genome.fa.s146.2.7.7.80.10.50.1000.38.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  38  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4193119--4193276	45	3.5	45	74	8	133	19	32	27	20	1.97
4193562--4193612	26	2.0	26	92	0	84	27	15	27	29	1.96
4193917--4193969	26	2.0	26	92	7	90	24	16	26	32	1.97
4193746--4194124	196	1.9	195	79	6	426	23	26	27	22	2.00
4200796--4200908	45	2.5	45	83	0	127	21	33	26	18	1.96
4201535--4201905	196	1.9	196	80	4	435	24	29	24	21	1.99
4202751--4202862	45	2.5	45	80	0	125	17	36	25	19	1.94
4203270--4203322	26	2.0	26	88	0	79	28	20	22	28	1.99
4203625--4203677	26	2.0	26	89	7	81	22	18	28	30	1.98
4203473--4203832	196	1.8	196	83	4	485	21	29	27	21	1.99
4204578--4204820	45	5.4	45	73	7	181	18	33	27	20	1.96
4204618--4204790	90	1.9	90	83	2	222	17	32	28	20	1.96
4204606--4204820	90	2.4	90	77	4	218	18	32	28	20	1.96
4204578--4204821	135	1.8	135	81	3	303	18	33	27	20	1.96
4205383--4205461	26	3.0	26	94	0	131	22	20	30	26	1.98
4206392--4206549	45	3.5	45	78	3	165	18	32	29	18	1.95
4206851--4207136	159	1.8	158	80	5	353	22	26	31	20	1.98
4207185--4207242	26	2.2	27	87	3	82	22	18	29	29	1.98
4208798--4208988	90	2.1	90	83	1	240	17	31	31	19	1.95
4208798--4208991	45	4.3	45	79	6	205	17	31	31	19	1.95
4209547--4209751	112	1.8	113	84	3	279	14	31	26	26	1.95
4210527--4210728	45	4.5	44	75	6	181	18	33	29	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4210496--4210723	90	2.5	90	82	6	241	17	32	29	20	1.96
4211170--4211248	26	3.0	26	88	0	122	29	17	24	29	1.97
4212168--4212192	13	1.9	13	100	0	50	24	16	36	24	1.94
4212223--4212392	90	1.9	90	82	0	214	20	32	28	18	1.96
4212195--4212402	45	4.6	45	77	4	161	19	34	27	18	1.95
4212834--4212912	26	3.0	26	88	3	115	30	15	24	30	1.95
4213176--4213228	26	2.0	26	92	0	88	22	20	28	28	1.99
4213968--4213992	13	1.9	13	100	0	50	24	16	36	24	1.94
4215766--4215940	45	3.9	45	81	3	190	17	34	30	16	1.93
4216728--4216778	26	2.0	26	84	0	66	27	19	27	25	1.99
4218611--4218663	26	2.0	26	92	0	88	26	20	26	26	1.99
4220507--4220714	90	2.3	89	80	5	229	18	33	29	18	1.95
4221008--4221060	26	2.0	26	88	0	79	32	20	20	26	1.98
4221033--4221328	159	1.9	159	83	2	389	23	30	28	18	1.97
4221364--4221416	26	2.0	26	92	0	88	26	20	26	26	1.99
4227371--4227522	45	3.4	45	76	0	162	17	33	29	19	1.95
4229323--4229471	45	3.3	45	79	0	172	18	32	30	18	1.95
4230205--4230239	12	2.9	12	95	0	61	8	40	22	28	1.84
4230261--4230313	26	2.0	26	92	0	88	24	18	28	28	1.98
4231256--4231411	45	3.5	45	77	0	168	17	32	30	19	1.95
4231244--4231407	90	1.8	90	81	0	202	17	32	31	19	1.95
4232197--4232249	26	2.0	26	89	7	81	24	20	26	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4232223--4232661	170	2.6	170	80	3	481	23	26	28	21	1.99
4239283--4239335	26	2.0	26	100	0	106	26	20	26	26	1.99
4243751--4243801	26	2.0	26	92	0	84	31	17	27	23	1.97
4239212--4250717	903	12.9	891	84	5	13516	25	24	24	25	2.00
4248169--4248221	26	2.0	26	89	7	81	28	16	24	30	1.97
4249078--4249130	26	2.0	26	100	0	106	26	20	26	26	1.99
4247292--4250717	909	3.8	900	87	3	4592	26	24	24	25	2.00
4251378--4251430	26	2.0	26	92	0	88	28	20	26	24	1.99
4251636--4252613	490	2.0	488	89	1	1492	28	18	21	32	1.97
4252771--4252823	26	2.0	26	92	0	88	28	16	26	28	1.97
4253572--4253602	11	2.8	11	100	0	62	9	38	35	16	1.81
4254565--4254617	26	2.0	26	96	0	97	26	18	26	28	1.98
4252123--4255451	880	3.8	877	82	8	4022	25	23	24	26	2.00
4256787--4256836	26	1.9	26	91	0	82	28	14	28	30	1.95
4257677--4257729	26	2.0	26	96	0	97	26	22	24	26	2.00
4256009--4258516	892	2.8	890	87	3	3502	25	24	24	26	2.00
4258843--4258871	14	2.1	14	100	0	58	20	0	31	48	1.50
4260862--4260940	26	3.0	26	96	0	149	29	20	24	26	1.99
4262641--4262693	26	2.0	26	85	0	70	30	16	22	30	1.96
4263545--4263597	26	2.0	26	96	0	97	26	18	26	28	1.98
4260421--4265175	903	5.3	889	84	5	5762	26	23	24	25	2.00
4264691--4265665	490	2.0	488	90	1	1551	28	18	21	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4265823--4265875	26	2.0	26	96	0	97	26	18	26	28	1.98
4266631--4266665	11	3.2	11	91	0	61	17	34	31	17	1.93
4266624--4266665	22	1.9	22	95	0	75	14	35	30	19	1.91
4267622--4267674	26	2.0	26	96	0	97	26	18	26	28	1.98
4269888--4269937	26	1.9	26	95	0	91	28	14	30	28	1.95
4270119--4270152	4	8.5	4	86	0	50	2	26	67	2	1.19
4270798--4270850	26	2.0	26	92	0	88	28	20	22	28	1.99
4271688--4271740	26	2.0	26	92	0	88	30	20	22	26	1.98
4273470--4273522	26	2.0	26	96	0	97	26	20	24	28	1.99
4269167--4279804	902	11.8	899	86	3	13459	25	23	24	25	2.00
4274371--4274423	26	2.0	26	88	0	79	28	22	22	26	1.99
4275265--4275317	26	2.0	26	96	0	97	26	18	26	28	1.98
4276167--4276219	26	2.0	26	88	0	79	26	18	26	28	1.98
4277062--4277112	26	2.0	26	100	0	102	31	21	19	27	1.97
4277960--4278031	26	2.8	26	95	0	126	29	18	25	27	1.98
4278887--4278940	26	2.1	26	92	0	90	25	16	25	31	1.97
4279039--4281160	808	2.6	811	91	2	3368	25	23	23	27	2.00
4281039--4281279	119	2.0	118	95	0	428	39	19	14	26	1.91
4281513--4281564	25	2.0	26	96	3	97	28	21	23	26	1.99
4282414--4282466	26	2.0	26	88	0	79	26	16	28	28	1.97
4284839--4284890	26	2.0	25	92	3	86	28	17	25	28	1.97
4285734--4285786	26	2.0	26	92	0	88	26	20	22	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4284358--4287924	890	4.0	890	86	4	4860	25	23	24	26	2.00
4286623--4286674	26	2.0	25	96	3	95	26	17	26	28	1.97
4287515--4287567	26	2.0	26	100	0	106	26	20	26	26	1.99
4287718--4288135	211	2.0	208	89	2	640	25	22	27	24	2.00
4288288--4288340	26	2.0	26	96	0	97	28	20	24	26	1.99
4288314--4290977	873	3.0	866	85	5	3401	25	24	25	25	2.00
4290952--4291002	26	2.0	25	92	3	84	29	17	23	29	1.97
4291694--4291746	26	2.0	26	92	0	88	26	22	24	26	2.00
4292424--4292476	26	2.0	26	92	0	88	26	22	24	26	2.00
4290233--4292914	730	3.6	728	90	3	3861	26	23	23	26	2.00
4294060--4294112	26	2.0	26	88	0	79	28	20	22	28	1.99
4295617--4295669	26	2.0	26	85	0	70	32	15	24	28	1.95
4296357--4296409	26	2.0	26	92	0	88	26	16	26	30	1.97
4297199--4297251	26	2.0	26	85	0	70	32	15	24	28	1.95
4297930--4297982	26	2.0	26	92	0	88	24	18	26	30	1.98
4298823--4298875	26	2.0	26	92	0	88	24	18	26	30	1.98
4299725--4299777	26	2.0	26	92	0	88	28	22	24	24	2.00
4297225--4303333	893	6.8	901	88	3	8059	25	23	24	25	2.00
4301491--4301543	26	2.0	26	92	0	88	24	16	24	33	1.96
4302391--4302443	27	2.0	27	92	3	90	30	15	24	30	1.95
4302548--4304051	718	2.1	723	85	4	2068	26	22	23	27	2.00
4304025--4304077	26	2.0	26	92	0	88	28	18	24	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4304051--4304414	159	2.3	159	86	1	505	25	29	26	18	1.98
4304647--4304697	26	2.0	26	92	0	84	27	7	29	35	1.85
4305537--4305589	26	2.0	26	96	0	97	26	20	24	28	1.99
4306294--4306346	26	2.0	26	96	0	97	26	18	26	28	1.98
4306625--4306677	26	2.0	26	96	0	97	26	18	26	28	1.98
4306874--4308260	706	2.0	706	90	1	2219	25	23	23	27	2.00
4308234--4308286	26	2.0	26	96	0	97	24	20	26	28	1.99
4310888--4310940	26	2.0	26	96	0	97	24	22	26	26	2.00
4311791--4311843	26	2.0	26	92	0	88	26	16	26	30	1.97
4312670--4312722	26	2.0	26	92	0	88	24	18	28	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120