genome.fa.s146.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  118  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18344368--18344663	119	2.5	117	88	3	439	45	4	10	39	1.59
18344556--18344600	19	2.5	18	85	7	56	53	6	0	40	1.27
18346743--18346773	14	2.3	14	94	5	55	6	29	9	54	1.57
18349274--18349307	2	17.0	2	87	0	50	50	5	0	44	1.26
18366694--18366789	37	2.7	33	72	18	77	45	0	0	54	0.99
18369899--18369929	3	10.7	3	93	6	55	0	32	0	67	0.91
18374759--18374802	11	3.8	11	85	8	61	75	0	0	25	0.81
18396846--18396888	2	21.5	2	100	0	86	48	0	51	0	1.00
18400524--18400578	27	2.0	28	82	13	69	40	3	3	52	1.36
18407014--18407050	2	18.5	2	91	0	56	43	0	2	54	1.14
18410630--18410664	2	17.5	2	87	0	52	48	0	2	48	1.16
18411069--18411108	2	21.0	2	90	10	66	47	0	0	52	1.00
18418938--18418966	2	14.5	2	100	0	58	51	48	0	0	1.00
18436314--18436344	2	15.0	2	93	6	53	48	3	0	48	1.17
18436613--18436644	2	16.0	2	100	0	64	50	0	0	50	1.00
18438354--18438599	123	2.0	123	98	0	474	37	15	16	30	1.89
18445190--18445224	2	18.0	2	94	5	63	48	0	0	51	1.00
18447301--18447341	19	2.2	18	86	8	55	26	4	0	68	1.10
18447408--18447465	30	1.9	30	96	0	107	24	8	5	62	1.45
18447407--18447472	30	2.2	29	89	7	105	21	7	7	63	1.45
18447420--18447728	106	3.0	100	89	7	457	23	8	13	54	1.65
18447616--18447679	34	2.0	34	85	11	91	18	6	9	65	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18448033--18448065	13	2.4	14	90	5	50	39	9	9	42	1.68
18474036--18474068	9	3.7	9	91	0	57	48	0	0	51	1.00
18474063--18474114	20	2.5	20	84	9	70	51	1	1	44	1.23
18474734--18474796	25	2.5	25	76	2	63	53	0	0	46	1.00
18474749--18474798	25	2.0	25	84	3	66	52	0	0	48	1.00
18474814--18474846	17	1.9	17	93	0	57	45	0	6	48	1.27
18474779--18474859	28	2.9	27	71	16	67	44	0	2	53	1.14
18474784--18474868	25	3.0	27	71	23	77	44	0	3	51	1.18
18474965--18474994	2	15.5	2	93	6	53	50	0	0	50	1.00
18485072--18485100	2	14.5	2	100	0	58	48	0	0	51	1.00
18485326--18485382	25	2.1	27	84	9	73	61	7	14	17	1.54
18486541--18486583	17	2.6	16	82	7	59	2	23	0	74	0.93
18504676--18504766	42	2.2	43	79	16	102	52	1	2	43	1.20
18505891--18506280	190	2.0	187	85	8	521	44	3	8	43	1.51
18506932--18506966	3	11.7	3	93	0	61	34	28	0	37	1.58
18518487--18518516	15	2.0	15	93	0	51	50	0	0	50	1.00
18518544--18518580	10	3.7	10	88	0	56	21	0	0	78	0.75
18519652--18519682	16	1.9	16	93	0	53	54	6	12	25	1.62
18528043--18528074	11	3.0	11	95	4	57	43	0	0	56	0.99
18528044--18528075	10	3.1	10	95	4	55	40	0	0	59	0.97
18528169--18528254	35	2.5	36	77	21	103	53	2	3	40	1.31
18528232--18528278	16	2.9	16	78	9	51	48	0	2	48	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18528221--18528282	17	3.8	16	75	16	56	51	0	1	46	1.10
18528534--18528587	23	2.3	21	77	20	54	53	0	1	44	1.11
18529859--18529919	20	3.0	20	65	9	52	40	6	3	49	1.45
18530636--18530693	28	2.0	29	83	3	73	43	3	0	53	1.17
18530636--18530702	28	2.4	28	80	5	64	43	5	0	50	1.26
18535303--18535354	22	2.4	22	78	9	54	50	1	0	48	1.12
18536105--18536142	17	2.2	17	86	9	51	60	10	10	18	1.57
18537430--18537466	15	2.5	15	95	0	65	40	27	2	29	1.70
18537575--18537642	24	2.8	24	84	6	84	51	2	0	45	1.16
18537568--18537625	18	3.4	17	79	11	57	51	0	0	48	1.00
18538078--18538104	13	2.1	13	100	0	54	7	37	0	55	1.28
18539862--18539893	12	2.6	13	85	14	50	65	0	0	34	0.93
18541559--18541650	21	4.5	21	67	17	59	58	2	0	39	1.10
18541704--18541755	22	2.3	23	90	6	79	51	0	0	48	1.00
18545094--18545118	12	2.1	12	100	0	50	0	0	8	92	0.40
18554197--18554280	37	2.3	37	93	0	141	34	9	15	40	1.80
18556321--18556740	58	7.0	58	78	12	304	37	11	4	46	1.62
18556480--18556515	18	1.9	19	88	5	56	41	8	8	41	1.65
18556484--18556726	127	1.9	127	86	2	346	37	11	4	47	1.60
18563581--18563611	7	4.4	7	100	0	62	16	54	29	0	1.42
18569636--18570267	314	2.0	314	99	0	1246	38	16	21	23	1.93
18573806--18573846	21	2.0	20	85	4	55	43	2	2	51	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18575138--18575192	21	2.6	21	75	18	60	52	3	0	43	1.18
18577555--18577581	2	13.5	2	100	0	54	0	51	0	48	1.00
18584328--18584435	29	3.7	30	76	8	89	51	3	6	37	1.45
18584346--18584432	29	3.0	29	74	17	90	50	4	6	37	1.50
18586664--18586793	54	2.4	54	83	2	154	44	4	44	6	1.49
18588363--18588427	2	34.5	2	77	11	66	40	0	3	56	1.15
18588360--18588430	14	4.9	14	76	17	74	39	0	2	57	1.13
18600071--18600462	195	2.0	195	93	1	678	29	18	13	38	1.89
18609064--18609126	10	6.6	10	75	12	53	31	1	0	66	1.01
18609066--18609187	29	4.5	28	74	19	80	33	3	0	63	1.11
18609064--18609182	27	4.7	24	73	18	82	33	3	0	63	1.11
18609070--18609192	8	15.7	7	72	18	52	33	4	0	62	1.14
18610049--18610205	60	2.6	59	76	9	140	45	5	10	39	1.60
18610207--18610367	60	2.7	58	82	6	198	50	5	9	34	1.58
18621869--18622121	41	6.1	41	78	10	275	25	11	19	42	1.86
18621876--18622194	41	7.6	41	78	11	265	24	11	19	44	1.83
18621876--18622141	83	3.2	81	88	5	340	25	11	18	45	1.82
18622180--18622209	15	2.0	15	93	0	51	30	26	23	20	1.98
18622135--18622254	59	2.0	60	90	1	188	23	15	21	40	1.91
18622195--18622317	45	2.7	45	89	0	183	21	14	21	41	1.89
18622531--18622565	13	2.8	13	95	4	63	17	0	8	74	1.06
18622584--18622688	24	4.5	24	85	5	135	32	3	0	62	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18622970--18622998	14	2.0	15	93	6	51	17	0	13	68	1.20
18623077--18623119	20	2.2	20	95	0	77	16	13	11	58	1.64
18623469--18623495	4	6.8	4	100	0	54	25	0	0	74	0.83
18623598--18623760	59	2.7	59	85	8	231	46	4	13	35	1.65
18623775--18623950	58	3.0	57	81	8	203	48	4	9	37	1.55
18623792--18623950	60	2.7	58	89	1	237	49	4	9	36	1.55
18639187--18639218	2	16.0	2	100	0	64	50	0	0	50	1.00
18664794--18664861	27	2.4	29	87	4	95	47	0	1	51	1.09
18666860--18666925	24	2.9	24	80	8	84	33	0	0	66	0.92
18666888--18666952	24	2.7	24	83	7	69	33	1	1	63	1.13
18667313--18667764	219	2.1	219	98	0	868	43	9	5	41	1.61
18668409--18668433	1	25.0	1	100	0	50	0	0	0	100	0.00
18688486--18688811	27	12.3	27	73	12	132	11	19	37	31	1.87
18688536--18688714	27	6.4	29	82	8	135	8	20	37	33	1.84
18688588--18688739	57	2.7	57	84	6	184	9	21	36	32	1.85
18688588--18688738	30	5.2	30	80	10	156	9	20	37	33	1.85
18688776--18688948	9	20.2	9	65	20	59	8	20	34	36	1.83
18688548--18688913	24	14.0	27	79	12	218	10	20	36	32	1.87
18688802--18688922	54	2.4	50	86	8	156	9	21	33	35	1.85
18697269--18697294	10	2.6	10	100	0	52	26	0	38	34	1.57
18699950--18700090	75	1.9	75	93	0	246	25	14	28	31	1.94
18709980--18710019	2	20.0	2	89	0	62	50	5	45	0	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18710089--18710124	18	2.0	18	94	0	63	5	36	5	52	1.48
18710538--18710593	20	2.7	20	86	5	67	57	0	0	42	0.99
18711299--18711343	20	2.2	20	80	7	56	44	0	0	55	0.99
18715439--18715479	22	1.9	21	90	5	64	43	2	9	43	1.50
18719312--18719343	14	2.3	14	94	0	55	78	0	9	12	0.97
18721572--18721602	16	1.9	16	93	0	53	87	6	6	0	0.68
18722300--18722331	3	10.7	3	100	0	64	31	0	0	68	0.90
18722916--18722942	5	5.4	5	100	0	54	0	0	37	62	0.95
18724032--18724057	1	26.0	1	100	0	52	0	0	0	100	0.00
18724651--18724679	1	29.0	1	100	0	58	0	100	0	0	0.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120