genome.fa.s146.2.7.7.80.10.50.1000.44.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  44  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4997622--4997674	26	2.0	26	92	0	88	26	16	26	30	1.97
4998520--4998572	26	2.0	26	100	0	106	26	20	26	26	1.99
5001051--5001100	26	1.9	26	100	0	100	28	22	26	24	1.99
5003647--5003699	26	2.0	26	92	0	88	32	15	20	32	1.93
5002148--5006417	896	4.8	896	85	4	5384	25	23	24	26	2.00
5004544--5004595	26	2.0	26	96	0	95	28	19	26	25	1.98
5005437--5005489	26	2.0	26	92	0	88	26	16	26	30	1.97
5006346--5006398	26	2.0	26	100	0	106	26	20	26	26	1.99
5007085--5007136	26	2.0	26	92	0	86	26	19	25	28	1.98
5006372--5009852	899	3.9	897	88	2	4854	25	23	24	25	2.00
5008884--5008936	26	2.0	26	92	0	88	26	20	24	28	1.99
5009776--5009828	26	2.0	26	96	0	97	28	20	24	26	1.99
5010481--5010532	26	2.0	26	88	0	77	28	19	23	28	1.98
5009802--5012269	864	2.9	838	83	6	2875	25	23	24	26	2.00
5012942--5012994	26	2.0	26	96	0	97	26	18	26	28	1.98
5014245--5014297	26	2.0	26	88	0	79	30	22	22	24	1.99
5015128--5015180	26	2.0	26	88	0	79	26	18	26	28	1.98
5013610--5017701	877	4.6	891	84	5	5129	25	23	24	26	2.00
5016905--5016954	26	1.9	26	92	8	84	32	18	22	28	1.97
5019896--5019979	26	3.3	25	84	12	109	26	25	21	27	1.99
5020820--5020872	26	2.0	26	100	0	106	26	26	20	26	1.99
5021705--5021754	26	1.9	26	95	0	91	26	28	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5018818--5025304	920	7.2	891	82	7	6162	25	25	24	25	2.00
5024358--5024410	26	2.0	26	100	0	106	26	26	20	26	1.99
5025739--5025791	26	2.0	26	100	0	106	26	26	20	26	1.99
5027414--5027466	26	2.0	26	81	0	61	28	22	18	30	1.98
5029197--5029249	26	2.0	26	100	0	106	26	26	20	26	1.99
5027223--5029530	884	2.6	879	80	7	2730	25	24	25	25	2.00
5030004--5030054	26	2.0	26	92	0	84	27	27	13	31	1.94
5030894--5030946	26	2.0	26	100	0	106	26	26	20	26	1.99
5029531--5031581	881	2.3	887	88	3	2996	26	24	23	25	2.00
5032383--5032461	26	3.0	26	98	0	149	27	26	18	26	1.98
5035321--5035376	26	2.2	26	96	0	103	30	25	17	26	1.97
5036061--5036111	26	2.0	26	92	0	84	31	25	15	27	1.96
5035326--5036736	718	1.9	726	89	2	2199	27	23	22	26	1.99
5036929--5036979	26	2.0	26	96	0	93	27	23	19	29	1.98
5037060--5037092	11	3.0	11	100	0	66	18	27	36	18	1.94
5036036--5038756	898	3.1	892	86	5	3749	25	24	24	25	2.00
5041542--5041602	26	2.4	26	91	5	99	31	22	18	27	1.97
5043137--5043189	26	2.0	26	92	0	88	28	28	18	24	1.98
5045835--5045885	26	2.0	26	96	0	93	27	23	19	29	1.98
5047568--5047620	26	2.0	26	96	0	97	28	26	18	26	1.98
5048306--5048355	26	1.9	26	87	0	73	24	24	22	30	1.99
5048665--5048724	26	2.4	26	80	5	79	30	26	16	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5050458--5050510	26	2.0	26	100	0	106	26	26	20	26	1.99
5051362--5051412	26	2.0	26	88	0	75	27	19	25	27	1.99
5053137--5053189	26	2.0	26	88	0	79	26	24	20	28	1.99
5042042--5056610	900	16.1	896	76	10	11618	25	24	24	25	2.00
5054037--5054089	26	2.0	26	92	0	88	28	24	18	28	1.98
5054927--5054984	26	2.2	26	79	11	73	27	24	20	27	1.99
5055631--5055657	4	6.8	4	100	0	54	0	74	25	0	0.83
5055842--5055894	26	2.0	26	96	0	97	28	26	18	26	1.98
5057439--5057491	26	2.0	26	96	0	97	26	24	20	28	1.99
5058179--5058231	26	2.0	26	85	0	70	28	26	16	28	1.97
5059057--5059109	26	2.0	26	92	0	88	30	26	16	26	1.97
5059628--5059975	159	2.2	159	89	2	511	21	29	28	20	1.98
5058109--5069183	902	12.4	901	83	5	12521	25	25	24	25	2.00
5061734--5061788	26	2.2	26	90	3	85	30	25	16	27	1.96
5062624--5062679	26	2.2	26	96	0	103	30	25	17	26	1.97
5064432--5064484	26	2.0	26	96	0	97	26	28	20	24	1.99
5065121--5065150	4	7.5	4	92	0	51	3	73	23	0	0.98
5066211--5066263	26	2.0	26	92	0	88	28	24	20	26	1.99
5067114--5067166	26	2.0	26	100	0	106	26	26	20	26	1.99
5068015--5068067	26	2.0	26	96	0	97	26	24	20	28	1.99
5068898--5068974	26	3.0	26	83	7	113	27	25	19	27	1.99
5069749--5069801	26	2.0	26	88	0	79	28	22	18	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5070638--5070690	26	2.0	26	92	0	88	26	26	18	28	1.98
5071530--5071582	26	2.0	26	100	0	106	26	26	20	26	1.99
5072442--5072494	26	2.0	26	96	0	97	26	24	22	26	2.00
5069183--5079482	912	11.5	901	84	5	12206	25	24	23	25	2.00
5075951--5076002	26	2.0	25	92	3	86	28	25	19	26	1.98
5078680--5078732	26	2.0	26	100	0	106	26	26	20	26	1.99
5081757--5081835	26	3.0	26	94	0	131	26	24	18	30	1.98
5080855--5086232	920	6.0	926	72	14	3056	25	24	24	25	2.00
5083491--5083543	26	2.0	26	96	0	97	26	28	20	24	1.99
5084386--5084464	26	3.0	26	96	0	140	26	27	18	26	1.98
5086045--5086390	159	2.2	159	87	0	478	21	28	27	22	1.99
5086365--5086416	26	2.0	26	96	0	95	28	23	19	28	1.98
5088184--5088235	26	2.0	26	96	0	95	28	23	19	28	1.98
5088370--5088422	26	2.0	26	96	0	97	30	24	16	28	1.97
5088177--5088524	185	1.9	186	87	4	515	24	25	27	22	2.00
5090108--5090160	26	2.0	26	92	0	88	28	22	20	28	1.99
5088363--5100002	903	12.8	902	80	7	11677	25	24	24	25	2.00
5093695--5093747	26	2.0	26	92	0	88	26	22	22	28	1.99
5093536--5093954	185	2.3	185	84	3	540	22	26	26	24	2.00
5093880--5093932	26	2.0	26	92	0	88	28	24	18	28	1.98
5094772--5094824	26	2.0	26	92	0	88	26	26	20	26	1.99
5095663--5095715	26	2.0	26	92	0	88	26	26	22	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5096562--5096611	26	2.0	26	96	4	93	26	28	18	28	1.98
5097465--5097517	26	2.0	26	92	0	88	26	22	18	32	1.97
5098359--5098411	26	2.1	26	89	3	81	26	22	20	30	1.98
5099264--5099316	26	2.0	26	88	0	79	28	26	16	28	1.97
5101718--5101770	26	2.0	26	92	7	90	26	26	18	28	1.98
5103494--5103546	26	2.0	26	96	0	97	26	24	20	28	1.99
5104397--5104449	26	2.0	26	92	0	88	26	22	22	28	1.99
5105300--5105352	26	2.0	26	92	0	88	26	22	22	28	1.99
5106206--5106258	26	2.0	26	96	0	97	24	26	20	28	1.99
5107109--5107161	26	2.0	26	92	0	88	26	22	22	28	1.99
5102620--5112532	903	11.0	901	86	3	12833	25	24	24	25	2.00
5108001--5108053	26	2.0	26	92	0	88	32	24	15	28	1.95
5109796--5109848	26	2.0	26	88	0	79	28	22	22	26	1.99
5110682--5110734	26	2.0	26	96	0	97	26	24	20	28	1.99
5111164--5111214	26	1.9	27	84	4	68	54	11	7	25	1.63
5112466--5112518	26	2.0	26	88	0	79	26	24	20	28	1.99
5113239--5113291	26	2.0	26	85	0	70	26	22	20	30	1.98
5114995--5115073	26	3.0	26	100	0	158	26	26	20	26	1.99
5115244--5116742	747	2.0	747	88	1	2229	27	25	22	25	2.00
5117569--5117621	26	2.0	26	100	0	106	26	26	20	26	1.99
5118392--5118441	26	1.9	26	91	0	82	26	28	18	28	1.98
5119287--5119365	26	3.0	26	94	0	131	27	26	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5120209--5120261	26	2.0	26	88	0	79	28	24	20	26	1.99
5117666--5121482	891	4.2	891	84	5	4769	25	24	24	25	2.00
5121098--5121149	26	2.0	26	85	3	70	28	23	17	30	1.97
5123569--5123620	26	2.0	26	92	3	88	28	25	19	26	1.98
5124439--5124494	26	2.2	26	93	0	94	32	21	19	26	1.97
5122512--5130477	868	9.1	863	80	9	8131	25	24	24	25	2.00
5125337--5130413	871	5.8	880	83	6	5850	25	24	24	25	2.00
5128840--5128890	26	2.0	26	92	0	84	23	29	17	29	1.97
5131352--5131404	26	2.0	26	92	0	88	28	28	15	28	1.96
5133135--5133187	26	2.0	26	96	0	97	28	26	18	26	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120