genome.fa.s146.2.7.7.80.10.50.1000.77.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  77  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9645937--9646024	46	1.9	46	90	0	140	38	12	11	37	1.79
9645958--9646033	25	3.2	23	78	15	84	34	11	10	43	1.76
9645935--9646131	107	1.8	107	87	0	295	36	14	10	39	1.80
9646028--9646130	46	2.2	46	91	0	161	34	15	8	40	1.78
9646028--9646134	25	4.7	23	73	15	96	34	15	9	40	1.80
9647400--9647462	7	8.6	7	77	22	67	3	14	0	82	0.79
9647400--9647461	15	4.3	14	82	11	72	3	14	0	82	0.80
9647847--9647881	18	1.9	18	88	0	52	0	5	5	88	0.63
9651337--9651500	60	2.7	59	79	5	204	29	10	8	50	1.67
9651662--9651702	12	3.3	12	83	6	55	73	7	0	19	1.07
9651662--9651711	25	2.0	25	88	7	75	74	6	0	20	1.03
9652613--9652678	33	2.0	33	82	11	82	71	3	7	18	1.23
9652629--9652677	15	3.0	16	72	16	55	71	2	4	22	1.13
9653051--9653103	3	17.3	3	81	11	63	33	3	0	62	1.13
9653051--9653092	12	3.6	12	96	3	77	33	4	0	61	1.17
9653623--9653662	20	2.0	21	90	5	64	22	2	22	52	1.59
9653673--9653732	32	1.9	31	83	10	77	28	15	18	38	1.91
9655051--9655136	39	2.2	39	85	0	109	23	9	3	63	1.39
9661093--9661174	42	2.0	42	90	0	128	39	8	14	37	1.77
9664860--9664921	23	2.7	23	85	9	90	72	0	0	27	0.85
9664878--9664923	8	5.6	8	80	19	51	76	0	0	23	0.79
9664878--9664923	15	2.8	17	80	16	60	76	0	0	23	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9665667--9665792	59	2.1	59	80	2	137	19	23	12	45	1.84
9665734--9666099	115	3.2	114	80	5	382	19	22	13	43	1.86
9665771--9666180	114	3.6	114	81	4	344	19	21	14	44	1.85
9665726--9666181	115	4.0	116	79	3	370	19	21	13	44	1.85
9666130--9666255	56	2.2	56	84	2	164	19	18	15	46	1.84
9666596--9666918	3	108.3	3	86	5	246	25	3	7	64	1.35
9666917--9666972	11	5.2	11	83	10	62	0	17	1	80	0.80
9667807--9667844	19	2.0	19	94	0	67	15	2	2	78	0.97
9667954--9667991	19	1.9	19	89	5	58	57	18	0	23	1.40
9668042--9668105	21	3.0	22	78	15	62	59	6	0	34	1.23
9670750--9670779	10	3.1	10	95	4	53	36	0	0	63	0.95
9670752--9670781	9	3.2	9	95	4	51	36	0	0	63	0.95
9671842--9671877	13	2.6	14	86	4	56	5	2	2	88	0.67
9671957--9672087	25	5.1	27	80	10	132	28	3	12	56	1.50
9682526--9682552	2	13.5	2	100	0	54	51	0	0	48	1.00
9683581--9683627	25	1.9	24	86	4	67	23	12	36	27	1.91
9690205--9690236	2	16.0	2	100	0	64	50	0	0	50	1.00
9691156--9691219	16	3.9	16	80	10	58	37	3	6	53	1.42
9699894--9699923	10	3.1	10	95	4	53	36	0	0	63	0.95
9699896--9699925	9	3.2	9	95	4	51	36	0	0	63	0.95
9702141--9702186	25	1.9	24	91	8	76	30	26	0	43	1.55
9702705--9702742	20	1.9	20	84	10	51	76	5	2	15	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9702726--9702783	20	3.0	20	70	14	57	75	5	3	15	1.11
9703220--9703360	61	2.2	65	82	7	175	31	14	16	37	1.88
9705194--9705230	19	1.9	19	88	0	56	86	8	0	5	0.70
9711840--9711960	30	4.0	30	79	12	122	38	9	2	49	1.48
9713660--9713692	13	2.6	13	90	4	50	21	0	9	69	1.15
9715510--9715562	27	2.0	27	84	0	70	37	0	5	56	1.23
9716241--9716276	18	2.0	18	94	0	63	41	33	13	11	1.80
9717011--9717079	2	36.0	2	75	13	65	47	0	1	50	1.09
9717015--9717078	13	4.9	13	77	11	69	48	0	1	50	1.10
9717029--9717079	25	2.0	25	88	7	77	49	0	1	49	1.12
9717162--9717204	12	3.7	12	81	3	52	60	0	18	20	1.36
9720369--9720412	22	2.0	22	86	8	63	20	2	31	45	1.64
9720444--9720520	36	2.1	36	81	9	86	20	0	29	49	1.49
9722088--9722152	27	2.4	28	76	7	71	29	24	26	20	1.99
9722835--9723001	35	4.8	35	69	19	89	41	11	24	22	1.87
9722937--9723205	34	7.8	34	69	9	118	38	11	26	24	1.88
9722917--9723240	69	4.7	69	82	0	380	39	11	25	23	1.88
9722925--9723240	35	9.1	34	76	4	240	39	11	25	23	1.88
9735739--9735793	22	2.5	22	93	0	92	16	0	30	52	1.44
9735805--9735847	22	2.0	22	90	9	70	25	0	30	44	1.55
9735784--9735876	30	3.2	29	76	10	91	18	1	33	47	1.56
9735838--9735889	22	2.4	22	75	9	54	19	0	34	46	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9735989--9736019	3	10.3	3	100	0	62	32	0	0	67	0.91
9740015--9740061	22	2.1	22	84	7	60	34	6	6	53	1.52
9740684--9740709	13	2.0	13	100	0	52	46	0	0	53	1.00
9742647--9742685	2	19.5	2	100	0	78	48	0	0	51	1.00
9745145--9745191	6	7.7	6	81	9	51	23	0	4	72	1.02
9745140--9745192	19	2.8	19	85	2	72	20	0	7	71	1.10
9745122--9745191	25	2.9	25	83	10	83	21	1	8	68	1.24
9746265--9746297	12	2.6	13	90	4	50	12	3	15	69	1.30
9752480--9752525	23	2.0	23	91	0	74	36	15	17	30	1.91
9752847--9752871	13	1.9	13	100	0	50	32	24	4	40	1.73
9753434--9753511	6	12.5	6	81	5	66	21	1	10	66	1.29
9753457--9753511	13	4.2	13	78	0	65	21	0	9	69	1.16
9753438--9753517	19	4.3	18	84	7	88	22	1	10	66	1.29
9753426--9753517	6	15.0	6	76	8	60	23	1	9	65	1.29
9753522--9753546	11	2.3	11	100	0	50	84	0	8	8	0.79
9754691--9754787	19	5.1	19	89	0	131	35	6	7	51	1.54
9754684--9754791	19	5.7	19	85	5	112	34	6	7	51	1.55
9763638--9763698	30	2.0	30	96	0	113	50	8	0	40	1.32
9763638--9763690	18	3.3	17	70	29	53	49	9	0	41	1.35
9764636--9764896	127	2.1	127	100	0	522	36	11	20	31	1.89
9767086--9767235	82	1.8	81	85	7	214	36	20	12	31	1.90
9771222--9771265	24	1.9	24	86	9	65	43	0	2	54	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9771783--9772059	121	2.3	121	81	3	322	36	12	10	40	1.77
9772078--9772472	127	3.1	125	76	9	311	38	10	10	40	1.75
9772317--9772713	189	2.1	189	80	5	437	40	10	10	39	1.73
9772418--9772718	63	4.8	63	71	11	152	39	10	9	40	1.71
9772797--9772913	62	1.9	61	87	5	173	46	10	11	32	1.73
9773784--9773822	16	2.4	17	86	4	53	71	7	0	20	1.10
9773772--9773835	23	3.0	20	82	13	74	71	4	0	23	1.04
9774220--9774244	11	2.3	11	100	0	50	92	0	8	0	0.40
9779850--9779929	33	2.3	34	87	8	108	58	0	0	41	0.98
9788781--9788824	19	2.2	20	84	4	54	40	4	13	40	1.65
9789495--9789570	35	2.2	35	80	2	91	39	9	6	44	1.62
9789914--9789970	9	6.7	9	69	18	50	71	3	1	22	1.10
9789915--9789967	24	2.2	24	96	0	97	73	3	1	20	1.08
9790606--9790645	17	2.4	17	95	0	71	35	15	15	35	1.88
9790998--9791059	26	2.4	25	76	7	61	27	0	11	61	1.30
9792987--9793016	15	1.9	16	93	6	53	60	0	20	20	1.37
9799821--9799849	15	2.0	15	93	6	51	34	0	3	62	1.12
9800637--9800679	13	3.0	14	80	12	52	62	25	4	6	1.40
9803496--9803523	2	14.0	2	100	0	56	50	0	0	50	1.00
9803892--9803932	2	21.0	2	95	5	75	48	0	0	51	1.00
9804209--9804233	2	12.5	2	100	0	50	52	0	0	48	1.00
9808004--9808041	18	2.2	18	85	4	51	42	2	10	44	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9807815--9808547	362	2.0	361	97	1	1380	35	9	11	43	1.72
9808620--9808699	23	3.5	22	81	6	72	53	7	6	32	1.54
9809607--9809943	187	1.8	187	84	7	470	36	10	7	45	1.67
9810726--9811076	42	8.4	42	84	3	431	44	15	16	23	1.85
9810726--9811076	125	2.8	125	85	5	474	44	15	16	23	1.85
9811540--9811584	21	2.1	21	88	8	65	40	15	8	35	1.79
9811515--9811569	28	2.0	28	89	7	85	40	20	7	32	1.80
9813622--9813672	23	2.5	20	80	20	68	47	21	5	25	1.73
9813630--9813673	23	2.0	22	95	4	79	50	20	4	25	1.67
9817748--9817774	4	6.8	4	100	0	54	74	0	0	25	0.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120