genome.fa.s146.2.7.7.80.10.50.1000.57.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  57  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6617494--6617572	26	3.0	26	100	0	158	26	26	20	26	1.99
6620195--6620248	26	2.1	26	86	6	74	31	22	14	31	1.94
6622765--6622814	26	1.9	26	91	0	82	24	26	18	32	1.97
6624234--6624425	95	2.0	96	95	2	350	26	31	20	21	1.98
6625358--6625408	26	2.0	26	92	0	84	21	31	19	27	1.97
6624850--6635048	894	11.5	896	84	5	12219	25	24	23	25	2.00
6628037--6628089	26	2.0	26	92	0	88	28	24	18	28	1.98
6629781--6629833	26	2.0	26	100	0	106	26	26	20	26	1.99
6630672--6630724	26	2.0	26	96	0	97	26	24	20	28	1.99
6628907--6635048	875	6.9	889	84	5	7458	25	24	23	25	2.00
6634216--6634268	26	2.0	26	88	0	79	30	18	18	32	1.96
6636487--6637772	181	7.1	179	77	7	1068	42	9	8	39	1.68
6637805--6639845	181	11.3	179	74	7	1382	41	9	7	41	1.66
6637805--6639845	360	5.7	358	75	7	1350	41	9	7	41	1.66
6638621--6639844	540	2.3	539	79	5	1291	41	10	7	40	1.68
6639857--6641768	180	10.4	178	71	11	942	42	8	8	40	1.66
6639859--6640915	361	2.9	356	78	7	993	41	8	8	41	1.65
6642270--6642687	177	2.3	179	78	9	449	40	10	8	40	1.70
6642693--6642739	21	2.3	20	85	7	67	29	8	12	48	1.71
6642704--6642747	21	2.1	21	100	0	88	31	9	13	45	1.75
6642732--6647703	181	28.1	176	72	13	1139	42	9	8	40	1.66
6643010--6643062	18	3.1	18	74	17	58	37	7	7	47	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6643545--6647688	181	23.3	178	74	9	2725	41	9	8	40	1.66
6645374--6647688	361	6.5	358	77	7	1826	41	9	8	40	1.68
6647955--6648593	340	1.9	340	81	4	788	40	7	10	41	1.67
6648273--6648617	181	1.9	181	79	3	390	39	8	8	43	1.66
6650152--6650311	40	4.2	40	63	23	108	45	3	2	49	1.31
6650177--6650218	17	2.3	18	92	8	68	42	0	0	57	0.99
6650139--6650367	114	2.0	114	96	1	424	46	3	2	47	1.33
6650239--6650286	25	2.0	24	84	12	62	45	4	2	47	1.33
6650291--6650327	17	2.1	18	95	5	67	45	0	0	54	1.00
6650297--6650334	17	2.2	17	90	0	58	42	2	0	55	1.14
6650817--6650875	25	2.3	26	80	16	70	47	1	1	49	1.21
6650832--6650883	17	2.8	19	72	21	56	48	1	1	48	1.24
6651152--6651179	14	2.0	14	100	0	56	50	0	7	42	1.30
6651877--6651917	21	2.0	20	86	13	57	53	0	0	46	1.00
6651851--6651916	35	1.9	33	82	11	80	50	3	0	46	1.16
6652110--6652143	11	3.1	11	86	0	50	52	0	0	47	1.00
6652740--6652789	18	3.1	16	85	8	57	50	0	0	50	1.00
6652746--6652789	9	4.8	9	81	15	54	50	0	0	50	1.00
6652743--6652839	48	2.0	49	82	11	119	46	1	1	51	1.14
6652922--6652972	19	2.8	18	75	13	50	41	0	1	56	1.10
6654942--6654998	18	3.1	18	82	5	60	47	1	1	49	1.22
6654969--6655017	16	3.0	16	81	3	62	53	0	2	44	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6655046--6655085	19	2.0	20	95	4	73	42	5	0	52	1.23
6655080--6655798	181	4.0	181	76	7	631	43	9	7	39	1.65
6655097--6655798	360	1.9	361	81	4	824	43	9	7	39	1.65
6656281--6657353	180	5.9	179	75	11	835	40	7	9	42	1.67
6658429--6658487	19	3.1	19	78	4	64	47	0	0	52	1.00
6659186--6659243	22	2.6	22	81	8	64	48	3	0	48	1.18
6659196--6659238	18	2.6	17	82	14	54	46	2	0	51	1.13
6659335--6659386	26	2.0	25	88	3	77	46	0	0	53	1.00
6659342--6659389	14	3.6	14	78	18	57	47	0	0	52	1.00
6659538--6659583	24	1.9	24	86	0	65	36	4	2	56	1.31
6659669--6660788	181	6.2	181	77	5	976	41	10	8	40	1.69
6660490--6661066	299	1.9	300	84	2	766	41	9	8	40	1.68
6660932--6661212	145	1.9	146	86	2	404	42	8	7	41	1.63
6661077--6661566	181	2.7	177	81	6	515	39	9	9	41	1.70
6661549--6661577	13	2.2	13	100	0	58	58	6	0	34	1.25
6662486--6662553	8	8.5	8	72	18	52	45	2	0	51	1.16
6662503--6662570	25	2.6	27	81	6	77	45	1	2	50	1.26
6662883--6662921	19	2.1	18	90	4	60	43	0	0	56	0.99
6662886--6662939	19	2.7	19	77	13	56	48	1	0	50	1.11
6663272--6663335	17	3.4	19	77	16	62	50	0	0	50	1.00
6663288--6663324	14	2.7	14	84	15	51	54	0	0	45	1.00
6663537--6663586	19	2.6	19	81	9	57	40	0	4	56	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6664405--6665220	361	2.3	360	82	4	957	41	9	9	40	1.69
6664097--6665220	180	6.3	179	79	6	1062	41	8	9	40	1.68
6668093--6668133	20	2.1	19	86	13	57	63	0	0	36	0.95
6668199--6668257	29	2.0	30	80	9	68	47	1	1	49	1.21
6668317--6668388	35	2.1	34	84	2	90	50	0	1	48	1.09
6668848--6668905	12	4.8	12	77	14	50	55	1	0	43	1.10
6668831--6668909	7	11.3	7	70	22	51	55	1	1	41	1.16
6671973--6672034	25	2.4	28	79	17	80	48	3	1	46	1.28
6672447--6672493	18	2.6	18	77	9	51	59	0	0	40	0.97
6672627--6672701	14	5.6	13	73	16	64	42	1	2	53	1.23
6672660--6672740	10	8.1	10	70	23	55	48	2	1	48	1.23
6672820--6672857	14	2.7	14	76	15	51	50	0	2	47	1.15
6673052--6673118	24	3.0	23	82	14	86	47	0	2	49	1.16
6673354--6673424	24	3.0	24	76	12	65	57	1	0	40	1.07
6673391--6673441	24	2.0	26	82	14	63	54	0	1	43	1.11
6673436--6673499	16	3.8	18	78	11	66	43	0	1	54	1.09
6673410--6673521	59	1.9	59	80	7	129	47	0	2	50	1.15
6673429--6673517	30	2.9	32	79	15	82	46	0	1	52	1.07
6673514--6674006	179	2.7	179	76	12	450	39	7	10	42	1.68
6675295--6675400	38	2.8	38	76	19	98	50	2	0	46	1.22
6675466--6675516	21	2.5	20	81	9	57	50	1	1	45	1.24
6675914--6675952	20	1.9	21	89	5	62	38	2	2	56	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6676762--6677180	181	2.3	182	80	2	450	40	10	8	40	1.70
6678066--6678117	16	3.3	15	87	12	70	48	1	0	50	1.12
6678403--6678435	18	1.9	17	88	11	50	36	6	9	48	1.60
6678584--6678631	25	1.9	25	83	8	62	45	0	4	50	1.21
6678978--6679011	11	3.2	11	95	4	61	44	0	0	55	0.99
6679132--6679162	15	2.0	16	93	6	55	35	0	0	64	0.94
6679197--6679226	15	2.1	14	93	6	51	73	0	0	26	0.84
6679432--6679502	3	21.7	3	72	16	52	54	2	0	42	1.14
6679432--6679487	19	2.8	19	78	10	67	57	3	0	39	1.16
6679436--6679502	16	3.8	17	78	18	75	53	2	0	43	1.16
6679616--6679656	19	2.2	19	86	0	55	48	4	0	46	1.23
6682062--6682110	13	3.2	15	80	19	57	48	0	0	51	1.00
6682064--6682138	32	2.3	33	86	8	102	50	0	0	49	1.00
6682023--6682150	34	4.0	30	72	21	93	48	1	1	48	1.20
6682322--6682359	20	1.9	20	94	0	67	47	2	0	50	1.15
6682649--6682689	15	2.6	16	92	3	66	53	2	0	43	1.13
6682913--6682986	6	12.0	6	79	12	62	51	1	0	47	1.09
6682913--6682980	25	2.8	26	78	10	65	51	1	0	47	1.09
6682908--6682989	13	6.5	13	76	13	82	51	1	0	47	1.08
6682835--6682990	12	13.1	12	73	14	78	51	1	1	46	1.17
6682876--6682996	13	10.1	13	74	21	56	52	0	1	45	1.16
6682968--6683002	18	2.0	17	88	5	52	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6683543--6683648	20	5.3	20	68	26	64	48	1	2	47	1.27
6683868--6684869	360	2.8	362	79	5	939	42	10	8	39	1.68
6683849--6684793	182	5.2	180	77	7	774	42	9	8	39	1.68
6685366--6685824	180	2.5	181	80	3	478	42	9	8	38	1.68
6685820--6689290	181	19.4	180	75	7	2394	41	9	8	40	1.68
6685820--6689220	537	6.3	537	76	9	2506	41	9	8	40	1.68
6685821--6689290	718	4.8	717	76	8	2809	41	9	8	40	1.68
6694358--6694419	21	2.8	21	75	13	54	17	6	3	72	1.19
6694364--6694414	23	2.3	22	86	10	68	17	3	1	76	1.03
6696375--6696407	10	3.2	10	91	8	57	12	0	0	87	0.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120