genome.fa.s146.2.7.7.80.10.50.1000.120.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  120  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19085154--19085235	28	3.0	28	82	8	98	53	1	1	43	1.16
19088775--19088942	83	2.0	83	100	0	336	48	13	13	25	1.78
19092409--19092433	3	8.3	3	100	0	50	64	0	0	36	0.94
19092940--19092991	21	2.4	21	77	3	59	46	1	1	50	1.23
19093008--19093049	22	1.9	22	90	9	68	50	14	7	28	1.69
19100280--19100308	8	3.8	8	90	9	51	10	0	0	89	0.48
19100280--19100308	15	1.9	15	100	0	58	10	0	0	89	0.48
19100549--19100606	24	2.3	24	79	5	62	46	5	0	48	1.24
19101702--19101919	43	5.1	41	73	9	145	48	17	9	24	1.77
19101728--19101928	43	4.7	43	74	6	176	47	17	9	24	1.79
19101728--19101917	86	2.2	84	83	7	222	48	16	10	24	1.77
19102690--19103049	22	16.7	22	82	6	407	43	15	6	35	1.72
19102690--19103047	43	8.3	43	84	5	411	43	15	6	35	1.72
19104101--19104145	23	2.0	23	86	8	65	6	15	0	77	0.96
19105987--19106283	154	1.9	154	97	0	558	32	17	17	31	1.94
19110242--19110286	18	2.4	19	85	7	65	44	15	6	33	1.73
19113814--19113839	1	26.0	1	100	0	52	100	0	0	0	0.00
19114898--19114922	2	12.5	2	100	0	50	52	48	0	0	1.00
19122375--19122409	2	17.5	2	100	0	70	0	0	48	51	1.00
19122817--19122858	20	2.1	20	100	0	84	35	26	9	28	1.88
19124046--19125003	513	1.9	511	82	3	1228	34	12	16	36	1.87
19125356--19125413	18	3.3	17	70	15	55	22	3	12	62	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19125348--19125416	36	1.9	36	94	2	122	21	2	11	63	1.40
19128538--19128610	28	2.6	27	78	6	83	46	26	1	26	1.61
19132834--19132941	28	3.8	28	87	1	162	46	31	0	22	1.52
19135047--19135077	6	5.2	6	92	0	53	83	3	0	12	0.75
19143101--19143154	13	4.2	13	76	11	58	25	0	0	74	0.83
19143110--19143156	18	2.6	19	83	13	71	29	0	0	70	0.88
19143123--19143155	12	2.8	12	86	4	50	30	0	0	69	0.88
19143793--19143827	2	17.5	2	87	0	52	45	2	0	51	1.16
19163177--19163248	35	2.1	35	100	0	144	40	16	8	34	1.79
19170824--19170867	2	22.5	2	86	4	63	45	0	4	50	1.22
19172122--19172151	2	15.5	2	93	6	53	50	0	0	50	1.00
19173565--19173631	27	2.5	28	88	11	106	41	2	17	37	1.65
19188825--19188874	22	2.3	22	83	13	68	34	0	8	58	1.28
19189844--19189881	19	2.0	19	94	0	67	36	13	31	18	1.89
19192353--19192399	19	2.5	19	80	16	53	63	0	2	34	1.06
19192971--19193001	3	10.7	3	93	6	55	67	0	0	32	0.91
19192782--19193241	251	1.8	253	92	1	782	53	9	4	32	1.53
19194086--19194124	19	2.1	19	85	9	53	12	0	10	76	1.01
19193977--19194396	214	2.0	207	85	6	567	24	7	16	52	1.68
19194525--19194549	13	1.9	13	100	0	50	32	8	0	60	1.26
19196653--19200999	180	24.1	179	72	10	1789	43	5	6	44	1.52
19197991--19198319	181	1.8	181	82	5	423	45	6	4	42	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19198386--19202712	361	12.0	360	74	9	2542	43	6	6	44	1.54
19199289--19202723	181	19.1	181	73	9	1858	43	6	6	43	1.54
19201754--19201804	18	2.8	19	77	14	63	47	3	0	49	1.20
19202245--19202278	16	2.1	16	88	0	50	70	0	2	26	1.01
19202612--19202647	16	2.2	17	90	5	56	61	0	0	38	0.96
19204317--19205569	181	7.0	180	79	7	1053	43	6	6	42	1.57
19204850--19204889	19	2.1	19	85	4	53	37	7	0	55	1.29
19204349--19205569	358	3.4	354	79	5	1145	43	6	6	43	1.57
19205627--19206277	181	3.6	178	81	6	706	42	6	6	44	1.57
19206336--19206802	181	2.6	180	78	9	495	46	5	4	43	1.46
19207513--19207545	12	2.8	12	95	0	57	48	0	0	51	1.00
19207694--19207761	22	3.0	22	76	4	64	54	2	8	33	1.47
19217233--19217327	22	4.3	22	82	2	111	51	1	7	40	1.37
19217245--19217327	11	7.5	11	70	0	67	50	1	6	42	1.34
19217258--19217359	44	2.3	43	80	8	116	45	1	8	44	1.46
19217423--19217476	21	2.5	21	84	3	63	55	5	9	29	1.54
19217371--19217543	65	2.6	65	75	12	165	53	4	6	35	1.49
19217441--19217782	22	15.8	21	70	13	142	48	6	9	35	1.61
19217679--19217715	19	1.9	19	94	0	65	43	2	13	40	1.58
19217806--19217874	11	6.3	11	72	12	52	49	5	2	42	1.41
19217753--19217852	33	3.1	32	76	15	100	45	2	8	45	1.44
19217814--19217953	22	6.4	22	76	4	104	47	8	5	38	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19217940--19218010	22	3.3	21	82	7	79	49	4	11	35	1.58
19218275--19218393	22	5.4	22	70	13	93	50	6	7	35	1.57
19218329--19218389	11	5.5	11	74	0	50	52	4	4	37	1.45
19218272--19218420	44	3.4	44	81	7	144	48	6	8	37	1.57
19218544--19218631	42	2.0	44	86	4	126	51	3	6	38	1.46
19218517--19219039	22	24.0	22	67	9	106	46	6	9	38	1.61
19219369--19219422	21	2.5	21	79	8	56	51	3	3	40	1.37
19219981--19220017	16	2.3	16	85	0	56	59	10	2	27	1.44
19220217--19220291	22	3.4	22	73	10	62	40	1	1	57	1.16
19220228--19220290	23	2.8	23	83	9	67	38	1	1	58	1.17
19220323--19220370	23	2.0	24	88	4	71	41	4	6	47	1.48
19220753--19220806	23	2.3	23	79	17	58	51	1	3	42	1.30
19226261--19226292	17	1.9	17	93	6	57	37	6	0	56	1.25
19227986--19228031	8	5.5	8	80	10	56	82	0	4	13	0.81
19227985--19228021	19	1.9	19	88	0	56	81	0	2	16	0.81
19227986--19228031	17	2.7	17	83	9	58	82	0	4	13	0.81
19228942--19228966	7	3.6	7	100	0	50	88	0	0	12	0.53
19233712--19233749	9	4.2	9	83	10	51	10	2	0	86	0.66
19233706--19233748	17	2.5	17	92	0	68	13	2	0	83	0.74
19235956--19235999	20	2.2	20	88	11	65	79	13	2	4	0.98
19241256--19241348	42	2.2	43	86	1	134	29	7	21	41	1.80
19241418--19241535	56	2.1	57	88	4	177	21	13	22	43	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19241558--19241928	203	1.9	197	80	6	442	23	11	21	43	1.85
19241480--19241963	99	4.8	99	76	7	424	22	11	21	44	1.85
19241795--19242044	99	2.5	100	77	7	242	25	13	18	42	1.87
19243179--19243235	28	2.0	29	86	10	82	26	0	3	70	1.03
19243342--19243394	18	3.0	16	78	15	52	73	3	1	20	1.08
19251452--19251506	25	2.2	25	83	0	65	25	20	20	34	1.96
19251755--19251856	42	2.5	42	83	3	109	24	10	18	46	1.81
19251825--19252032	43	4.9	42	78	9	181	23	12	21	43	1.86
19252204--19252228	9	2.8	9	100	0	50	92	0	0	8	0.40
19253002--19253026	8	3.1	8	100	0	50	12	0	0	88	0.53
19256664--19256708	23	2.0	23	82	8	56	15	24	0	60	1.36
19258537--19260424	963	2.0	944	86	5	2640	42	7	10	40	1.67
19262680--19262726	23	2.0	24	83	4	60	42	6	19	31	1.76
19265081--19265139	14	3.9	14	77	14	55	57	1	3	37	1.25
19265095--19265129	17	2.0	17	88	5	52	60	2	0	37	1.12
19266618--19267070	182	2.5	179	78	6	457	41	6	7	43	1.60
19267405--19268303	356	2.5	357	79	5	788	40	7	9	41	1.66
19267099--19268551	179	8.1	177	75	9	883	40	6	9	42	1.64
19268252--19268306	18	3.1	17	73	21	51	45	1	7	45	1.41
19267486--19268529	536	1.9	535	80	6	1200	41	7	9	42	1.64
19267486--19268470	357	2.8	356	79	8	875	41	7	9	41	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120

The End!