genome.fa.s146.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  3  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
235681--236099	60	7.0	59	83	8	508	32	12	8	46	1.72
236108--236182	23	3.1	24	85	12	84	77	1	4	17	0.99
236117--236195	11	6.7	11	71	15	52	78	1	3	16	0.96
236114--236183	8	9.0	7	77	16	59	78	1	2	17	0.94
236117--236209	33	2.8	32	74	20	77	76	1	4	18	1.01
236159--236200	20	2.0	21	82	13	52	76	0	7	16	1.00
237129--237202	30	2.4	29	82	12	87	63	2	9	24	1.37
237192--237230	17	2.2	18	90	4	62	76	2	0	20	0.90
237213--237256	3	15.7	3	81	13	58	70	0	0	29	0.88
237195--237365	12	14.6	12	68	20	60	64	4	0	30	1.18
237208--237287	20	3.8	21	70	26	53	66	2	0	31	1.05
237221--237357	40	3.5	39	72	18	106	61	5	0	32	1.23
237226--237376	9	15.9	10	69	22	53	61	5	0	31	1.25
237566--237628	1	63.0	1	77	0	63	0	1	9	88	0.57
237566--237625	10	5.8	10	87	12	86	0	1	10	88	0.59
237566--237624	21	2.8	21	94	5	102	0	1	10	88	0.60
237635--237858	41	5.4	41	94	1	394	34	25	18	21	1.96
237635--237855	83	2.7	82	94	0	388	35	24	17	22	1.95
237839--237878	20	2.0	20	95	0	71	25	27	20	27	1.99
237798--237919	61	2.0	61	93	0	208	31	25	18	25	1.97
237859--237960	41	2.5	41	90	3	161	35	24	14	25	1.94
237757--238061	102	3.0	102	93	0	520	35	24	16	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
237900--238021	61	2.0	61	91	3	201	34	25	15	24	1.95
237677--238106	143	3.0	142	76	11	489	36	24	16	23	1.94
237961--238132	41	4.2	41	94	1	292	36	23	15	25	1.93
239338--239375	18	2.2	18	85	4	51	2	13	0	84	0.73
239346--239388	10	4.4	10	77	16	54	0	16	0	83	0.64
239327--239374	8	6.1	8	80	4	53	4	14	0	81	0.84
239346--239385	18	2.2	19	90	4	64	0	15	0	85	0.61
243269--243673	60	6.8	58	83	10	507	33	13	8	44	1.74
243269--243673	122	3.4	120	88	8	605	33	13	8	44	1.74
243701--243782	23	3.3	23	76	8	74	78	1	3	17	0.97
243689--243774	14	6.3	13	72	18	59	76	1	4	17	1.01
243694--243780	30	2.9	30	79	6	97	77	1	4	17	1.01
243712--243782	18	4.3	17	67	24	53	78	0	4	16	0.90
243723--243796	30	2.6	28	79	12	80	75	0	5	18	0.99
244695--244789	30	3.2	30	80	10	106	65	2	8	24	1.32
244800--244866	14	4.9	14	74	22	54	67	1	0	31	1.00
245017--245057	20	2.0	21	90	4	66	19	24	29	26	1.98
246274--246352	26	3.0	26	86	0	122	30	24	17	27	1.97
245339--247830	924	2.7	899	83	6	3277	26	24	23	25	2.00
248765--248817	26	2.0	26	96	0	97	28	26	18	26	1.98
248586--249474	469	1.9	468	86	1	1253	19	26	30	23	1.98
251040--251092	26	2.0	26	100	0	106	26	26	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
249011--252862	899	4.3	899	88	2	5364	25	25	24	25	2.00
251940--251992	26	2.0	26	88	0	79	30	28	16	24	1.97
252909--255091	870	2.5	856	85	6	2898	27	23	22	26	2.00
254329--255886	794	2.0	793	88	1	2341	27	23	24	24	2.00
256126--256178	26	2.0	26	85	0	70	28	24	18	28	1.98
255253--257767	906	2.8	881	85	4	3346	25	24	24	25	2.00
257741--257793	26	2.0	26	92	0	88	28	24	18	28	1.98
256932--258447	732	2.1	735	90	1	2414	25	23	24	26	2.00
262121--262170	26	1.9	26	100	0	100	26	26	20	28	1.99
263027--263076	26	1.9	26	95	0	91	28	26	18	28	1.98
260512--273533	903	14.6	901	85	4	16208	26	25	23	25	2.00
263725--263750	12	2.2	12	100	0	52	0	65	26	7	1.20
263931--263982	26	2.0	26	92	3	88	28	25	19	26	1.98
267423--267475	26	2.0	26	85	7	72	22	24	24	28	2.00
268316--268366	26	2.0	26	88	7	77	29	27	15	27	1.96
266552--273533	902	7.8	896	86	3	9074	26	25	23	25	2.00
272764--272816	26	2.0	26	85	7	72	28	20	18	32	1.97
273507--273559	26	2.0	26	92	0	88	26	26	20	26	1.99
272743--275730	719	4.1	743	86	4	4080	26	23	23	26	2.00
274253--274305	26	2.0	26	92	0	88	28	24	18	28	1.98
275855--275907	26	2.0	26	96	0	97	28	26	18	26	1.98
275103--277987	870	3.2	863	83	7	3483	25	25	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
276733--276783	26	2.0	26	100	0	102	29	27	15	27	1.96
278879--282967	917	4.5	892	82	7	4643	25	25	23	24	2.00
281903--281981	26	3.0	25	90	3	113	30	24	17	27	1.97
282820--282872	26	2.0	26	92	0	88	26	26	20	26	1.99
284122--284174	26	2.0	26	96	0	97	28	26	18	26	1.98
284952--285004	26	2.0	26	96	0	97	28	26	18	26	1.98
283322--285502	830	2.6	829	94	0	3798	25	24	23	26	2.00
285856--285908	26	2.0	26	92	0	88	28	24	18	28	1.98
284675--287859	891	3.6	889	85	4	4198	25	25	24	24	2.00
287636--287688	26	2.0	26	92	0	88	26	22	22	28	1.99
288903--288936	14	2.5	13	86	9	50	88	0	8	2	0.62
289098--289153	1	56.0	1	81	0	67	0	0	8	91	0.43
289098--289153	9	6.7	9	90	10	84	0	0	8	91	0.43
289160--289378	40	5.4	41	93	4	376	34	25	18	21	1.96
289323--289437	59	1.9	59	98	0	221	33	26	17	22	1.96
289382--289476	40	2.3	41	98	1	183	36	25	15	22	1.93
289418--289536	59	2.0	60	98	1	231	34	25	16	23	1.95
289459--289494	18	2.0	18	100	0	72	27	27	16	27	1.97
289280--289577	99	3.0	100	94	4	516	34	25	17	22	1.95
289477--289608	41	3.2	41	98	1	255	34	25	16	23	1.95
290814--290851	18	2.2	18	85	4	51	2	13	0	84	0.73
290822--290864	10	4.4	10	77	16	54	0	16	0	83	0.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
290803--290850	8	6.1	8	80	4	53	4	14	0	81	0.84
290822--290861	18	2.2	19	90	4	64	0	15	0	85	0.61
294741--295175	61	7.1	62	78	15	410	33	13	8	44	1.74
295178--295259	23	3.3	23	76	8	74	78	1	3	17	0.97
295191--295251	14	4.2	13	76	19	59	78	0	3	18	0.88
295171--295257	30	2.9	30	79	6	97	77	1	4	17	1.01
295189--295259	18	4.3	17	67	24	53	78	0	4	16	0.90
295200--295273	30	2.6	28	79	12	80	75	0	5	18	0.99
296194--296264	28	2.5	29	82	11	92	64	1	8	25	1.30
296268--296317	9	6.4	8	76	19	52	72	0	0	28	0.86
296274--296316	3	15.7	3	81	18	58	69	0	0	30	0.88
296274--296338	20	3.2	20	81	16	64	66	1	0	32	1.01
296274--296349	31	2.8	27	83	16	79	64	2	0	32	1.07
296270--296347	23	3.6	21	74	19	63	65	2	0	32	1.06
296394--296451	28	2.1	28	83	6	73	75	5	1	17	1.06
296436--296461	12	2.2	12	100	0	52	92	0	7	0	0.39
296490--296530	20	2.0	21	90	4	66	19	24	29	26	1.98
297745--297822	26	3.0	26	88	0	120	30	24	16	28	1.97
298668--298720	26	2.0	26	85	0	70	33	26	11	28	1.91
296811--299299	924	2.7	897	83	6	3253	26	23	23	26	2.00
300235--300287	26	2.0	26	96	0	97	28	26	18	26	1.98
301615--301667	26	2.0	26	92	0	88	28	24	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
302515--302567	26	2.0	26	100	0	106	26	26	20	26	1.99
300483--303946	901	3.8	903	86	3	4528	25	25	23	25	2.00
306890--306937	25	1.9	25	91	0	78	29	25	18	27	1.98
305279--322091	905	18.6	903	77	9	14527	25	25	23	25	2.00
308495--308520	12	2.2	12	100	0	52	0	65	26	7	1.20
308701--308752	26	2.0	26	92	3	88	28	25	19	26	1.98
311112--311489	179	2.1	175	84	4	492	16	34	28	21	1.95
312440--312489	26	1.9	26	87	0	73	30	24	16	30	1.96
313142--313167	12	2.2	12	100	0	52	0	65	26	7	1.20
313348--313400	26	2.0	26	100	0	106	26	26	20	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120