genome.fa.s146.2.7.7.80.10.50.1000.85.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  85  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10962103--10962182	30	2.7	29	72	14	74	22	1	27	48	1.58
10962263--10962323	16	3.9	16	80	4	79	16	0	32	50	1.45
10964044--10964246	36	5.6	36	74	15	123	42	12	23	21	1.86
10964067--10964219	35	4.3	35	74	19	129	46	9	22	20	1.80
10964393--10964459	34	2.0	34	96	0	125	53	8	16	20	1.69
10964396--10964452	19	3.2	19	69	19	59	56	8	14	21	1.65
10964447--10965432	170	5.8	171	87	2	1260	47	11	18	22	1.80
10964427--10965432	338	3.0	339	86	3	1312	47	11	17	22	1.80
10964447--10965432	508	1.9	509	86	3	1396	47	11	18	22	1.80
10966058--10966114	22	2.7	20	74	15	51	17	21	3	57	1.54
10966648--10966680	9	3.7	9	91	0	57	9	0	6	84	0.76
10978044--10978089	23	2.0	23	82	0	56	39	4	17	39	1.69
10978077--10978127	22	2.4	22	80	9	61	19	0	31	49	1.49
10978077--10978185	30	3.7	28	73	15	85	22	1	28	46	1.62
10978137--10978247	28	3.9	28	71	8	98	22	0	27	48	1.57
10978275--10978345	16	4.4	16	83	3	88	18	1	30	49	1.56
10978260--10978336	33	2.3	33	84	4	102	20	2	27	49	1.62
10979878--10979906	3	9.7	3	100	0	58	34	0	0	65	0.93
10979998--10980266	135	2.0	135	86	5	384	42	20	10	27	1.84
10981188--10981242	27	2.0	27	92	0	92	38	1	9	50	1.45
10981248--10981327	30	2.7	30	86	0	106	23	3	21	51	1.64
10984670--10984700	15	2.1	15	94	5	55	32	0	3	64	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10987633--10988142	168	3.0	168	96	0	921	29	15	14	39	1.88
10988910--10988939	2	15.0	2	100	0	60	50	0	50	0	1.00
10989206--10989305	26	4.0	26	85	10	154	49	8	13	30	1.70
10989207--10989303	48	2.0	48	100	0	194	50	8	12	28	1.69
10998641--10998681	3	13.7	3	94	0	73	63	2	34	0	1.08
10998868--10998996	64	2.0	64	95	0	231	48	20	11	20	1.80
11000233--11000290	28	2.1	28	100	0	116	48	8	18	24	1.76
11005166--11005197	2	16.5	2	93	6	57	50	0	0	50	1.00
11005411--11005461	21	2.4	21	76	0	57	33	5	3	56	1.42
11010840--11010890	21	2.4	21	76	0	57	33	5	3	56	1.42
11010961--11010997	16	2.2	17	90	9	58	35	5	2	56	1.36
11012963--11013060	51	1.9	50	82	13	121	58	4	1	36	1.24
11013070--11013113	22	2.0	23	82	13	56	47	0	2	50	1.13
11013294--11013345	20	2.5	21	84	12	72	42	15	0	42	1.47
11014554--11014627	19	4.1	18	72	10	60	51	0	1	47	1.09
11027776--11028080	61	5.0	60	70	13	217	36	14	12	36	1.84
11027707--11028080	123	3.0	120	79	9	407	37	14	13	34	1.85
11029861--11029981	32	3.8	32	80	1	136	35	2	8	53	1.44
11030021--11030059	16	2.3	18	91	8	64	46	0	2	51	1.14
11030213--11030253	18	2.3	19	87	8	59	43	2	9	43	1.50
11030409--11030467	29	2.1	28	84	12	77	57	3	0	38	1.15
11030647--11030702	28	2.0	28	96	0	103	44	3	5	46	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11031128--11031165	20	2.0	20	84	5	51	78	2	10	7	1.04
11032112--11032136	3	8.3	3	100	0	50	0	36	32	32	1.58
11037045--11037106	28	2.3	26	79	15	72	41	1	0	56	1.09
11037366--11037418	23	2.3	23	78	15	56	54	0	1	43	1.11
11039184--11039229	21	2.2	21	81	11	60	58	0	0	41	0.98
11039404--11039459	27	2.0	28	86	3	78	57	0	0	42	0.99
11048675--11048699	4	6.2	4	100	0	50	0	48	28	24	1.52
11050059--11050106	25	1.9	25	86	0	69	52	2	10	35	1.48
11050507--11050569	32	2.1	31	82	8	85	60	1	6	31	1.31
11054037--11054125	33	2.5	36	74	18	87	65	0	1	33	1.00
11054078--11054161	29	2.9	28	75	13	78	66	1	1	30	1.07
11054042--11054161	14	8.9	14	71	21	62	65	0	0	33	1.05
11054245--11054302	26	2.2	26	82	11	73	53	0	1	44	1.10
11068802--11068840	16	2.5	16	95	4	71	38	5	12	43	1.65
11070453--11070478	13	2.0	13	100	0	52	15	15	7	61	1.55
11071376--11071420	22	2.0	22	82	4	54	17	2	8	71	1.23
11076207--11076270	28	2.3	27	83	2	74	46	3	0	50	1.17
11078473--11078508	11	3.3	11	88	0	54	77	0	0	22	0.76
11079209--11079573	43	8.4	44	81	2	353	44	15	13	26	1.83
11080911--11080954	16	2.8	16	83	16	56	15	13	0	70	1.17
11080938--11080995	27	2.1	30	87	12	88	22	8	0	68	1.16
11085545--11085604	26	2.5	22	73	19	66	46	3	3	46	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11085545--11085615	24	2.9	24	75	20	76	46	2	4	46	1.37
11087595--11087635	18	2.3	18	84	12	50	65	7	2	24	1.30
11095350--11095381	14	2.2	15	94	5	57	56	0	9	34	1.32
11095474--11095525	24	2.1	25	82	10	63	36	1	0	61	1.07
11095507--11095569	24	2.7	23	69	13	56	49	3	1	46	1.27
11105749--11105791	22	2.0	22	86	4	61	27	16	0	55	1.41
11111946--11111988	22	2.0	22	100	0	86	32	23	4	39	1.75
11126407--11126441	18	2.0	17	88	5	52	42	0	2	54	1.15
11126450--11126511	31	2.0	31	84	6	81	19	24	8	48	1.75
11127270--11127306	14	2.7	13	88	12	56	56	0	29	13	1.37
11129808--11129863	27	2.1	27	93	0	94	26	14	10	48	1.76
11138775--11138848	38	2.0	37	91	2	121	33	0	10	55	1.35
11139064--11139092	12	2.3	13	94	5	51	65	0	6	27	1.18
11140239--11140275	18	2.1	19	85	10	51	51	0	2	45	1.15
11141773--11141847	32	2.3	32	84	4	89	42	14	9	33	1.78
11148718--11148748	2	15.5	2	100	0	62	51	0	0	48	1.00
11148864--11148896	2	16.5	2	100	0	66	48	0	0	51	1.00
11150586--11150622	18	2.1	18	100	0	74	37	0	10	51	1.37
11153937--11153975	17	2.2	17	86	9	51	58	2	2	35	1.25
11154058--11154108	21	2.5	20	78	6	57	56	3	5	33	1.42
11154142--11154176	18	1.9	19	88	11	56	37	5	5	51	1.50
11154202--11154281	25	3.4	23	78	18	69	45	6	5	43	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11154461--11154535	28	2.7	27	76	11	71	60	1	2	36	1.20
11160925--11160963	3	13.0	3	100	0	78	33	0	0	66	0.92
11162942--11162974	17	1.9	17	93	0	57	81	3	3	12	0.91
11165320--11165360	20	2.0	21	95	4	75	70	0	9	19	1.14
11168125--11168185	20	3.0	21	83	9	74	31	19	13	36	1.90
11168198--11168438	76	3.2	75	79	9	224	32	16	14	36	1.89
11168251--11168455	76	2.7	76	81	7	229	32	16	15	35	1.91
11168788--11168938	50	3.0	50	82	8	173	31	8	13	45	1.74
11170585--11170613	10	2.9	10	100	0	58	37	51	0	10	1.36
11171854--11171889	3	12.0	3	100	0	72	33	0	0	66	0.92
11173842--11173881	17	2.4	17	83	4	55	40	0	10	50	1.36
11177344--11177454	30	3.7	30	74	9	93	37	10	4	46	1.59
11177493--11177552	25	2.2	29	83	16	76	50	3	8	38	1.49
11185362--11185417	25	2.2	24	79	14	60	23	3	1	71	1.11
11186173--11186223	22	2.3	22	93	0	84	47	1	1	49	1.24
11186800--11186857	25	2.3	25	82	11	66	56	1	1	39	1.19
11186920--11186973	22	2.5	21	75	21	58	51	0	1	46	1.11
11186949--11187014	19	3.5	17	75	17	60	54	3	7	34	1.44
11186946--11187048	29	3.7	28	76	7	86	57	2	5	33	1.38
11187270--11187299	11	2.6	11	94	5	51	40	0	0	60	0.97
11187399--11187431	8	4.2	8	92	7	59	75	0	0	24	0.80
11187399--11187430	15	2.1	15	100	0	64	75	0	0	25	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11189355--11189405	19	2.8	18	82	8	68	25	0	1	72	0.95
11189986--11190051	17	4.1	16	73	16	57	51	0	0	48	1.00
11193143--11193200	8	7.7	7	80	18	55	15	0	29	55	1.41
11193189--11193229	16	2.6	16	88	3	57	29	0	19	51	1.47
11193265--11193312	15	3.2	14	85	5	51	29	2	14	54	1.52
11193389--11193438	15	3.2	15	81	15	57	24	0	26	50	1.50
11193451--11193485	16	2.2	16	89	0	52	22	5	17	54	1.64
11193490--11193546	15	3.7	15	79	13	55	19	0	33	47	1.50
11194055--11194122	7	9.6	7	73	19	52	23	2	2	70	1.15
11194053--11194117	28	2.3	29	78	10	71	23	3	3	70	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120