genome.fa.s146.2.7.7.80.10.50.1000.51.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  51  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5854120--5854172	26	2.0	26	96	0	97	26	24	20	28	1.99
5855012--5855064	26	2.0	26	88	0	79	30	24	16	28	1.97
5853926--5857409	892	3.9	890	87	3	4764	26	24	24	25	2.00
5855907--5855959	26	2.0	26	92	0	88	26	22	20	30	1.98
5856559--5856856	158	1.9	161	80	5	354	19	30	27	22	1.98
5858515--5858582	31	2.2	31	100	0	136	32	20	8	38	1.84
5859268--5859319	26	2.0	26	96	0	95	28	26	17	26	1.97
5858644--5864810	900	6.9	899	85	3	7690	26	24	23	25	2.00
5862839--5862891	26	2.0	26	88	0	79	28	22	18	30	1.98
5864652--5864704	26	2.0	26	92	0	88	28	24	18	28	1.98
5865293--5865586	58	5.0	57	87	6	410	34	13	7	44	1.72
5865293--5865583	117	2.5	117	88	5	426	34	13	7	44	1.73
5865594--5865651	14	4.2	14	76	8	57	79	1	5	13	0.98
5865601--5865651	17	2.9	17	80	11	59	80	1	3	13	0.94
5865638--5865677	17	2.4	16	84	8	53	72	0	5	22	1.04
5865686--5865730	4	10.8	4	81	9	54	75	2	2	20	1.01
5866073--5866112	21	2.0	21	85	5	55	15	22	25	37	1.93
5866073--5866120	20	2.5	20	80	12	55	18	25	25	31	1.98
5866111--5866147	11	3.4	11	88	0	56	27	27	24	21	1.99
5868186--5868237	27	1.9	27	96	0	95	30	23	19	26	1.98
5869876--5869928	26	2.0	26	100	0	106	26	26	20	26	1.99
5869277--5871858	928	2.9	895	83	7	3300	26	24	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5871699--5871751	26	2.0	26	92	0	88	28	24	18	28	1.98
5872337--5872630	58	5.0	57	86	6	401	34	13	7	44	1.72
5872339--5872627	117	2.5	117	88	5	413	34	13	7	44	1.72
5872638--5872691	14	3.9	14	78	9	56	77	1	5	14	1.03
5872727--5872771	4	10.8	4	81	9	54	75	2	2	20	1.01
5873116--5873164	20	2.5	20	89	0	71	18	22	24	34	1.96
5873155--5873187	11	3.0	11	90	0	57	30	27	24	18	1.98
5873730--5873777	25	2.0	24	83	4	60	66	6	4	22	1.32
5873781--5873845	17	3.8	17	76	21	57	63	3	1	32	1.19
5873857--5873918	27	2.2	27	80	11	72	69	3	1	25	1.13
5874111--5874171	21	3.0	19	82	17	70	3	3	9	83	0.87
5874124--5874171	14	3.4	14	83	16	64	0	2	10	87	0.62
5874117--5874171	12	4.5	12	80	10	58	1	1	9	87	0.70
5874178--5874516	41	8.1	41	89	4	502	35	24	16	23	1.95
5874178--5874516	83	4.1	83	94	1	563	35	24	16	23	1.95
5874178--5874516	124	2.7	124	90	4	538	35	24	16	23	1.95
5875766--5875808	17	2.5	17	88	0	59	4	18	0	76	0.95
5875763--5875850	7	12.0	7	71	19	56	4	19	0	76	0.96
5875779--5875820	10	4.1	10	90	6	66	0	14	0	85	0.59
5875787--5875820	11	3.2	11	83	8	52	0	11	0	88	0.52
5875762--5875846	44	1.9	44	83	4	109	4	18	0	76	0.96
5879702--5879996	58	5.0	59	86	4	425	33	12	8	45	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5879702--5879993	118	2.5	117	90	3	442	33	12	8	45	1.71
5880004--5880056	14	3.8	14	78	7	54	77	1	7	13	1.06
5881045--5881188	4	36.8	4	68	20	58	66	2	2	28	1.17
5881028--5881197	93	1.9	93	82	16	223	66	4	2	27	1.22
5882004--5882043	20	2.0	20	90	0	62	5	40	35	20	1.74
5882074--5882126	26	2.0	26	96	0	97	28	26	18	26	1.98
5882168--5882222	26	2.1	26	96	0	101	10	27	41	20	1.85
5885684--5885736	26	2.0	26	92	0	88	28	22	20	28	1.99
5887256--5887281	8	3.2	8	100	0	52	0	61	26	11	1.30
5887459--5887511	26	2.0	26	92	0	88	30	24	16	28	1.97
5888359--5888411	26	2.0	26	92	7	90	26	22	22	28	1.99
5886578--5890849	900	4.8	899	85	4	5519	26	24	23	25	2.00
5888585--5888615	12	2.6	12	100	0	62	19	29	19	32	1.96
5889259--5889311	26	2.0	26	96	0	97	28	26	18	26	1.98
5890137--5890189	26	2.0	26	92	0	88	24	24	22	28	2.00
5891220--5891272	26	2.0	26	92	0	88	24	24	20	30	1.99
5892115--5892167	26	2.0	26	96	0	97	28	26	18	26	1.98
5891614--5892712	571	1.9	571	90	0	1759	27	25	22	24	2.00
5894252--5894304	26	2.0	26	92	0	88	28	24	18	28	1.98
5896024--5896076	26	2.0	26	88	0	79	28	22	18	30	1.98
5898660--5898712	26	2.0	26	89	7	81	28	22	20	28	1.99
5899564--5899614	26	2.0	26	96	0	93	25	25	15	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5893497--5906566	898	14.7	885	85	5	15850	25	25	24	25	2.00
5902229--5902281	26	2.0	26	96	0	97	28	26	18	26	1.98
5903995--5904047	26	2.0	26	92	0	88	30	26	16	26	1.97
5905816--5907194	699	2.0	701	89	2	2114	27	23	22	26	1.99
5907391--5907443	26	2.0	26	96	0	97	28	26	18	26	1.98
5906517--5909058	887	2.8	883	86	3	3423	26	24	23	25	2.00
5908311--5909771	713	2.1	710	88	0	2141	27	23	23	26	2.00
5909886--5909938	26	2.0	26	92	0	88	26	26	18	28	1.98
5910007--5910045	14	2.8	14	84	0	51	23	38	28	10	1.87
5909021--5913474	907	5.0	898	82	8	5261	25	25	24	25	2.00
5913422--5913500	26	3.0	26	90	0	131	25	27	20	26	1.99
5914603--5914655	26	2.0	26	96	0	97	28	26	18	26	1.98
5915498--5915549	26	2.0	25	92	3	86	26	26	17	28	1.97
5915630--5915662	11	3.0	11	100	0	66	18	27	36	18	1.94
5916406--5916458	26	2.0	26	92	0	88	28	24	18	28	1.98
5913634--5916650	899	3.4	896	86	2	4110	24	24	25	25	2.00
5916664--5919114	895	2.8	868	85	6	3065	25	24	24	24	2.00
5918402--5918455	26	2.1	26	96	0	99	24	20	24	31	1.98
5919974--5920026	26	2.0	26	96	0	97	26	20	20	32	1.98
5920864--5920919	26	2.2	26	96	0	103	30	25	17	26	1.97
5919298--5923419	890	4.6	887	84	5	5182	26	25	23	25	2.00
5921752--5921804	26	2.0	26	100	0	106	26	26	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5922648--5924063	718	2.0	718	90	1	2255	26	23	23	25	2.00
5924262--5924314	26	2.0	26	92	0	88	28	24	20	26	1.99
5924374--5924449	40	1.9	40	94	0	134	19	31	19	28	1.97
5925194--5925246	26	2.0	26	96	0	97	28	26	18	26	1.98
5923390--5931083	880	8.6	890	82	7	8686	25	24	23	25	2.00
5926973--5927024	27	2.0	27	88	3	79	30	25	15	28	1.96
5927864--5927916	26	2.0	26	96	0	97	28	26	18	26	1.98
5928745--5928796	26	2.0	26	96	0	95	30	25	17	26	1.97
5929796--5929820	11	2.3	11	100	0	50	20	28	32	20	1.97
5931254--5931332	26	3.0	26	94	0	140	27	24	18	29	1.98
5932644--5932722	26	3.0	26	94	0	140	27	24	18	29	1.98
5932997--5933322	175	1.9	176	93	1	566	28	26	21	23	1.99
5933532--5933610	26	3.0	26	87	7	115	27	22	17	31	1.97
5934236--5934288	26	2.0	26	92	0	88	28	28	16	26	1.97
5935116--5935168	26	2.0	26	88	0	79	28	22	20	28	1.99
5936021--5936073	26	2.0	26	96	0	97	26	24	22	26	2.00
5936925--5937003	26	3.0	26	85	7	115	30	24	16	29	1.96
5935116--5938785	929	4.0	923	82	7	4397	25	25	23	25	2.00
5938734--5938784	26	2.0	26	92	0	84	29	27	15	27	1.96
5939445--5939497	26	2.0	26	92	0	88	26	22	24	26	2.00
5938243--5939652	720	2.0	711	86	4	1942	24	24	26	24	2.00
5940333--5940383	25	2.0	25	85	7	68	31	25	17	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5942102--5942151	26	1.9	26	100	0	100	28	26	16	30	1.96
5938964--5976782	869	41.9	879	71	14	17466	25	25	24	25	2.00
5944761--5944812	26	2.0	26	96	0	95	26	25	19	28	1.98
5946462--5946514	26	2.0	26	100	0	106	26	26	20	26	1.99
5938964--5950885	867	13.6	862	79	9	10926	25	25	24	25	2.00
5948232--5948284	26	2.0	26	96	0	97	28	24	20	26	1.99
5949067--5949145	26	3.0	26	94	0	131	29	24	20	26	1.99
5942127--5950885	889	10.0	869	77	10	5016	25	25	24	25	2.00
5950859--5950911	26	2.0	26	96	0	97	26	24	20	28	1.99
5952804--5952856	26	2.0	26	96	0	97	26	24	20	28	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120