341	2.6	341	81	4	856	23	27	26	21	1.99
3746446--3746497	26	2.0	25	89	10	79	25	17	26	30	1.97
3746446--3746497	25	2.0	26	89	10	81	25	17	26	30	1.97
3746249--3746613	195	1.9	196	80	5	434	21	26	28	22	1.99
3746241--3746649	195	2.1	196	77	4	423	21	27	27	23	1.99
3753536--3753586	26	2.0	26	88	7	77	27	17	27	27	1.98
3753750--3754276	159	3.2	158	73	11	466	22	28	28	20	1.99
3754037--3754089	26	2.0	26	92	0	88	24	18	28	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3754379--3754449	26	2.7	26	97	0	133	26	12	28	32	1.93
3754601--3754653	26	2.0	26	88	0	79	26	18	26	28	1.98
3754405--3754808	196	2.1	196	80	2	454	23	27	25	22	1.99
3756859--3756910	26	2.0	26	88	0	77	26	17	26	28	1.97
3756688--3757132	195	2.3	194	80	3	491	24	26	26	22	2.00
3758138--3758162	13	1.9	13	100	0	50	24	16	36	24	1.94
3760268--3760318	26	2.0	26	96	0	93	29	19	25	25	1.99
3760113--3760686	291	2.0	290	81	4	674	26	25	28	20	1.99
3761245--3761295	26	2.0	26	92	0	84	25	15	27	31	1.96
3762298--3762350	26	2.0	26	92	0	88	24	15	30	30	1.95
3763857--3763951	45	2.1	45	80	3	102	16	33	31	17	1.93
3763867--3764021	45	3.4	45	82	3	168	18	32	30	18	1.95
3765628--3765830	90	2.3	90	83	1	246	16	32	31	19	1.94
3765628--3765841	45	4.7	45	74	2	196	16	32	31	20	1.94
3766447--3766499	26	2.0	26	85	7	72	24	18	26	30	1.98
3767198--3767238	16	2.6	16	88	0	64	29	48	12	9	1.72
3767374--3767473	45	2.2	45	87	0	137	18	27	32	23	1.97
3768023--3768223	45	4.5	45	73	9	158	18	31	29	20	1.96
3767979--3768183	90	2.3	91	79	6	213	19	32	27	20	1.97
3768986--3769038	26	2.0	26	100	0	106	26	20	26	26	1.99
3769342--3769393	26	2.0	27	84	3	70	28	13	26	30	1.94
3770253--3770287	11	3.3	11	92	4	54	34	25	20	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3776716--3777215	148	3.3	147	75	8	428	24	27	26	21	1.99
3777022--3777600	148	3.8	148	71	15	369	23	28	27	21	1.99
3776725--3777810	307	3.5	305	78	5	1011	23	28	27	20	1.99
3778127--3778179	26	2.0	26	96	0	97	24	16	28	30	1.97
3779044--3779073	10	3.0	10	95	0	51	26	20	33	20	1.97
3779739--3779791	26	2.0	26	96	0	97	30	18	22	28	1.98
3786825--3786877	26	2.0	26	92	0	88	26	20	26	26	1.99
3787752--3787815	13	4.9	13	90	0	101	18	14	42	25	1.88
3787821--3788029	45	4.6	45	75	4	152	21	31	27	19	1.97
3787848--3788015	90	1.9	90	82	2	212	22	32	26	17	1.97
3789843--3789895	26	2.0	26	96	0	97	26	18	26	28	1.98
3789123--3793973	870	5.5	870	85	4	5954	25	24	24	25	2.00
3793355--3793407	26	2.0	26	96	0	97	30	15	22	32	1.94
3794806--3794858	26	2.0	26	96	0	97	26	18	26	28	1.98
3795668--3795720	26	2.0	26	92	0	88	28	18	24	28	1.98
3796562--3796614	26	2.0	26	100	0	106	26	20	26	26	1.99
3797464--3797516	26	2.0	26	96	0	97	26	18	26	28	1.98
3795642--3798442	903	3.1	892	86	3	3752	25	24	24	25	2.00
3798746--3798797	26	2.0	26	88	0	77	28	15	25	30	1.96
3798056--3798811	381	2.0	383	83	4	977	27	26	23	22	1.99
3799650--3799702	26	2.0	26	96	0	97	26	22	24	26	2.00
3798445--3814294	903	17.7	893	83	5	17891	25	23	25	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3802323--3802375	26	2.0	26	92	7	90	26	16	26	30	1.97
3804105--3804157	26	2.0	26	96	0	97	26	18	26	28	1.98
3804998--3805050	26	2.0	26	96	0	97	26	18	26	28	1.98
3805863--3806048	101	1.8	101	83	2	248	22	28	24	24	1.99
3806872--3806924	26	2.0	26	100	0	106	30	20	22	26	1.98
3808625--3808677	26	2.0	26	96	0	97	26	18	26	28	1.98
3809493--3809543	26	2.0	26	84	7	68	33	17	21	27	1.96
3810392--3810444	26	2.0	26	88	0	79	30	16	26	26	1.97
3812189--3812241	26	2.0	26	88	0	79	28	22	22	26	1.99
3815729--3815781	26	2.0	26	96	0	97	26	20	24	28	1.99
3814851--3834579	902	22.2	892	84	5	23285	25	24	24	25	2.00
3817481--3817533	26	2.0	26	96	0	97	28	20	24	26	1.99
3819281--3819333	26	2.0	26	85	0	70	32	20	20	26	1.98
3821052--3821102	26	2.0	26	92	0	84	29	13	25	31	1.94
3822833--3822885	26	2.0	26	88	0	79	28	16	24	30	1.97
3823732--3823784	26	2.0	26	85	0	70	24	18	28	28	1.98
3824623--3824674	26	2.0	26	96	0	95	28	19	21	30	1.97
3825528--3825580	26	2.0	26	88	0	79	26	22	26	24	2.00
3827249--3827540	159	1.8	157	79	7	338	21	28	30	19	1.97
3828146--3828198	26	2.0	26	92	0	88	26	20	24	28	1.99
3829927--3829979	26	2.0	26	92	0	88	30	16	24	28	1.97
3831723--3831773	26	2.0	26	96	0	93	27	17	27	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3833444--3833496	26	2.0	26	92	0	88	28	18	24	28	1.98
3836028--3836080	26	2.0	26	96	0	97	26	22	24	26	2.00
3836927--3836976	26	1.9	26	91	0	82	28	18	26	28	1.98
3837795--3837847	26	2.0	26	85	0	70	26	20	26	26	1.99
3838700--3838752	26	2.0	26	85	7	72	28	16	26	28	1.97
3839602--3839654	26	2.0	26	92	0	88	28	18	26	26	1.98
3839687--3839923	117	2.0	117	83	3	298	20	27	30	21	1.98
3839804--3840786	513	1.9	509	87	1	1430	25	21	24	28	1.99
3840303--3846523	903	7.0	901	85	5	7964	25	23	25	25	2.00
3843811--3843863	26	2.0	26	92	0	88	28	16	26	28	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120