genome.fa.s146.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  2  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
123654--123706	26	2.0	26	96	0	97	28	26	18	26	1.98
124557--124609	26	2.0	26	96	0	97	30	24	16	28	1.97
125456--125508	26	2.0	26	88	0	79	28	22	18	30	1.98
126353--126403	26	2.0	26	92	7	86	27	27	17	27	1.98
127256--127308	26	2.0	26	88	0	79	32	24	16	26	1.97
128156--128208	26	2.0	26	88	0	79	30	20	16	32	1.95
129517--129566	26	1.9	26	95	0	91	28	26	18	28	1.98
130413--130468	25	2.2	26	90	3	87	26	26	19	26	1.99
130413--130490	25	3.0	25	83	3	75	29	23	19	28	1.98
129523--131363	924	2.0	924	87	3	2704	25	24	23	25	2.00
132000--132025	4	6.5	4	100	0	52	0	73	26	0	0.84
129540--135660	884	6.9	879	84	5	7332	25	25	24	25	2.00
133965--134017	26	2.0	26	96	0	97	28	26	18	26	1.98
135821--136699	438	2.0	438	91	1	1431	32	22	16	27	1.96
136904--136956	26	2.0	26	85	0	70	28	22	16	32	1.96
137807--137856	26	1.9	26	95	0	91	26	26	20	28	1.99
136256--143955	898	8.6	897	86	3	10212	25	24	23	25	2.00
139601--139652	26	2.0	25	89	10	79	26	23	19	30	1.98
140076--140133	26	2.2	26	84	9	73	63	6	6	22	1.43
140503--140555	26	2.0	26	88	0	79	28	20	22	28	1.99
143186--143237	26	2.0	26	85	10	72	26	25	19	28	1.98
143929--143981	26	2.0	26	96	0	97	26	24	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
144823--144874	26	2.0	26	100	0	104	26	26	19	26	1.99
145728--145799	26	2.8	26	95	0	126	27	19	20	31	1.97
146588--146640	26	2.0	26	96	0	97	28	26	18	26	1.98
146939--147612	340	2.0	340	96	0	1233	35	21	17	25	1.95
147825--147903	26	3.0	26	98	0	149	27	22	18	30	1.98
150473--150525	26	2.0	26	96	0	97	26	24	20	28	1.99
147851--155503	845	8.8	852	81	8	7563	25	24	24	25	2.00
151753--151810	26	2.2	26	84	9	73	63	6	6	22	1.43
152179--152231	26	2.0	26	88	0	79	28	20	22	28	1.99
153062--153113	26	2.0	26	96	3	97	26	26	19	26	1.99
153967--154018	26	2.0	26	88	0	77	26	25	21	26	1.99
154861--154912	26	2.0	26	88	3	79	28	26	17	26	1.97
151318--155630	896	4.8	897	85	3	5727	26	24	23	25	2.00
155604--155656	26	2.0	26	96	0	97	26	24	20	28	1.99
154851--156371	741	2.0	744	88	2	2252	27	23	23	25	2.00
157400--157451	26	2.0	26	88	3	79	26	26	19	26	1.99
155575--157803	895	2.5	895	86	2	3159	24	24	25	26	2.00
157657--157976	177	1.8	177	91	0	532	28	21	20	30	1.98
158480--158532	26	2.0	26	92	0	88	26	30	20	22	1.98
160263--160314	26	2.0	26	100	0	104	26	26	19	26	1.99
157834--161672	904	4.3	902	86	2	5137	26	24	23	25	2.00
161167--161219	26	2.0	26	96	0	97	26	24	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
161644--161691	25	1.9	25	100	0	96	45	20	6	27	1.75
162428--162480	26	2.0	26	96	0	97	26	24	22	26	2.00
163332--163384	26	2.0	26	96	0	97	28	26	18	26	1.98
161999--164656	885	3.0	879	84	4	3246	25	24	24	25	2.00
164217--164269	26	2.0	26	92	0	88	28	24	18	28	1.98
163860--165461	793	2.0	799	88	3	2368	23	25	25	25	2.00
165739--165794	26	2.2	26	90	0	85	30	21	17	30	1.96
165670--167970	904	2.6	896	87	3	3218	24	24	24	25	2.00
167540--167592	26	2.0	26	92	0	88	28	24	20	26	1.99
168301--168353	26	2.0	26	89	7	81	32	26	15	26	1.95
169028--169083	26	2.2	26	90	0	85	30	21	17	30	1.96
169893--169942	26	1.9	26	100	0	100	30	24	18	28	1.97
170764--170814	26	2.0	26	96	0	93	25	25	21	27	1.99
170367--174470	901	4.6	901	87	2	5741	25	25	24	24	2.00
172568--172619	26	2.0	26	88	0	77	28	25	15	30	1.96
173471--173520	26	1.9	26	100	0	100	24	26	20	30	1.98
174372--174423	26	2.0	26	88	3	79	28	23	21	26	1.99
175049--175101	26	2.0	26	100	0	106	26	26	20	26	1.99
175948--176003	26	2.2	26	93	0	94	28	23	17	30	1.97
176841--176893	26	2.0	26	88	0	79	28	26	18	26	1.98
174475--177966	890	3.9	893	86	2	4780	25	24	24	25	2.00
177732--177783	26	2.0	26	92	3	88	26	21	19	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
178168--178220	26	2.0	26	88	0	79	28	24	18	28	1.98
177578--178401	436	1.9	436	84	2	1125	18	26	32	23	1.97
179932--179982	26	2.0	26	84	7	68	29	27	15	27	1.96
177974--186993	890	9.9	895	74	11	6798	25	24	24	25	2.00
180820--180875	26	2.2	26	96	0	103	30	25	17	26	1.97
182231--182583	184	1.9	184	93	1	609	30	27	20	21	1.98
183687--183739	26	2.0	26	88	0	79	26	30	18	24	1.98
182415--192343	892	11.2	903	84	4	12253	25	25	24	24	2.00
185484--185536	26	2.0	26	92	0	88	26	28	18	26	1.98
182415--186993	905	5.1	901	87	2	6370	25	24	24	24	2.00
186378--186427	26	1.9	26	95	0	91	22	28	22	28	1.99
188086--188138	26	2.0	26	85	7	72	26	22	24	26	2.00
188982--189034	26	2.0	26	92	0	88	22	22	22	32	1.98
189888--189940	26	2.0	26	96	0	97	26	26	22	24	2.00
186998--192343	901	6.0	900	86	2	7145	25	25	24	24	2.00
192384--192462	26	3.0	26	100	0	158	26	22	20	30	1.98
192410--209472	901	18.9	897	73	11	9703	25	24	23	25	2.00
195977--196029	26	2.0	26	96	0	97	28	24	20	26	1.99
195115--197632	888	2.8	882	86	4	3423	25	24	24	25	2.00
196861--196911	26	2.0	26	88	0	75	29	25	15	29	1.96
197606--197658	26	2.0	26	96	0	97	26	26	18	28	1.98
198314--198344	12	2.6	12	94	0	53	0	64	22	12	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
198680--198732	26	2.0	26	92	0	88	30	26	16	26	1.97
199568--199620	26	2.0	26	96	0	97	28	26	18	26	1.98
200769--200820	26	2.0	26	96	0	95	26	26	17	28	1.97
201664--201716	26	2.0	26	100	0	106	26	26	20	26	1.99
205044--205122	26	3.0	26	92	0	131	26	21	20	31	1.98
206867--206949	26	3.2	26	94	0	139	31	25	15	27	1.96
205978--209505	912	3.9	912	87	4	5213	26	25	23	24	2.00
208680--208762	26	3.2	26	94	0	139	31	25	15	27	1.96
207791--209505	918	1.9	915	89	2	2650	26	24	23	24	2.00
210191--210241	25	2.0	26	92	3	86	31	23	17	27	1.97
211942--211991	26	1.9	26	95	0	91	26	24	20	30	1.98
212842--212920	26	3.0	26	98	0	149	26	25	20	27	1.99
216082--216134	26	2.0	26	92	0	88	26	22	24	26	2.00
214363--220767	904	6.9	898	77	10	6048	25	25	24	25	2.00
214362--217963	898	4.0	899	87	1	5051	25	25	24	25	2.00
216988--217038	26	2.0	26	100	0	102	27	25	19	27	1.99
217882--217934	26	2.0	26	96	0	97	24	28	20	26	1.99
217723--218130	185	2.2	185	89	0	600	20	30	27	21	1.98
218067--218119	26	2.0	26	92	0	88	28	24	18	28	1.98
217908--224924	904	7.9	895	85	4	8799	25	24	24	25	2.00
219878--219930	26	2.0	26	92	0	88	28	24	16	30	1.97
221616--221668	26	2.0	26	88	0	79	30	28	18	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
225058--225109	26	2.0	25	88	3	77	28	25	19	26	1.98
225968--226020	26	2.0	26	92	0	88	28	24	18	28	1.98
226694--226745	25	2.0	25	85	3	68	28	23	21	26	1.99
227595--227647	26	2.0	26	92	0	88	26	22	22	28	1.99
228495--228547	26	2.0	26	96	0	97	26	24	20	28	1.99
229384--229436	26	2.0	26	92	0	88	28	28	18	24	1.98
226147--235178	902	10.0	902	83	6	10361	25	24	24	25	2.00
233041--233091	26	2.0	26	96	0	93	27	23	19	29	1.98
233947--233996	26	1.9	26	100	0	100	24	26	20	30	1.98
235681--236082	180	2.2	179	95	1	707	33	12	8	45	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120