genome.fa.s146.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  14  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1503384--1503436	26	2.0	26	92	0	88	26	26	20	26	1.99
1503417--1503791	172	2.2	172	87	4	547	20	25	29	24	1.99
1503757--1503835	26	3.0	26	92	0	131	26	21	20	31	1.98
1504266--1504468	45	4.5	45	81	2	210	16	29	33	21	1.95
1505409--1505461	26	2.0	26	92	0	88	28	28	18	24	1.98
1506106--1506310	45	4.6	44	75	8	191	20	27	33	19	1.96
1506109--1506310	90	2.3	91	86	4	277	19	27	33	19	1.96
1508794--1508818	9	2.8	9	100	0	50	28	12	36	24	1.91
1517875--1517927	26	2.0	26	88	0	79	28	24	16	30	1.97
1518378--1518522	45	3.2	45	76	3	139	21	31	29	17	1.96
1519253--1519405	45	3.4	45	78	0	137	19	30	32	16	1.95
1519505--1519557	26	2.0	26	92	7	90	30	26	16	26	1.97
1521374--1521426	26	2.0	26	92	0	88	28	24	18	28	1.98
1522079--1522266	45	4.2	45	75	11	145	19	31	31	17	1.95
1522079--1522266	90	2.1	89	80	5	200	19	31	31	17	1.95
1522622--1522674	26	2.0	26	92	7	90	30	22	16	30	1.96
1524196--1524248	26	2.0	26	85	7	72	28	24	18	28	1.98
1525020--1525137	45	2.6	45	83	0	137	20	28	31	19	1.97
1525400--1525452	26	2.0	26	88	0	79	32	26	13	28	1.93
1525898--1526057	45	3.6	45	77	3	124	20	29	31	18	1.96
1526100--1526124	13	1.9	13	100	0	50	24	36	16	24	1.94
1526471--1526524	26	2.1	26	93	6	92	25	22	22	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1526973--1527170	45	4.4	45	76	6	168	20	30	33	15	1.94
1527017--1527219	45	4.5	43	76	6	147	18	31	34	15	1.92
1530328--1530380	26	2.0	26	88	0	79	28	22	20	28	1.99
1530820--1530947	45	2.8	45	83	4	159	18	31	30	19	1.96
1530823--1531041	90	2.4	91	81	4	221	20	28	31	18	1.96
1530823--1531071	45	5.5	45	77	4	153	20	28	32	18	1.96
1535739--1535768	15	2.0	15	93	0	51	36	30	13	20	1.90
1537871--1537923	26	2.0	26	85	7	72	30	26	16	26	1.97
1539853--1539905	26	2.0	26	85	0	70	30	22	18	28	1.98
1540211--1540261	26	2.0	26	84	0	66	27	25	15	31	1.96
1540538--1540745	45	4.6	45	75	2	157	22	31	30	16	1.95
1540547--1540763	90	2.4	90	83	2	247	21	31	31	15	1.94
1541676--1541728	26	2.0	26	85	7	72	26	20	22	30	1.98
1542032--1542084	26	2.0	26	96	0	97	28	26	18	26	1.98
1542138--1542293	45	3.5	45	75	6	127	19	28	31	20	1.97
1542788--1542990	45	4.5	44	76	3	172	21	30	31	16	1.96
1542793--1542965	90	1.9	89	82	1	211	21	32	30	15	1.94
1542793--1542990	90	2.2	90	80	1	209	21	30	31	16	1.95
1544440--1544560	45	2.7	44	80	5	118	19	29	33	18	1.95
1545836--1545888	26	2.0	26	92	0	88	26	22	20	30	1.98
1546167--1546342	45	3.9	45	81	3	183	19	31	32	17	1.94
1546162--1546366	90	2.3	90	79	4	216	18	29	34	18	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1547269--1547321	26	2.0	26	88	0	79	26	24	20	28	1.99
1547624--1547676	26	2.0	26	92	0	88	28	24	18	28	1.98
1547700--1548125	158	2.7	158	77	2	435	20	28	25	24	1.99
1550405--1550454	26	1.9	26	95	0	91	28	24	18	30	1.97
1550867--1550919	26	2.0	26	100	0	106	26	22	20	30	1.98
1550732--1551056	162	2.0	161	80	1	364	21	28	25	24	1.99
1551391--1551415	13	1.9	13	100	0	50	24	36	16	24	1.94
1552279--1552331	26	2.0	26	92	0	88	28	28	18	24	1.98
1552124--1552486	196	1.9	196	81	4	446	23	27	27	21	1.99
1553908--1553960	26	2.0	26	92	0	88	26	26	20	26	1.99
1555844--1555896	26	2.0	26	92	0	88	28	28	18	24	1.98
1555786--1556668	452	2.0	452	82	6	1085	21	26	26	25	2.00
1556650--1556703	26	2.1	26	96	0	99	31	24	16	27	1.96
1558222--1558274	26	2.0	26	88	0	79	28	26	18	26	1.98
1560452--1560504	26	2.0	26	92	0	88	30	26	16	26	1.97
1562086--1562138	26	2.0	26	92	0	88	28	28	18	24	1.98
1563862--1563938	40	1.9	40	81	0	91	16	29	20	32	1.95
1564422--1564793	170	2.2	170	83	3	471	19	25	29	25	1.98
1564788--1564840	26	2.0	26	92	7	90	30	26	16	26	1.97
1564633--1564997	195	1.9	196	82	4	459	21	25	29	23	1.99
1566741--1566790	26	1.9	26	87	0	73	30	28	16	26	1.96
1567093--1567145	26	2.0	26	92	0	88	28	24	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1568679--1568729	26	2.0	26	96	0	93	29	27	17	25	1.98
1570467--1570519	26	2.0	26	85	0	70	26	22	16	33	1.96
1570822--1570872	26	2.0	25	96	3	93	31	23	17	27	1.97
1571323--1571479	45	3.5	44	74	8	138	19	29	31	19	1.97
1571316--1571479	90	1.8	90	84	5	224	18	29	31	20	1.96
1571321--1571524	90	2.3	90	78	8	209	19	28	31	19	1.97
1571866--1571916	26	2.0	26	96	0	93	25	29	19	25	1.99
1572702--1572906	45	4.6	45	75	7	164	20	30	30	18	1.96
1572949--1572996	13	3.9	13	76	15	57	22	39	16	20	1.92
1572949--1573004	23	2.4	23	100	0	112	21	37	17	23	1.94
1573832--1573884	26	2.0	26	92	0	88	26	26	20	26	1.99
1581525--1581577	26	2.0	26	92	0	88	26	22	22	28	1.99
1582035--1582189	45	3.5	44	76	3	139	19	28	33	18	1.96
1588776--1588828	26	2.0	26	96	0	97	26	28	20	24	1.99
1589132--1589184	26	2.0	26	96	0	97	28	26	18	26	1.98
1589623--1589816	45	4.3	45	79	2	201	18	30	32	17	1.94
1589626--1589816	90	2.1	90	83	3	233	18	30	32	17	1.94
1589626--1589846	90	2.4	91	81	5	225	19	29	33	17	1.95
1589856--1589906	23	2.2	23	100	0	102	25	39	13	21	1.90
1590770--1590848	26	3.0	26	92	3	124	32	25	15	26	1.95
1591152--1591201	26	1.9	26	95	0	91	24	26	20	30	1.98
1591664--1591783	45	2.7	45	77	3	109	21	33	29	15	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1593109--1593161	26	2.0	26	100	0	106	26	26	20	26	1.99
1593613--1593830	45	4.8	45	81	1	186	21	30	29	17	1.97
1593613--1593857	135	1.8	135	81	1	303	21	29	31	17	1.96
1596756--1596808	26	2.0	26	88	0	79	28	26	18	26	1.98
1597102--1597154	26	2.0	26	92	7	90	30	26	16	26	1.97
1604085--1604136	26	2.0	27	84	3	70	51	11	7	28	1.65
1604361--1604698	170	2.0	170	81	1	401	20	27	30	21	1.98
1604318--1604710	169	2.3	170	79	3	427	20	26	29	23	1.98
1605529--1605553	13	1.9	13	100	0	50	24	36	16	24	1.94
1606416--1606468	26	2.0	26	92	0	88	30	28	15	26	1.96
1606301--1606718	195	2.1	196	85	3	547	22	27	28	21	1.99
1606611--1606661	26	2.0	26	92	0	84	27	29	17	25	1.98
1608776--1608828	26	2.0	26	92	0	88	24	30	20	24	1.99
1609463--1609535	22	3.3	22	67	14	60	23	24	26	26	2.00
1609463--1609554	44	2.1	45	91	2	150	23	27	22	26	2.00
1610436--1610488	26	2.0	26	88	0	79	32	22	15	30	1.94
1611040--1611077	13	2.9	13	96	0	67	23	42	15	18	1.89
1613756--1614260	157	3.2	153	80	6	440	19	23	29	27	1.98
1613846--1614279	157	2.8	156	82	3	521	18	24	29	27	1.98
1614421--1614587	45	3.7	45	78	1	156	17	28	33	20	1.95
1615344--1615722	196	1.9	195	85	5	525	22	26	26	23	2.00
1615853--1615906	26	2.1	26	92	0	90	29	24	18	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1618805--1618833	9	3.2	9	100	0	58	34	10	34	20	1.87
1622522--1622735	45	4.8	44	69	11	139	21	26	31	20	1.98
1622516--1622735	90	2.4	90	81	4	246	20	26	31	20	1.98
1622760--1622807	13	3.9	13	76	15	57	22	39	16	20	1.92
1622760--1622815	23	2.4	23	100	0	112	21	37	17	23	1.94
1623682--1623735	26	2.1	26	96	0	99	25	29	20	24	1.99
1625604--1625656	26	2.0	26	88	0	79	28	26	18	26	1.98
1631466--1631549	26	3.2	26	89	1	132	28	23	19	28	1.98
1632965--1633017	26	2.0	26	92	0	88	30	22	18	28	1.98
1633632--1633681	21	2.4	21	82	0	64	20	18	44	18	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120