genome.fa.s146.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  12  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1306472--1306524	26	2.0	26	96	0	97	30	24	16	28	1.97
1306066--1306872	356	2.3	355	84	3	1007	19	27	28	24	1.98
1308081--1308133	26	2.0	26	88	0	79	30	28	16	24	1.97
1307911--1308282	196	1.9	196	80	3	435	22	28	27	21	1.99
1308435--1308512	26	3.0	26	98	0	147	26	25	20	26	1.99
1308806--1309008	45	4.5	44	78	2	163	20	31	32	16	1.94
1308806--1309008	90	2.3	90	82	5	232	20	31	32	16	1.94
1309962--1310012	26	2.0	26	84	0	66	29	29	15	25	1.96
1310304--1310356	26	2.0	26	92	0	88	30	24	16	28	1.97
1310809--1310952	45	3.2	45	83	0	198	20	32	27	18	1.96
1311906--1311958	26	2.0	26	85	7	72	30	26	18	24	1.98
1312260--1312307	25	1.9	25	91	0	78	27	27	18	27	1.98
1312760--1312934	45	3.9	46	77	4	169	21	30	30	17	1.96
1312761--1312934	89	1.9	90	82	5	219	21	30	31	17	1.96
1314219--1314271	26	2.0	26	92	0	88	24	24	20	30	1.99
1314693--1314847	45	3.4	45	77	7	134	18	28	32	20	1.96
1318813--1318865	26	2.0	26	85	0	70	28	26	16	28	1.97
1319168--1319220	26	2.0	26	88	0	79	30	24	16	28	1.97
1319661--1319820	45	3.6	45	79	0	158	20	31	31	16	1.95
1320761--1320813	26	2.0	26	88	0	79	28	22	16	32	1.96
1321451--1321693	45	5.4	45	74	4	177	18	27	32	20	1.96
1321451--1321696	90	2.7	90	79	3	244	18	27	32	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1322570--1322622	26	2.0	26	96	0	97	28	26	18	26	1.98
1323094--1323234	45	3.1	45	82	0	174	20	33	31	14	1.93
1323261--1323768	136	3.7	136	81	2	565	20	28	27	23	1.99
1323301--1323793	272	1.8	272	83	2	659	20	27	26	24	1.99
1324736--1324895	45	3.6	45	80	0	167	18	30	33	18	1.95
1324738--1324901	90	1.8	90	82	0	211	17	30	33	18	1.94
1334976--1335013	13	2.9	13	96	0	67	23	39	15	21	1.92
1336648--1336838	45	4.2	45	80	1	186	21	29	30	18	1.97
1336650--1336839	90	2.1	90	81	1	211	21	28	31	18	1.97
1337721--1337773	26	2.0	26	85	7	72	30	24	20	24	1.99
1338076--1338128	26	2.0	26	92	0	88	26	22	20	30	1.98
1339940--1339992	26	2.0	26	100	0	106	26	26	16	30	1.97
1340406--1340562	45	3.5	44	78	3	170	19	29	33	17	1.95
1340605--1340629	13	1.9	13	100	0	50	24	36	16	24	1.94
1341336--1341489	45	3.4	45	80	1	175	20	29	31	18	1.96
1341532--1341556	13	1.9	13	100	0	50	24	36	16	24	1.94
1342560--1342661	44	2.3	44	81	8	118	18	28	34	18	1.95
1343503--1343555	26	2.0	26	92	0	88	26	26	20	26	1.99
1343837--1343889	26	2.0	26	88	0	79	26	20	20	32	1.98
1344321--1344488	45	3.7	45	74	5	160	20	30	31	17	1.95
1345305--1345357	26	2.0	26	88	0	79	24	26	22	26	2.00
1345687--1345864	90	2.0	89	80	1	203	21	29	29	19	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1347367--1347482	44	2.6	44	80	1	115	21	30	28	19	1.98
1348465--1348517	26	2.0	26	92	0	88	26	26	20	26	1.99
1348820--1348898	26	3.0	26	86	0	113	26	27	17	27	1.98
1349353--1349508	45	3.5	45	72	0	141	21	30	29	18	1.97
1350042--1350251	45	4.7	45	77	2	215	18	30	34	17	1.94
1350062--1350247	90	2.1	90	86	0	264	18	30	33	17	1.94
1351140--1351192	26	2.0	26	92	0	88	28	28	18	24	1.98
1350985--1351346	196	1.8	196	82	2	458	21	26	28	22	1.99
1351998--1352158	45	3.6	45	78	0	160	21	29	30	18	1.97
1353099--1353151	26	2.0	26	96	0	97	26	24	20	28	1.99
1353410--1353462	26	2.0	26	96	0	97	28	26	18	26	1.98
1353889--1354090	45	4.5	45	73	9	128	19	28	32	18	1.96
1353889--1354090	90	2.3	90	85	2	255	19	28	32	18	1.96
1356027--1356077	26	2.0	26	96	0	93	31	21	17	29	1.96
1356222--1356274	26	2.0	26	88	0	79	26	28	20	24	1.99
1355870--1356445	197	2.9	195	80	3	656	22	26	28	22	1.99
1356577--1356629	26	2.0	26	92	0	88	28	24	18	28	1.98
1357046--1357214	45	3.8	45	77	0	176	20	31	32	15	1.94
1358467--1358516	26	1.9	26	95	0	91	26	26	20	28	1.99
1358960--1359116	45	3.5	45	73	5	147	19	30	31	17	1.95
1359382--1359411	12	2.5	12	100	0	60	13	46	20	20	1.83
1360059--1360111	26	2.0	26	92	0	88	28	28	18	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1360135--1360428	158	1.9	157	82	5	369	18	28	29	23	1.97
1360401--1360453	26	2.0	26	89	7	81	30	24	16	28	1.97
1360890--1361083	45	4.3	45	77	0	181	20	29	31	18	1.96
1360893--1361083	90	2.1	90	80	3	206	19	29	31	18	1.96
1362427--1362616	45	4.2	45	77	2	150	21	33	30	15	1.94
1362447--1362641	90	2.2	90	80	1	212	20	32	30	17	1.95
1362447--1362641	45	4.3	46	75	8	168	20	32	30	17	1.95
1363576--1363625	26	1.9	26	92	8	84	26	26	20	28	1.99
1363896--1363948	26	2.0	26	88	0	79	24	22	22	30	1.99
1364291--1364315	13	1.9	13	100	0	50	24	36	16	24	1.94
1366133--1366185	26	2.0	26	89	7	81	26	26	18	28	1.98
1365963--1366541	197	2.9	194	82	4	637	21	27	28	21	1.99
1366330--1366382	26	2.0	26	92	7	90	26	26	20	26	1.99
1368479--1368534	26	2.2	26	86	0	76	30	19	17	32	1.95
1368237--1369146	486	1.9	486	84	3	1222	20	27	27	24	1.99
1368751--1369466	321	2.2	318	84	2	916	21	28	25	24	1.99
1371109--1371314	45	4.6	45	77	2	198	19	32	31	16	1.94
1371112--1371314	90	2.3	90	85	0	271	19	32	31	16	1.94
1372071--1372372	162	1.9	162	84	2	410	21	26	29	22	1.99
1372318--1372604	159	1.8	160	83	7	370	19	31	26	22	1.97
1372576--1372628	26	2.0	26	85	0	70	28	22	18	30	1.98
1373111--1373286	45	3.9	45	76	1	138	19	30	32	17	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1373694--1373895	45	4.5	45	82	2	190	18	30	30	20	1.96
1374835--1374887	26	2.0	26	96	0	97	26	28	20	24	1.99
1375365--1375417	26	2.0	26	92	0	88	30	26	16	26	1.97
1375141--1375554	174	2.4	173	84	2	524	22	27	24	24	2.00
1375917--1376033	45	2.6	45	80	0	144	18	26	27	27	1.98
1375867--1376067	45	4.5	45	75	5	129	19	30	27	21	1.98
1376117--1376141	13	1.9	13	100	0	50	24	36	16	24	1.94
1377345--1377397	26	2.0	26	92	0	88	24	24	20	30	1.99
1377850--1378088	45	5.4	45	76	5	191	20	30	31	17	1.96
1378094--1378118	13	1.9	13	100	0	50	24	24	16	36	1.94
1378967--1379019	26	2.0	26	92	0	88	30	26	16	26	1.97
1379323--1379375	26	2.0	26	96	0	97	26	24	20	28	1.99
1381311--1381604	159	1.8	159	80	0	354	18	26	30	23	1.98
1381921--1381973	26	2.0	26	96	0	97	26	24	20	28	1.99
1381335--1382099	332	2.3	333	82	3	889	19	27	29	24	1.98
1382435--1382539	45	2.3	45	81	0	129	20	29	30	20	1.97
1383431--1383483	26	2.0	26	89	7	81	26	24	20	28	1.99
1383786--1383838	26	2.0	26	92	0	88	28	20	20	30	1.98
1388863--1388987	45	2.8	45	85	4	119	24	32	26	16	1.96
1388883--1389032	45	3.3	45	80	10	155	24	32	26	16	1.96
1390370--1390496	45	2.8	45	78	1	137	16	35	29	18	1.93
1391128--1391491	195	1.9	196	80	5	441	23	29	25	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1392288--1392471	45	4.1	44	72	4	127	20	30	28	20	1.97
1392263--1392436	90	1.9	90	83	2	224	20	32	27	20	1.97
1392264--1392471	90	2.3	90	78	3	195	20	30	28	20	1.98
1393115--1393166	25	2.0	26	85	3	70	26	15	26	30	1.96
1394109--1394217	45	2.4	45	93	0	191	14	35	33	16	1.89
1394756--1394835	24	3.3	24	91	1	124	13	38	27	20	1.90
1395614--1395801	45	4.2	44	73	5	153	18	28	30	22	1.97
1395567--1395761	90	2.2	90	80	6	216	17	29	28	24	1.97
1395611--1395784	90	1.9	90	82	4	217	16	28	32	23	1.96
1396086--1396138	26	2.0	26	89	7	81	26	16	24	32	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120