genome.fa.s146.2.7.7.80.10.50.1000.99.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  99  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13601209--13601338	33	3.9	33	89	1	188	47	4	1	46	1.32
13601263--13601320	23	2.5	24	78	13	59	50	8	0	41	1.33
13601527--13601578	21	2.5	22	87	9	81	50	0	1	48	1.12
13602163--13602328	70	2.4	70	90	1	251	33	16	7	42	1.77
13602163--13602365	70	2.8	69	82	8	228	35	16	7	39	1.77
13603071--13603103	2	16.5	2	100	0	66	51	0	0	48	1.00
13618102--13618145	16	2.6	17	82	10	54	31	0	2	65	1.05
13618459--13618502	23	2.0	23	86	13	65	47	0	4	47	1.22
13621888--13621920	1	33.0	1	93	0	57	96	3	0	0	0.20
13624235--13624267	2	16.5	2	100	0	66	48	0	0	51	1.00
13625480--13625554	24	3.1	24	90	0	123	17	10	10	61	1.56
13634854--13634885	14	2.3	14	100	0	64	40	6	6	46	1.54
13643724--13643767	23	1.9	23	86	9	63	40	2	11	45	1.53
13648606--13648634	8	3.6	8	100	0	58	89	0	0	10	0.48
13652297--13652402	52	2.0	52	88	0	158	31	16	11	40	1.84
13667603--13667634	16	2.1	15	94	5	55	40	6	43	9	1.62
13675438--13675463	9	2.9	9	100	0	52	30	11	0	57	1.34
13683551--13683575	2	12.5	2	100	0	50	48	0	0	52	1.00
13684269--13684298	3	9.7	3	92	7	51	33	0	0	66	0.92
13685086--13685119	17	2.0	17	88	0	50	82	2	11	2	0.89
13685761--13685817	2	28.5	2	100	0	114	0	49	0	50	1.00
13689411--13689493	42	2.0	42	85	0	112	31	37	10	20	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13700498--13700594	39	2.4	41	83	11	119	37	0	2	60	1.08
13711984--13712024	15	2.6	16	77	14	50	73	4	0	21	1.02
13711984--13712027	16	2.8	16	83	10	56	72	4	0	22	1.02
13711986--13712085	25	4.2	22	71	17	67	66	2	2	30	1.14
13712026--13712101	21	3.5	21	79	15	66	59	0	2	38	1.12
13713682--13713742	27	2.3	27	82	5	70	60	1	3	34	1.23
13713825--13713877	20	2.7	19	78	16	56	47	0	3	49	1.19
13713890--13713938	26	1.9	25	83	4	62	51	0	0	48	1.00
13713888--13713950	24	2.9	21	80	17	74	49	0	0	50	1.00
13714264--13714302	14	2.8	14	92	0	60	38	0	0	61	0.96
13714379--13714437	26	2.3	25	82	11	66	45	0	1	52	1.10
13714453--13714530	16	4.8	16	76	17	63	51	1	0	47	1.09
13714461--13714508	18	2.8	18	87	12	66	45	0	0	54	0.99
13714624--13714667	22	2.0	23	90	4	72	36	6	2	54	1.40
13716136--13716168	15	2.1	17	88	11	52	15	3	0	81	0.80
13718081--13718135	23	2.3	24	75	6	58	41	1	0	56	1.10
13718989--13719040	23	2.3	22	90	6	77	51	3	0	44	1.19
13718989--13719048	23	2.6	23	86	5	68	53	3	0	43	1.17
13719738--13719792	25	2.1	27	86	6	78	45	0	5	49	1.25
13719784--13719837	25	2.0	27	82	10	67	50	1	0	48	1.11
13719940--13719972	16	2.0	17	94	5	59	66	3	0	30	1.06
13730242--13730284	21	2.0	21	100	0	86	39	13	23	23	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13734932--13735217	143	2.0	143	91	0	464	35	20	23	20	1.96
13737654--13737704	11	4.6	11	82	0	66	45	25	1	27	1.64
13737654--13737704	22	2.3	22	93	0	84	45	25	1	27	1.64
13737944--13738005	25	2.5	25	82	17	76	22	33	6	37	1.80
13738689--13738730	11	3.8	11	87	0	66	50	26	0	23	1.50
13738689--13738731	22	2.0	22	95	0	77	48	25	0	25	1.51
13742495--13742698	101	2.0	101	99	0	399	33	6	16	43	1.74
13746286--13746377	40	2.3	40	80	1	112	42	6	5	45	1.53
13746855--13746896	22	1.9	22	90	9	68	57	0	7	35	1.26
13747045--13747075	2	15.5	2	100	0	62	51	0	0	48	1.00
13748702--13748743	19	2.2	19	87	8	59	54	0	4	40	1.21
13748703--13748743	20	2.1	19	90	4	64	56	0	4	39	1.21
13750957--13752085	560	2.0	557	90	2	1733	39	8	13	39	1.74
13752313--13752337	10	2.5	10	100	0	50	60	0	0	40	0.97
13753170--13753285	55	2.1	55	82	6	137	46	9	6	37	1.61
13769241--13769298	2	29.0	2	96	0	107	51	0	48	0	1.00
13771257--13771303	22	2.2	22	85	11	62	29	4	14	51	1.62
13778200--13778246	22	2.2	22	85	11	62	29	4	14	51	1.62
13784075--13784119	11	4.0	11	82	5	54	68	0	2	28	1.01
13785431--13785470	16	2.4	16	87	8	53	65	0	0	35	0.93
13785438--13785473	16	2.3	15	95	4	63	63	0	0	36	0.94
13785739--13785768	14	2.1	14	100	0	60	43	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13785746--13785839	23	3.9	23	75	17	66	48	2	1	47	1.20
13792216--13792278	29	2.1	29	85	8	83	42	1	3	52	1.27
13793445--13793475	2	15.5	2	100	0	62	48	0	0	51	1.00
13795820--13796101	153	1.8	153	79	7	331	41	13	21	23	1.88
13824464--13824528	32	2.0	32	82	11	80	36	3	3	56	1.30
13831384--13831441	25	2.3	25	80	8	64	25	1	10	62	1.37
13836075--13836126	16	2.8	18	80	19	63	36	0	0	63	0.95
13838570--13838617	20	2.4	20	78	0	60	50	0	0	50	1.00
13839074--13839117	18	2.4	18	85	11	54	56	0	2	40	1.11
13839089--13839126	20	1.9	20	88	0	58	52	0	0	47	1.00
13842705--13842744	4	10.2	4	89	5	64	72	0	2	25	0.97
13853848--13853920	33	2.2	34	85	2	103	50	1	8	39	1.41
13855767--13855805	17	2.2	18	86	4	53	23	0	5	71	1.05
13856070--13856114	20	2.3	20	85	7	58	24	0	4	71	1.05
13856294--13856351	7	7.6	8	78	19	54	12	8	0	79	0.94
13856294--13856349	15	3.7	16	84	13	66	10	8	0	80	0.91
13858461--13858502	21	2.0	21	100	0	84	52	23	9	14	1.71
13859823--13859878	28	2.0	28	96	0	103	30	3	30	35	1.75
13860547--13861257	355	2.0	355	100	0	1422	24	18	16	40	1.91
13861357--13861730	187	2.0	187	93	0	631	35	13	28	21	1.92
13864952--13864976	5	5.0	5	100	0	50	60	20	20	0	1.37
13873943--13873996	24	2.2	24	100	0	108	14	16	20	48	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13883477--13883616	27	5.3	27	72	8	99	30	20	37	11	1.88
13883477--13883624	51	2.8	53	78	6	156	31	20	37	10	1.87
13883467--13883613	78	1.9	78	80	2	170	29	21	37	11	1.89
13884403--13884439	13	2.9	13	92	4	58	37	10	0	51	1.37
13884961--13885010	20	2.5	21	77	9	59	58	4	0	38	1.17
13889225--13889266	14	2.9	15	89	6	61	50	0	0	50	1.00
13889231--13889268	15	2.4	16	83	16	53	50	0	0	50	1.00
13891072--13891099	12	2.3	12	100	0	56	71	7	0	21	1.09
13891683--13891747	27	2.4	28	74	10	71	46	4	1	47	1.32
13891915--13891950	2	18.0	2	100	0	72	50	0	0	50	1.00
13892115--13892160	23	2.0	22	83	4	56	50	6	0	43	1.28
13892261--13892344	29	2.9	29	77	13	77	47	0	3	48	1.19
13894917--13894984	32	2.1	31	82	15	77	42	0	4	52	1.21
13895258--13895304	19	2.5	19	89	6	69	34	10	4	51	1.56
13896192--13896226	14	2.4	14	90	4	52	31	0	5	62	1.18
13907661--13907692	16	2.0	16	93	0	55	78	0	0	21	0.76
13919156--13919186	15	2.1	15	93	0	53	90	0	9	0	0.46
13919156--13919189	18	1.9	17	88	5	50	88	0	11	0	0.52
13929373--13929442	28	2.4	30	83	7	90	41	1	1	55	1.17
13929890--13929940	12	4.2	12	82	9	68	29	1	0	68	1.00
13935141--13935165	3	8.3	3	100	0	50	32	0	0	68	0.90
13935863--13935901	2	20.0	2	94	5	71	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13942356--13942394	19	2.1	18	85	4	51	5	33	0	61	1.18
13950206--13950399	58	3.4	57	85	5	268	39	5	4	51	1.43
13950548--13950615	34	2.0	34	91	0	109	25	25	25	25	2.00
13958039--13958072	10	3.4	10	91	0	59	20	2	8	67	1.31
13958032--13958072	20	2.0	20	95	0	73	24	4	7	63	1.40
13958376--13958426	24	2.1	24	100	0	102	47	11	17	23	1.81
13964550--13965296	57	12.7	57	82	10	794	34	12	7	46	1.69
13965015--13965106	28	3.1	28	63	19	69	35	16	6	41	1.74
13965141--13965230	27	3.2	27	65	20	76	36	12	6	44	1.68
13964600--13965328	183	4.1	182	82	10	823	34	11	7	46	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120