genome.fa.s146.2.7.7.80.10.50.1000.84.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  84  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10806280--10806330	20	2.5	20	87	6	75	47	0	0	52	1.00
10806280--10806340	20	2.8	21	80	12	70	47	0	0	52	1.00
10806409--10806468	31	1.9	31	82	0	75	56	5	3	35	1.37
10809016--10809067	19	2.8	19	85	8	63	44	0	0	55	0.99
10809035--10809097	23	2.5	25	80	15	76	41	0	1	57	1.08
10816356--10816420	32	2.0	32	93	0	112	40	13	10	35	1.80
10816635--10816699	13	5.0	12	73	19	51	81	1	9	7	0.93
10817108--10817157	23	2.2	23	96	0	91	22	16	20	42	1.89
10826375--10826418	19	2.3	19	80	7	54	75	6	6	11	1.20
10826878--10826903	13	2.0	13	100	0	52	46	0	0	53	1.00
10826929--10826990	20	3.2	20	73	17	60	40	3	1	54	1.26
10828312--10828396	34	2.5	34	79	7	102	43	1	1	54	1.15
10828569--10828612	19	2.3	19	84	7	54	75	2	4	18	1.09
10828771--10828923	79	1.9	79	95	0	279	32	17	15	34	1.92
10830513--10830567	7	7.9	7	75	13	51	67	0	29	3	1.08
10833009--10833049	18	2.4	17	84	15	57	82	2	12	2	0.86
10834213--10834323	51	2.2	50	85	4	143	29	7	15	47	1.72
10834452--10834572	50	2.4	50	88	2	172	30	6	14	48	1.68
10836197--10836243	10	4.9	10	75	19	55	85	0	14	0	0.61
10836203--10836244	7	6.0	7	79	20	52	83	0	16	0	0.65
10836819--10836856	19	2.0	20	89	5	60	44	7	5	42	1.56
10836819--10836856	20	1.9	19	89	5	58	44	7	5	42	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10840814--10840858	19	2.4	18	82	13	56	53	0	0	46	1.00
10841343--10841402	9	6.4	9	78	14	50	71	0	3	25	1.01
10841447--10841503	21	2.7	22	83	8	73	66	7	0	26	1.17
10841453--10841524	20	3.5	21	79	9	67	66	8	0	25	1.19
10841935--10841986	20	2.7	20	83	13	65	63	7	1	26	1.32
10841935--10841990	10	5.7	10	74	2	51	64	7	1	26	1.29
10842013--10842068	28	2.0	27	82	6	67	58	8	1	30	1.39
10842258--10842327	28	2.5	27	79	9	68	28	5	4	61	1.38
10842402--10842474	32	2.4	30	77	6	83	39	5	2	52	1.39
10842619--10842706	33	2.6	34	82	8	101	30	2	0	67	1.03
10846739--10847185	219	2.0	219	94	0	777	35	10	17	36	1.84
10852570--10852604	14	2.5	14	90	0	52	45	0	0	54	0.99
10861605--10861631	4	6.8	4	100	0	54	25	0	0	74	0.83
10861706--10861772	13	5.1	13	78	8	57	73	2	2	20	1.10
10861925--10861991	27	2.5	27	95	0	125	26	32	0	40	1.57
10862756--10862803	22	2.1	23	84	3	62	64	10	2	22	1.35
10866875--10866904	16	1.9	15	93	6	51	80	6	0	13	0.91
10867748--10867786	19	2.1	19	95	0	69	33	38	0	28	1.57
10867832--10868010	3	59.7	3	72	16	104	60	7	1	29	1.34
10868715--10868753	7	5.6	7	82	11	53	33	0	0	66	0.92
10868724--10868766	11	4.0	11	87	6	61	41	0	0	58	0.98
10868714--10868776	21	3.0	21	75	11	65	36	0	0	63	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10868717--10868764	14	3.6	14	76	21	50	37	0	0	62	0.95
10869288--10869329	22	1.9	22	95	0	75	38	19	19	23	1.93
10870503--10870540	15	2.4	16	82	8	51	42	0	7	50	1.31
10870513--10870543	15	2.1	15	93	0	53	51	0	6	41	1.27
10871386--10871424	17	2.4	16	88	12	62	41	0	0	58	0.98
10871437--10871489	25	2.1	25	82	0	61	43	1	0	54	1.11
10871445--10871495	25	2.1	25	85	3	68	37	1	0	60	1.08
10871600--10871628	15	2.0	15	93	6	51	58	0	0	41	0.98
10871626--10871671	15	3.1	14	81	12	56	34	0	4	60	1.16
10871718--10871744	3	9.0	3	100	0	54	66	0	0	33	0.92
10872054--10872127	19	4.1	19	68	25	61	44	0	1	54	1.08
10872059--10872170	34	3.3	33	73	21	99	46	0	1	50	1.17
10872103--10872177	32	2.4	31	80	10	89	42	1	1	54	1.17
10872242--10872280	20	2.0	20	84	0	51	56	5	0	38	1.22
10872463--10872507	16	2.7	17	86	6	65	28	0	0	71	0.87
10872467--10872519	18	3.1	17	78	7	54	28	3	0	67	1.07
10874161--10874263	53	1.9	53	94	0	179	37	12	28	21	1.90
10879852--10879947	49	2.0	49	85	0	129	26	13	10	50	1.74
10879987--10880057	37	1.9	37	82	0	88	40	35	2	21	1.68
10880026--10880079	19	2.8	20	81	10	60	46	35	1	16	1.58
10882862--10882904	22	1.9	23	85	4	61	48	9	0	41	1.35
10883946--10884003	11	5.1	11	80	15	64	10	0	10	79	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10883944--10884019	35	2.1	37	87	4	111	14	1	10	73	1.15
10883950--10884039	37	2.5	34	77	11	99	13	1	10	75	1.10
10884361--10885051	73	9.8	73	77	11	588	43	12	22	21	1.86
10884550--10884663	58	2.0	58	85	0	156	46	13	18	21	1.83
10884489--10884736	131	1.9	131	88	0	379	45	12	20	22	1.84
10884624--10885048	215	2.0	215	89	0	645	43	11	23	22	1.85
10884620--10885050	142	3.0	142	85	4	558	43	11	22	22	1.85
10884900--10885023	38	3.4	38	68	11	105	47	11	20	20	1.80
10886086--10886174	1	89.0	1	71	0	52	7	4	3	84	0.86
10886089--10886161	8	8.9	8	79	14	69	9	4	2	83	0.87
10886083--10886174	31	3.0	31	78	12	93	8	5	3	82	0.92
10886088--10886162	10	7.9	9	77	14	62	9	4	2	84	0.86
10886086--10886175	15	5.8	15	76	12	74	8	4	3	83	0.89
10886085--10886175	30	3.0	30	77	13	98	9	4	3	82	0.92
10897867--10897909	22	1.9	23	90	4	70	48	6	0	44	1.29
10898875--10898951	20	3.7	19	81	10	64	3	3	10	81	0.94
10898894--10898967	26	2.9	25	86	7	96	6	1	10	81	0.94
10898899--10898970	33	2.2	32	85	2	90	8	1	12	77	1.04
10898916--10899000	33	2.7	32	82	12	95	12	1	11	74	1.14
10900135--10900178	19	2.4	18	82	17	56	54	0	0	45	0.99
10900140--10900184	21	2.2	20	84	11	56	62	0	0	37	0.96
10900139--10900185	20	2.3	21	82	10	62	59	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10903176--10903220	20	2.1	22	88	8	67	57	15	0	26	1.38
10909041--10909085	3	15.0	3	85	0	63	62	0	35	2	1.08
10909041--10909085	12	3.8	12	87	0	72	62	0	35	2	1.08
10912125--10912244	63	1.9	63	81	10	147	33	10	17	39	1.83
10920299--10920572	143	1.9	143	83	7	351	36	12	16	35	1.86
10920501--10920716	62	3.5	62	77	6	190	40	12	13	33	1.81
10920536--10920744	63	3.4	61	77	7	206	42	12	10	34	1.78
10921713--10921742	6	5.0	6	100	0	60	16	0	0	83	0.65
10922763--10922823	20	2.8	21	85	12	79	49	0	0	50	1.00
10922763--10922813	20	2.5	20	93	6	84	49	0	0	50	1.00
10922890--10922951	15	4.1	15	73	8	54	54	4	4	35	1.43
10925507--10925558	22	2.3	22	80	9	52	40	0	3	55	1.18
10925840--10926009	62	2.8	61	75	6	155	38	14	4	43	1.64
10927178--10927258	28	2.9	28	96	3	146	22	18	14	44	1.86
10932636--10932660	9	2.8	9	100	0	50	92	0	8	0	0.40
10933601--10933661	21	3.0	20	79	15	70	3	4	9	81	0.94
10933621--10933661	19	2.1	19	90	4	64	4	2	9	82	0.89
10933599--10933697	43	2.3	43	81	3	112	9	3	10	77	1.08
10933632--10933668	13	3.1	12	92	7	58	5	0	10	83	0.79
10933658--10933731	18	4.2	17	72	14	62	17	1	9	71	1.19
10933601--10933690	10	8.7	10	71	23	53	6	3	11	78	1.05
10933643--10933703	30	2.0	32	83	6	81	13	1	11	73	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10937164--10937869	21	33.6	21	70	12	314	50	10	5	33	1.59
10937560--10937617	22	2.8	20	75	10	62	50	12	6	31	1.66
10937530--10937597	31	2.2	32	81	2	75	55	13	5	25	1.60
10941876--10941906	15	2.0	16	93	6	55	0	19	0	80	0.71
10947844--10947887	2	22.0	2	100	0	88	0	50	0	50	1.00
10957241--10957265	5	5.0	5	100	0	50	80	0	0	20	0.72
10957948--10958011	24	2.8	21	76	19	56	51	1	0	46	1.10
10958022--10958059	15	2.5	15	91	8	60	73	10	0	15	1.09
10962058--10962125	13	4.8	14	74	13	50	20	1	30	47	1.59
10962076--10962252	29	6.1	28	71	10	124	23	0	28	47	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120