genome.fa.s146.2.7.7.80.10.50.1000.98.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  98  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13381719--13381869	49	3.1	48	83	1	185	44	15	9	30	1.78
13382028--13382205	99	1.8	98	83	3	241	41	20	12	25	1.87
13382026--13382367	173	2.0	173	82	5	424	42	19	12	24	1.86
13382294--13382388	41	2.3	42	83	5	113	45	20	9	25	1.81
13382336--13382615	98	2.8	99	79	4	307	44	20	11	24	1.83
13382340--13382652	98	3.2	97	75	8	292	44	20	11	23	1.84
13383008--13383072	24	2.7	24	80	0	85	33	12	12	41	1.80
13384303--13384349	19	2.5	19	86	10	62	2	19	4	74	1.09
13389110--13389171	10	5.8	10	77	7	52	19	1	3	75	1.02
13389107--13389171	12	5.8	12	76	10	50	20	1	3	75	1.02
13389906--13389951	16	2.9	16	93	0	74	39	10	13	36	1.79
13395653--13395694	22	1.9	22	85	0	57	45	7	11	35	1.69
13395724--13395771	22	2.2	22	84	0	60	50	2	10	37	1.49
13395855--13395914	11	5.5	11	70	7	50	48	5	10	36	1.59
13396168--13396232	22	3.0	22	84	4	87	46	7	6	40	1.58
13396168--13396248	22	3.7	22	83	6	78	46	9	4	38	1.59
13396229--13396265	17	2.2	17	95	0	65	48	16	2	32	1.60
13396624--13396911	22	13.0	22	68	15	119	48	6	7	36	1.59
13396578--13396748	44	3.9	44	78	7	154	49	5	8	36	1.57
13396626--13396711	11	7.9	11	71	1	57	51	6	3	38	1.46
13396624--13396810	67	2.8	68	79	7	188	49	6	5	37	1.54
13396803--13396851	25	1.9	26	87	4	73	42	6	12	38	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13396848--13396938	43	2.1	44	82	10	107	43	5	12	38	1.65
13396965--13397105	22	6.5	22	75	8	99	48	4	10	36	1.60
13397110--13397281	22	7.9	22	71	10	104	44	8	8	38	1.66
13397219--13397293	22	3.4	22	77	0	60	41	8	9	41	1.66
13401157--13401185	13	2.1	14	93	6	51	75	0	0	24	0.80
13402140--13402344	112	1.8	112	84	4	279	33	14	14	38	1.86
13402219--13402476	132	2.0	132	84	3	340	34	15	11	37	1.84
13402351--13402664	112	2.8	112	82	2	371	35	14	11	37	1.82
13402692--13402780	40	2.2	40	87	0	124	39	12	14	33	1.84
13404309--13404353	19	2.4	19	84	0	63	8	11	0	80	0.92
13404740--13404824	9	9.8	9	69	21	65	7	17	0	75	1.02
13404740--13404860	19	6.9	17	77	16	97	7	15	0	76	0.99
13404762--13404788	14	1.9	14	100	0	54	7	18	0	74	1.05
13404740--13404826	33	2.5	36	80	12	103	6	17	0	75	1.01
13404817--13404868	19	2.8	18	82	5	59	5	13	0	80	0.88
13405274--13405307	18	1.9	18	88	5	52	2	11	0	85	0.71
13410459--13410497	20	2.0	20	89	0	60	23	2	10	64	1.37
13411040--13411074	13	2.7	13	100	0	70	40	11	17	31	1.85
13414693--13414722	14	2.1	14	93	0	51	83	0	3	13	0.77
13414995--13415040	21	2.2	21	84	0	56	52	6	6	34	1.53
13421118--13421147	3	10.3	3	92	7	53	70	0	0	30	0.88
13427257--13427293	17	2.2	17	95	0	65	48	16	13	21	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13434435--13434478	19	2.3	19	100	0	88	34	4	22	38	1.75
13435452--13435699	132	1.9	132	86	5	360	40	1	10	47	1.48
13435776--13435824	25	1.9	25	84	12	64	53	0	4	42	1.20
13436719--13436769	27	2.0	26	92	7	86	37	3	0	58	1.16
13437312--13437370	25	2.5	25	83	8	79	57	0	0	42	0.98
13437351--13437432	8	10.1	8	71	20	55	62	0	1	36	1.03
13437297--13437403	24	4.7	23	69	14	60	61	0	0	37	1.02
13439983--13440035	23	2.3	23	79	20	67	33	5	0	60	1.20
13440051--13440106	26	2.0	29	83	10	73	51	3	1	42	1.29
13447502--13447550	26	1.9	25	83	4	62	16	8	18	57	1.63
13447678--13447782	41	2.5	41	76	15	101	50	0	1	46	1.18
13447720--13447775	27	2.1	27	81	12	64	55	0	0	44	0.99
13456731--13456772	21	2.0	21	85	0	57	16	38	4	40	1.70
13456741--13456840	41	2.3	43	80	13	116	17	32	1	50	1.53
13458959--13459056	48	2.0	48	84	3	126	50	18	4	27	1.65
13465013--13465060	23	2.2	21	82	10	53	25	0	25	50	1.50
13469725--13469755	3	10.3	3	100	0	62	35	0	0	64	0.94
13469680--13469830	75	2.0	75	94	0	266	41	3	14	40	1.62
13469806--13469832	3	9.0	3	100	0	54	33	0	0	66	0.92
13471796--13471858	20	3.1	20	81	6	56	49	0	0	50	1.00
13474261--13474302	18	2.3	18	88	8	59	26	7	0	66	1.17
13474486--13474525	21	2.0	21	85	5	55	25	2	5	67	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13475675--13475728	23	2.4	23	84	6	76	7	0	7	85	0.75
13475675--13475729	22	2.5	23	82	5	69	9	0	7	83	0.81
13475740--13475783	3	14.7	3	90	0	70	65	4	0	29	1.12
13475782--13475812	3	10.3	3	92	0	53	29	0	3	67	1.06
13476053--13476369	48	6.5	49	84	5	417	38	22	11	27	1.89
13476037--13476369	97	3.4	97	85	3	461	37	22	12	28	1.90
13488163--13488215	9	5.9	9	81	0	61	18	1	0	79	0.83
13488389--13488434	18	2.6	18	86	6	67	26	4	2	67	1.21
13488614--13488652	20	2.0	20	85	5	53	25	2	5	66	1.25
13491666--13491718	21	2.4	22	90	6	81	47	0	1	50	1.12
13503928--13503953	2	13.0	2	100	0	52	50	0	0	50	1.00
13504429--13504477	3	16.3	3	100	0	98	67	0	0	32	0.91
13504794--13504849	22	2.5	22	97	0	103	51	0	0	48	1.00
13505142--13505192	8	6.4	8	76	15	52	41	0	0	58	0.98
13505145--13505201	11	5.1	11	74	19	55	43	0	0	56	0.99
13508184--13508218	16	2.1	17	89	5	54	40	0	0	60	0.97
13508173--13508225	12	4.5	12	79	11	56	45	0	0	54	0.99
13509337--13509365	6	4.8	6	100	0	58	17	0	0	82	0.66
13512884--13512932	24	2.0	25	84	11	66	61	10	0	28	1.29
13515521--13515562	22	1.9	22	85	9	59	33	4	11	50	1.60
13515754--13515782	2	14.5	2	100	0	58	48	0	0	51	1.00
13523111--13523499	59	6.7	57	80	8	385	37	12	5	43	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13526440--13526560	44	2.7	45	89	1	181	50	15	11	22	1.76
13526517--13526854	42	8.1	41	78	4	311	39	20	13	26	1.89
13528664--13528753	20	4.5	18	76	16	81	4	14	0	81	0.85
13528670--13528720	18	2.8	18	82	11	68	3	11	0	84	0.75
13528681--13528753	15	4.9	14	73	17	58	4	13	0	82	0.81
13528688--13528742	27	2.0	27	89	7	83	3	10	0	85	0.72
13528666--13528753	30	2.8	32	79	19	105	4	13	0	81	0.83
13528666--13528743	16	4.8	16	76	10	79	3	12	0	83	0.78
13528668--13528749	22	3.7	21	73	13	74	4	13	0	81	0.84
13533425--13533665	59	4.2	58	82	5	310	37	13	6	41	1.71
13533468--13533563	31	3.2	31	63	19	76	37	13	7	41	1.72
13533423--13533665	115	2.1	117	88	3	359	37	13	7	41	1.73
13533473--13533861	196	2.0	194	86	6	543	38	11	7	42	1.69
13533532--13533804	137	2.0	138	87	5	401	38	11	7	42	1.70
13533677--13533948	116	2.4	114	87	5	377	37	11	4	45	1.62
13533879--13533911	14	2.4	14	90	5	50	48	3	0	48	1.17
13533677--13533951	59	4.8	58	82	8	346	37	11	4	45	1.62
13536587--13536637	15	3.3	15	76	12	50	74	1	0	23	0.92
13536667--13536725	30	2.0	30	96	0	109	64	10	3	22	1.39
13536719--13536748	2	15.0	2	92	0	51	46	0	0	53	1.00
13544740--13545023	141	2.0	141	90	1	453	32	14	8	44	1.76
13554799--13554842	22	2.0	22	95	0	79	43	13	11	31	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13558499--13558554	26	2.2	26	96	0	103	48	10	23	17	1.79
13565681--13565719	18	2.1	19	86	13	55	25	0	0	74	0.82
13575239--13575633	198	2.0	198	93	0	682	27	16	15	40	1.89
13588730--13588782	23	2.3	23	96	0	97	35	5	5	52	1.49
13590195--13590219	7	3.6	7	100	0	50	88	0	0	12	0.53
13594988--13595022	2	17.5	2	88	11	54	2	45	0	51	1.16
13601011--13601131	21	5.9	21	76	12	99	43	2	2	51	1.28
13600984--13601088	31	3.3	31	77	12	88	42	1	2	52	1.27
13601011--13601146	42	3.5	39	76	14	118	44	2	2	51	1.26
13600984--13601486	10	49.1	10	64	18	105	44	3	2	49	1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120