genome.fa.s146.2.7.7.80.10.50.1000.109.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  109  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15832682--15832715	17	2.0	17	88	0	50	82	0	0	17	0.67
15836719--15836780	20	3.2	20	76	4	54	72	0	17	9	1.10
15838047--15838086	21	1.9	21	85	10	55	37	7	12	42	1.71
15838082--15838247	80	2.1	80	85	4	219	38	10	15	34	1.83
15838527--15838580	27	1.9	29	92	7	94	27	7	22	42	1.80
15838492--15838622	69	1.9	69	93	0	226	23	7	22	46	1.77
15838560--15838805	42	6.0	40	85	3	285	23	9	21	45	1.81
15838554--15838799	82	3.0	81	88	4	325	23	10	20	45	1.81
15839399--15839436	16	2.5	15	84	16	51	81	0	2	15	0.80
15839988--15840164	57	3.1	56	75	13	139	57	7	9	25	1.58
15848773--15848840	32	2.1	32	97	0	127	36	4	14	44	1.66
15857535--15857560	5	5.2	5	100	0	52	0	61	0	38	0.96
15860665--15860695	2	15.5	2	100	0	62	51	0	0	48	1.00
15871841--15871867	2	13.5	2	100	0	54	51	0	0	48	1.00
15872599--15872633	16	2.2	16	100	0	70	14	11	40	34	1.82
15880978--15881038	30	2.1	29	84	3	77	34	11	1	52	1.47
15881447--15881505	29	2.1	28	83	3	73	44	1	1	52	1.21
15881491--15881533	15	2.9	15	76	13	52	46	0	0	53	1.00
15886500--15886563	22	2.8	22	72	15	58	42	0	1	56	1.09
15890186--15890225	20	2.0	20	90	0	62	42	2	2	52	1.28
15890570--15890612	17	2.5	17	80	3	50	69	0	4	25	1.07
15891609--15891654	19	2.3	21	85	7	60	54	0	2	43	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15895726--15895772	16	2.7	18	80	9	62	36	0	0	63	0.94
15898467--15898551	29	2.9	29	80	3	98	41	7	1	50	1.37
15898468--15898597	30	4.4	28	73	16	93	39	7	0	52	1.36
15900609--15900645	2	18.5	2	100	0	74	48	0	0	51	1.00
15902325--15902367	21	2.0	21	86	0	59	51	0	2	46	1.13
15908890--15908952	22	2.8	23	90	7	94	50	1	0	47	1.10
15908913--15908981	35	2.0	35	85	5	95	50	1	0	47	1.09
15909034--15909104	36	1.9	36	86	8	99	47	0	0	52	1.00
15909072--15909112	16	2.7	15	85	7	55	48	2	0	48	1.14
15909082--15909147	26	2.6	26	81	9	82	48	3	0	48	1.17
15909683--15909741	20	2.9	21	75	10	59	35	8	1	54	1.41
15915932--15915964	17	1.9	17	88	11	50	39	0	6	54	1.25
15927479--15927545	28	2.5	27	81	15	77	58	1	7	32	1.35
15929518--15929567	18	2.7	18	76	11	57	46	0	6	48	1.27
15930643--15930713	30	2.4	29	88	4	97	40	2	4	52	1.36
15935810--15935843	2	17.0	2	87	0	50	55	0	0	44	0.99
15937541--15937581	22	1.9	22	85	5	57	60	0	9	29	1.28
15938147--15938302	52	3.0	52	84	3	190	27	23	8	40	1.83
15938328--15938366	11	3.5	11	89	0	60	53	28	0	17	1.44
15940624--15940666	22	2.0	22	85	0	59	41	0	2	55	1.12
15941003--15941132	37	3.4	37	74	10	93	42	0	2	55	1.12
15941444--15941473	8	3.8	8	100	0	60	80	0	0	20	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15946388--15946438	25	2.0	25	100	0	102	45	3	3	47	1.40
15950965--15951007	20	2.0	22	86	8	63	58	0	0	41	0.98
15950965--15951011	22	2.1	22	84	7	60	55	0	0	44	0.99
15956223--15956276	28	1.9	28	96	0	99	29	5	1	62	1.28
15956559--15956592	12	2.9	12	91	4	52	55	0	0	44	0.99
15957568--15957616	25	2.0	25	88	8	73	40	4	8	46	1.52
15959734--15959761	7	4.0	7	100	0	56	28	0	28	42	1.56
15959944--15959987	19	2.5	17	77	7	52	47	2	2	47	1.27
15963892--15964042	70	2.1	72	85	6	198	41	4	2	51	1.36
15964380--15964434	18	2.7	20	73	18	51	49	0	1	49	1.11
15977386--15977410	13	1.9	13	100	0	50	20	8	0	72	1.10
15992041--15992147	31	3.6	29	67	20	78	53	3	2	40	1.33
15996201--15996260	24	2.5	24	77	15	70	68	0	3	28	1.05
15996199--15996257	26	2.3	26	85	5	75	64	0	3	32	1.10
15996310--15996376	33	2.0	33	85	0	89	44	5	4	44	1.48
15996321--15996402	33	2.5	33	84	9	105	48	6	0	45	1.27
15998293--15998695	120	3.3	120	78	6	395	34	10	6	48	1.63
15998474--15998709	63	3.9	60	76	12	207	36	10	7	46	1.65
15998293--15998760	62	7.6	63	75	9	332	34	10	6	48	1.63
15999931--16000246	86	3.7	85	82	2	346	43	14	19	22	1.88
15999932--16000252	172	1.9	171	84	2	439	43	14	19	22	1.87
16008243--16008279	15	2.5	15	86	0	56	54	5	21	18	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16010444--16010469	4	6.5	4	100	0	52	53	0	0	46	1.00
16011520--16011552	15	2.2	15	89	10	50	45	3	0	51	1.16
16011586--16012064	118	3.9	123	81	9	446	35	11	6	46	1.66
16011586--16012064	63	7.8	59	76	13	377	35	11	6	46	1.66
16011732--16012066	180	1.9	176	84	6	451	37	11	6	44	1.67
16013358--16013391	15	2.3	15	94	0	59	47	17	14	20	1.83
16013509--16013551	22	2.0	22	95	0	77	65	13	0	20	1.27
16024792--16024894	29	3.5	28	77	16	86	61	0	2	34	1.18
16025556--16025603	11	4.2	11	79	10	51	64	0	4	31	1.12
16032120--16032153	2	17.0	2	87	0	50	55	0	0	44	0.99
16034925--16034958	14	2.4	15	90	9	54	23	0	2	73	0.97
16039379--16039583	102	2.0	103	96	0	376	37	17	19	25	1.94
16044323--16044373	26	2.0	26	96	0	93	50	13	21	13	1.76
16046298--16046453	79	2.0	79	97	0	294	26	12	25	35	1.92
16049606--16049644	5	7.8	5	82	0	51	2	33	0	64	1.08
16051850--16051874	7	3.6	7	100	0	50	88	0	12	0	0.53
16055015--16055057	12	3.6	12	83	0	59	20	4	39	34	1.74
16056977--16057137	55	2.9	55	82	2	160	45	5	4	43	1.49
16057116--16057184	31	2.1	33	84	13	97	47	10	0	42	1.37
16057125--16057184	31	1.9	32	93	3	104	43	8	0	48	1.33
16060487--16060593	56	1.9	56	92	3	180	37	16	14	31	1.89
16065519--16065579	30	2.1	29	82	11	72	62	3	3	31	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16065646--16065716	36	2.0	36	91	0	115	28	22	11	38	1.88
16066174--16066223	15	3.2	16	77	11	50	50	2	2	46	1.24
16067347--16067424	29	2.9	27	80	15	83	39	1	1	57	1.15
16068295--16068319	5	5.0	5	100	0	50	80	0	20	0	0.72
16085920--16085945	2	13.0	2	100	0	52	50	0	0	50	1.00
16086587--16086627	16	2.4	18	76	12	50	60	0	0	39	0.96
16089472--16089932	59	7.7	56	83	12	491	33	13	7	45	1.72
16089718--16089936	112	1.9	114	92	5	374	32	13	7	46	1.70
16090395--16090432	20	1.9	20	94	0	67	23	18	26	31	1.97
16090396--16090440	20	2.3	20	88	3	65	26	22	24	26	2.00
16090473--16090544	31	2.3	31	87	0	99	25	23	23	27	2.00
16090553--16090606	25	2.2	24	83	6	63	40	18	5	35	1.74
16093504--16093573	28	2.5	27	77	11	79	38	5	1	54	1.33
16099053--16099092	21	1.9	21	84	0	53	45	5	2	47	1.38
16100949--16101087	70	2.0	70	92	2	235	41	20	7	30	1.79
16104005--16104066	30	2.1	30	93	0	106	46	19	9	24	1.79
16105655--16106113	155	3.0	151	88	7	658	37	17	15	29	1.91
16106125--16106177	8	5.8	10	91	8	55	90	1	0	7	0.52
16106123--16106177	21	2.8	21	86	8	71	87	3	0	9	0.66
16106146--16106177	1	32.0	1	100	0	64	100	0	0	0	0.00
16106503--16106548	19	2.3	20	88	3	67	23	19	32	23	1.97
16106572--16106612	19	2.1	19	86	4	55	17	24	34	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16106601--16106670	31	2.3	31	87	7	106	25	24	24	25	2.00
16107097--16107130	3	11.7	3	93	6	61	70	0	0	29	0.87
16107797--16107838	21	2.0	21	81	9	50	30	7	28	33	1.84
16108415--16108458	19	2.3	19	84	0	61	72	13	2	11	1.21
16109248--16109317	3	23.7	3	83	11	74	62	0	2	34	1.10
16109387--16109441	9	6.2	9	79	8	60	72	0	3	23	1.00
16109388--16109441	17	3.1	17	83	2	63	72	0	3	24	1.01
16109410--16109458	20	2.4	20	83	10	55	69	0	6	24	1.11
16109772--16109816	24	1.9	23	86	4	63	57	11	0	31	1.33
16109480--16109855	203	1.9	201	79	6	429	47	8	8	35	1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120