genome.fa.s146.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  8  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
825286--825443	16	9.9	16	71	21	86	67	2	1	28	1.11
825285--825434	4	39.8	4	70	19	69	68	2	1	28	1.09
825313--825443	23	5.6	23	73	20	85	67	3	1	28	1.15
825302--825446	21	6.4	21	70	22	73	67	2	1	28	1.13
825308--825398	42	2.3	38	82	14	105	67	2	1	29	1.10
825283--825443	31	5.4	29	70	24	90	68	2	1	27	1.10
825292--825435	62	2.3	62	76	13	145	68	2	1	28	1.10
825283--825444	19	9.2	16	71	20	60	68	2	1	27	1.10
825645--825698	1	54.0	1	77	0	54	0	1	9	88	0.58
825645--825697	10	5.6	10	82	17	69	0	1	9	88	0.58
825645--825696	9	5.7	9	84	11	70	0	1	9	88	0.59
825645--825698	27	2.0	27	92	3	90	0	1	9	88	0.58
825706--826000	41	7.1	41	88	3	405	36	24	16	22	1.94
825706--826000	83	3.6	82	90	3	423	36	24	16	22	1.94
825706--826000	124	2.4	121	90	4	455	36	24	16	22	1.94
827263--827300	15	2.5	15	91	4	58	0	18	0	81	0.69
831100--831134	6	5.8	6	100	0	70	68	14	0	17	1.21
831171--831346	58	3.0	60	87	5	259	34	11	7	46	1.69
831171--831343	60	2.9	59	89	5	251	34	11	8	46	1.70
831354--831402	14	3.4	14	80	5	53	75	2	8	14	1.12
831349--831388	14	2.5	17	73	23	50	75	0	10	15	1.05
832489--832580	35	2.6	36	76	23	97	68	4	1	26	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
832495--832580	24	3.7	22	76	16	75	68	4	1	25	1.16
833433--833485	26	2.0	26	96	0	97	28	26	18	26	1.98
832702--838343	904	6.4	901	87	4	7752	25	25	24	25	2.00
837006--837058	26	2.0	26	96	0	97	26	24	18	30	1.98
839820--839864	3	14.7	3	82	13	56	66	0	0	33	0.92
839820--839865	19	2.5	17	80	16	56	67	0	0	32	0.91
839883--839949	24	2.8	23	76	13	64	68	4	1	25	1.17
840169--840219	8	6.4	8	82	13	61	0	1	9	88	0.60
840163--840219	19	3.1	19	83	14	66	1	3	10	84	0.82
840187--840219	14	2.4	14	95	5	59	0	0	9	90	0.44
840169--840219	13	3.8	13	80	10	59	0	1	9	88	0.60
840170--840217	24	2.0	25	91	4	80	0	2	10	87	0.62
840227--840388	39	4.1	40	90	7	242	37	24	16	22	1.93
840389--840498	40	2.7	40	82	10	143	36	22	15	25	1.94
841773--841808	12	2.9	13	88	12	58	0	13	0	86	0.58
841773--841808	13	2.8	12	91	8	54	0	13	0	86	0.58
841788--841841	29	2.0	26	85	10	72	7	22	0	70	1.12
845591--845619	6	4.8	6	100	0	58	68	13	0	17	1.20
845654--845822	58	2.8	59	88	7	252	34	11	8	44	1.72
845654--845822	60	2.8	59	89	7	252	34	11	8	44	1.72
845840--845895	14	4.2	13	75	8	51	75	1	7	16	1.11
846782--846833	18	2.9	18	70	13	54	63	0	7	28	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
846932--847057	4	30.5	4	68	19	55	65	3	1	29	1.17
846922--847066	18	8.2	18	69	20	74	66	3	1	28	1.16
846974--847067	39	2.4	39	75	22	99	69	4	1	25	1.13
847918--847970	26	2.0	26	96	0	97	28	26	18	26	1.98
847192--860447	902	14.8	899	82	5	15286	25	25	24	25	2.00
853298--853350	26	2.0	26	96	0	97	28	26	18	26	1.98
854200--854251	26	2.0	26	96	0	95	28	26	17	26	1.97
852426--858193	903	6.4	899	87	1	7981	25	25	24	24	2.00
855102--855154	26	2.0	26	85	7	72	26	22	18	32	1.97
856907--856959	26	2.0	26	92	0	88	30	24	18	26	1.98
847214--894420	904	52.6	900	76	9	33674	25	24	24	25	2.00
861128--861180	26	2.0	26	92	0	88	26	22	20	30	1.98
862011--862063	26	2.0	26	100	0	106	26	26	20	26	1.99
862661--862737	26	3.0	26	94	0	136	29	28	14	27	1.95
864455--864507	26	2.0	26	96	0	97	26	24	20	28	1.99
864486--864685	108	1.9	108	83	0	265	17	25	29	28	1.97
866293--866345	26	2.0	26	100	0	106	26	26	20	26	1.99
868024--868076	26	2.0	26	96	0	97	26	24	20	28	1.99
868905--868957	26	2.0	26	92	0	88	26	26	20	26	1.99
869797--869876	26	3.1	26	90	0	124	27	26	17	28	1.98
873325--873375	26	2.0	26	96	0	93	29	27	13	29	1.94
874218--874268	26	2.0	26	96	0	93	27	27	15	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
875081--875133	26	2.0	26	96	0	97	26	24	20	28	1.99
877729--877779	26	2.0	26	100	0	102	27	19	21	31	1.97
880388--880440	26	2.0	26	88	0	79	26	20	20	32	1.98
881275--881334	26	2.4	26	86	8	81	26	25	20	28	1.99
885668--885718	26	2.0	26	96	0	93	27	27	13	31	1.94
888343--888395	26	2.0	26	96	0	97	28	26	18	26	1.98
890992--891044	26	2.0	26	96	0	97	28	24	20	26	1.99
892764--892816	26	2.0	26	100	0	106	26	26	20	26	1.99
893668--893720	26	2.0	26	96	0	97	28	26	18	26	1.98
895901--895953	26	2.0	26	96	0	97	28	24	20	26	1.99
896799--896851	26	2.0	26	92	0	88	28	24	18	28	1.98
896640--897065	185	2.3	185	85	4	574	21	28	28	21	1.99
896825--900141	903	3.7	897	84	4	4296	25	24	24	25	2.00
898568--898592	13	1.9	13	100	0	50	12	32	40	16	1.84
899675--899727	26	2.0	26	88	0	79	28	26	18	26	1.98
900387--900439	26	2.0	26	92	0	88	26	26	18	28	1.98
901427--901459	11	3.0	11	83	16	50	18	27	36	18	1.94
902171--902223	26	2.0	26	88	0	79	35	26	15	22	1.93
903869--903921	26	2.0	26	92	0	88	26	22	20	30	1.98
904057--904106	26	1.9	26	87	0	73	28	22	20	30	1.98
903895--908605	895	5.3	887	77	10	4210	25	24	24	25	2.00
905851--905899	26	1.9	26	95	4	91	26	24	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
903895--906715	902	3.1	898	85	4	3597	25	24	24	25	2.00
907589--907639	26	2.0	26	100	0	102	23	27	19	29	1.98
909980--910030	26	2.0	26	96	0	93	25	25	19	29	1.99
909892--910225	185	1.8	185	87	1	499	20	27	27	24	1.99
910165--910217	26	2.0	26	85	0	70	30	18	22	28	1.98
911057--911109	26	2.0	26	96	0	97	26	22	18	32	1.97
911960--912012	26	2.0	26	96	0	97	26	24	20	28	1.99
910014--919901	892	11.0	890	85	5	11475	25	24	24	25	2.00
913728--913779	28	1.9	28	92	7	90	28	23	17	30	1.97
914635--914687	26	2.0	26	92	0	88	30	26	18	24	1.98
912854--919901	906	7.8	899	87	4	8807	25	25	24	25	2.00
915527--915579	26	2.0	26	85	0	70	26	20	22	30	1.98
917324--917405	26	3.2	26	96	0	146	30	24	18	26	1.98
918232--918310	26	3.0	26	94	0	131	29	24	18	27	1.98
916433--919797	905	3.7	906	90	3	4630	26	24	23	25	2.00
919138--919190	26	2.0	26	96	0	97	26	24	20	28	1.99
919874--919924	26	2.0	26	92	0	84	25	23	23	27	2.00
920745--920797	26	2.0	26	96	0	97	32	26	15	26	1.95
921599--921649	26	2.0	26	96	0	93	25	23	23	27	2.00
922490--922540	26	2.0	26	96	0	93	31	27	13	27	1.94
923379--923431	26	2.0	26	88	0	79	30	24	16	28	1.97
921167--929720	884	9.6	887	79	8	8275	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
925159--925211	26	2.0	26	92	0	88	28	24	18	28	1.98
925861--925899	12	3.2	12	96	0	69	0	64	33	2	1.08
926937--926988	25	2.0	26	96	3	97	26	26	19	26	1.99
929589--929641	26	2.0	26	88	0	79	28	22	18	30	1.98
929824--929876	26	2.0	26	96	0	97	26	24	20	28	1.99
930294--930344	26	2.0	26	84	0	66	52	13	11	21	1.72
930728--930780	26	2.0	26	92	0	88	26	22	20	30	1.98
931633--931685	26	2.0	26	96	0	97	22	20	26	30	1.98
929718--932397	904	3.0	896	87	3	3640	25	24	24	25	2.00
932370--932423	26	2.1	26	93	6	92	24	25	20	29	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120