genome.fa.s146.2.7.7.80.10.50.1000.75.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  75  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9331375--9331556	43	4.3	42	77	9	181	46	10	14	29	1.77
9331375--9331556	85	2.1	86	83	4	233	46	10	14	29	1.77
9331646--9331748	34	3.2	33	81	10	115	54	12	15	17	1.71
9331576--9331749	65	2.7	65	80	3	197	51	13	18	17	1.77
9332063--9332110	17	2.8	17	80	3	51	47	14	10	27	1.76
9332741--9332809	22	3.1	22	77	4	75	44	8	8	37	1.66
9332733--9332904	81	2.1	81	79	6	188	47	10	7	34	1.66
9332886--9332945	21	2.7	22	82	7	77	51	16	3	28	1.60
9332995--9333107	44	2.6	44	84	2	147	43	12	12	31	1.80
9333025--9333101	22	3.5	22	67	13	59	45	10	11	32	1.75
9333087--9333121	14	2.5	14	90	0	52	40	17	8	34	1.80
9334426--9334458	11	3.1	11	86	8	50	0	18	0	81	0.68
9335112--9335150	13	3.0	13	85	10	53	2	10	2	84	0.81
9335976--9336281	132	2.3	131	81	7	375	46	11	12	29	1.76
9343541--9343590	20	2.4	21	80	3	66	40	6	16	38	1.73
9345104--9345147	20	2.2	20	92	4	72	13	6	22	56	1.61
9345247--9345276	15	2.0	15	100	0	60	46	20	6	26	1.75
9351505--9351744	132	1.8	133	88	2	367	38	10	9	41	1.72
9352500--9352627	64	2.0	64	96	0	238	33	14	9	42	1.78
9355717--9355817	50	2.0	51	94	1	177	38	19	6	34	1.79
9356090--9356129	21	2.0	20	90	5	62	45	12	10	32	1.75
9356089--9356137	20	2.4	21	79	3	64	42	16	10	30	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9369269--9369298	12	2.4	13	94	5	53	20	0	0	80	0.72
9369316--9369548	4	57.8	4	66	15	72	26	3	3	66	1.23
9369396--9369533	21	7.1	20	74	22	75	26	3	2	66	1.22
9369316--9369548	17	12.2	19	70	20	96	26	3	3	66	1.23
9369271--9369551	17	15.9	17	66	21	70	24	3	3	68	1.21
9369444--9369539	42	2.3	42	83	11	126	22	3	2	71	1.10
9369443--9369550	42	2.5	43	80	15	125	22	2	1	73	1.06
9369541--9369595	22	2.5	21	85	11	74	10	10	7	70	1.32
9370494--9370565	17	4.2	17	67	15	51	13	8	1	76	1.08
9370580--9370813	57	4.1	57	81	10	273	42	6	13	36	1.71
9370579--9370811	115	2.0	112	84	11	305	43	6	13	36	1.70
9370843--9370877	12	2.9	12	86	0	52	11	5	0	82	0.82
9374588--9374661	23	3.1	22	73	21	60	74	0	17	8	1.05
9374592--9374626	15	2.4	15	90	4	54	80	0	11	8	0.92
9374593--9374659	12	4.9	14	74	20	52	77	0	14	7	0.97
9375909--9376382	41	11.4	41	88	2	644	23	16	21	38	1.93
9375909--9376393	124	3.9	123	87	3	650	23	17	21	38	1.93
9375909--9376382	83	5.7	82	89	2	680	23	16	21	38	1.93
9376582--9376616	12	2.8	13	91	8	56	14	0	5	80	0.89
9376714--9376854	21	7.2	20	72	20	77	26	4	3	65	1.27
9376749--9376791	18	2.3	19	88	4	61	25	0	2	72	0.97
9376854--9376905	22	2.4	21	84	9	68	11	11	5	71	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9377759--9377881	4	31.0	4	70	26	61	20	2	2	74	1.04
9377764--9377873	14	7.1	15	69	23	68	19	2	2	75	1.05
9377817--9377882	9	8.0	8	76	17	55	15	1	1	81	0.83
9377759--9377882	36	3.2	38	74	18	107	20	2	2	75	1.04
9377805--9377917	47	2.4	47	80	10	115	15	6	1	76	1.07
9377917--9378075	59	2.8	58	82	9	200	48	5	13	32	1.66
9377983--9378171	95	2.0	97	84	8	253	47	4	14	33	1.65
9378036--9378113	38	2.1	38	97	0	147	48	2	19	29	1.62
9378069--9378179	58	1.9	58	87	8	165	46	5	13	34	1.66
9378198--9378243	18	2.6	17	80	12	58	13	10	0	76	1.03
9378204--9378245	12	3.4	12	86	3	57	11	9	0	78	0.96
9378210--9378239	6	5.0	6	91	0	51	16	3	0	80	0.85
9385534--9385590	28	2.2	24	75	21	62	40	0	1	57	1.09
9385709--9385755	19	2.3	20	85	10	60	46	0	6	46	1.28
9385824--9385999	61	2.9	60	79	11	180	39	5	15	39	1.71
9393824--9393871	19	2.5	19	80	12	62	25	10	18	45	1.81
9398906--9398987	9	9.1	9	73	12	55	75	0	10	13	1.04
9398910--9398955	23	2.0	23	82	4	56	80	0	8	10	0.91
9398909--9398999	20	4.4	19	75	19	76	75	0	13	10	1.04
9400116--9400202	22	4.0	22	89	5	133	33	8	17	41	1.78
9400127--9400196	23	3.1	23	91	4	124	31	7	17	44	1.75
9400444--9400486	21	2.0	21	100	0	86	32	9	18	39	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9400683--9400731	19	2.6	19	80	3	55	36	12	10	40	1.77
9400844--9401196	43	8.2	43	80	6	324	28	11	15	44	1.82
9400844--9401245	86	4.7	87	76	10	312	29	12	14	44	1.82
9401015--9401257	87	2.8	86	77	6	213	30	13	12	43	1.81
9402778--9402843	33	2.0	34	81	3	80	59	0	4	36	1.18
9404490--9404827	186	1.8	184	81	8	427	34	9	7	48	1.64
9407244--9407406	77	2.1	77	98	1	317	41	0	7	50	1.30
9408239--9408425	73	2.6	71	78	9	184	28	22	17	31	1.97
9415726--9415769	21	2.1	21	83	8	54	27	4	4	63	1.33
9415942--9416008	12	5.8	11	75	15	55	14	7	1	76	1.08
9415944--9416005	21	2.9	19	75	17	52	14	6	1	77	1.04
9416187--9416230	3	14.7	3	100	0	88	34	0	0	65	0.93
9417422--9417462	17	2.4	17	84	8	57	7	2	7	82	0.91
9417507--9417539	17	1.9	17	93	0	57	72	0	6	21	1.05
9417863--9418001	51	2.7	52	86	8	203	38	19	15	25	1.91
9418272--9418332	23	2.7	23	84	0	68	29	11	24	34	1.91
9418413--9418499	22	3.7	22	72	14	66	20	21	27	29	1.98
9420071--9420114	22	2.0	23	86	4	63	13	15	9	61	1.56
9426960--9426989	10	3.0	10	100	0	60	40	0	10	50	1.36
9427357--9427399	22	2.1	20	83	12	52	23	2	2	72	1.08
9427576--9427618	13	3.2	13	84	12	52	18	4	0	76	0.95
9427810--9427893	3	28.0	3	100	0	168	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9429186--9429222	6	6.2	6	100	0	74	83	0	0	16	0.64
9431335--9431386	13	4.2	12	80	11	52	80	1	5	11	0.96
9431335--9431386	24	2.1	25	86	10	72	80	1	5	11	0.96
9431310--9431386	37	2.1	37	81	13	88	76	3	5	14	1.10
9431346--9431387	19	2.2	19	87	8	59	80	0	7	11	0.88
9432251--9432320	3	24.3	3	75	13	67	61	1	2	34	1.20
9432252--9432300	26	1.9	25	88	12	73	65	2	0	32	1.04
9432252--9432359	15	7.5	14	75	15	78	56	4	2	36	1.34
9432244--9432359	29	4.0	29	79	11	96	57	4	2	35	1.32
9432315--9432358	13	3.5	12	84	3	52	50	9	2	38	1.47
9432792--9433060	119	2.3	116	76	3	252	47	14	18	19	1.82
9439138--9439186	25	2.0	25	91	0	80	22	10	10	57	1.62
9442969--9443052	37	2.3	37	83	6	100	59	7	14	19	1.57
9443927--9443965	21	1.9	20	89	5	60	76	5	0	17	0.96
9443927--9443987	25	2.4	25	81	7	70	75	4	1	18	1.06
9443927--9443987	26	2.5	23	79	12	59	75	4	1	18	1.06
9444226--9444278	18	2.8	19	82	5	63	30	11	18	39	1.86
9444308--9444351	20	2.2	20	87	0	61	45	27	4	22	1.72
9444773--9444816	16	2.7	16	78	3	52	75	4	20	0	0.98
9444822--9444856	6	5.8	6	93	0	61	68	0	2	28	1.04
9444853--9444913	3	21.3	3	77	9	65	60	1	3	34	1.23
9444857--9444898	8	5.1	8	88	5	66	64	2	0	33	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9444850--9444898	11	4.5	11	79	20	59	65	2	0	32	1.04
9445548--9445582	18	1.9	18	94	0	61	40	8	8	42	1.66
9445710--9446127	152	2.8	151	84	4	538	41	6	13	38	1.71
9458550--9458593	13	3.3	13	81	6	52	45	0	25	29	1.54
9459104--9459157	18	3.0	19	78	10	60	48	0	0	51	1.00
9459537--9459592	29	2.0	28	86	10	78	42	1	3	51	1.29
9462700--9462741	2	21.0	2	95	0	75	0	52	0	47	1.00
9463953--9463979	2	13.5	2	100	0	54	0	51	0	48	1.00
9483840--9483890	12	4.1	12	82	17	52	35	0	0	64	0.94
9483852--9483891	6	6.7	6	88	11	64	32	0	0	67	0.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120