genome.fa.s146.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  13  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1397341--1397554	45	4.8	44	75	8	166	19	34	28	17	1.95
1397340--1397554	89	2.4	90	83	6	258	19	33	28	18	1.95
1397996--1398048	26	2.0	26	96	0	97	28	16	24	30	1.97
1398645--1398697	26	2.0	26	92	7	90	28	20	22	28	1.99
1398488--1398850	196	1.9	195	81	1	449	23	32	25	19	1.97
1399289--1399313	13	1.9	13	100	0	50	24	16	36	24	1.94
1399356--1399513	45	3.5	45	80	1	192	20	34	27	17	1.95
1399956--1400008	26	2.0	26	92	0	88	28	18	24	28	1.98
1400709--1400759	26	2.0	26	88	0	75	27	17	27	27	1.98
1401063--1401139	26	3.0	26	90	0	118	24	19	27	28	1.99
1402082--1402211	45	2.9	44	78	7	136	18	28	31	21	1.97
1402693--1402742	26	1.9	26	91	0	82	36	20	22	22	1.96
1403171--1403223	26	2.0	26	92	0	88	26	20	26	26	1.99
1404168--1404369	45	4.5	45	73	6	167	20	32	27	19	1.97
1404811--1404863	26	2.0	26	85	0	70	33	20	20	24	1.97
1406080--1406135	23	2.4	23	87	0	85	25	14	37	23	1.92
1409974--1410181	106	2.0	106	94	0	362	21	28	22	26	1.99
1411995--1412046	26	2.0	26	81	7	61	25	15	26	32	1.95
1412979--1413112	45	3.0	45	82	6	164	17	36	27	17	1.93
1412940--1413141	90	2.2	90	81	6	223	19	34	27	19	1.96
1412979--1413143	90	1.8	90	85	5	235	18	35	28	17	1.94
1412984--1413189	45	4.6	45	76	6	150	17	33	29	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1412978--1413186	90	2.3	90	80	3	224	18	33	29	18	1.94
1413628--1413680	26	2.0	26	89	7	81	28	16	28	26	1.97
1414490--1414643	45	3.4	45	80	1	175	14	32	33	19	1.92
1416146--1416198	26	2.0	26	85	7	72	26	16	28	28	1.97
1416502--1416554	26	2.0	26	88	0	79	26	20	28	24	1.99
1417496--1417652	45	3.5	44	76	8	147	18	31	28	21	1.97
1417496--1417622	44	2.8	45	80	7	134	18	31	29	20	1.96
1418434--1418486	26	2.0	26	88	0	79	26	18	26	28	1.98
1420223--1420275	26	2.0	26	92	0	88	24	18	28	28	1.98
1421181--1421338	45	3.5	45	78	0	136	16	31	31	21	1.95
1422062--1422114	26	2.0	26	92	0	88	24	18	28	28	1.98
1425802--1425843	12	3.5	12	75	12	50	4	35	28	30	1.78
1425792--1425843	24	2.2	24	100	0	104	7	32	28	30	1.85
1425869--1425921	26	2.0	26	86	13	74	26	16	26	30	1.97
1426825--1426940	45	2.6	45	80	2	126	18	33	28	19	1.95
1426868--1427022	45	3.5	44	76	7	141	18	31	30	20	1.96
1428840--1429034	45	4.3	45	77	5	169	22	30	26	20	1.98
1429483--1429535	26	2.0	26	92	0	88	28	20	24	26	1.99
1430723--1430892	45	3.8	45	82	0	187	16	31	33	18	1.93
1431518--1432091	195	2.9	193	82	5	602	22	28	26	21	1.99
1431884--1431936	26	2.0	26	92	0	88	24	16	26	32	1.97
1432835--1433039	90	2.3	90	79	6	220	19	33	26	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1432879--1433081	90	2.3	90	79	8	216	19	32	28	20	1.97
1432879--1433084	45	4.6	46	76	3	186	18	32	28	20	1.97
1437695--1437748	26	2.1	26	89	0	81	22	22	24	31	1.98
1438188--1438432	45	5.5	44	77	6	233	20	28	33	18	1.96
1438190--1438432	135	1.8	135	82	5	321	19	28	33	18	1.96
1438188--1438467	135	2.1	136	80	6	311	20	29	31	18	1.97
1439315--1439367	26	2.0	26	92	0	88	28	26	20	24	1.99
1439512--1439589	26	3.0	25	87	5	102	26	25	20	26	1.99
1439315--1439761	222	2.0	223	84	1	592	22	28	27	21	1.99
1440456--1440593	45	3.1	44	75	10	136	22	27	31	18	1.97
1441487--1441539	26	2.0	26	88	0	79	33	28	13	24	1.93
1441843--1441895	26	2.0	26	96	0	97	32	26	15	26	1.95
1442336--1442442	45	2.4	45	83	0	133	16	30	30	21	1.96
1443098--1443150	26	2.0	26	96	0	97	26	24	20	28	1.99
1443587--1443767	45	4.0	45	79	1	184	19	32	33	15	1.93
1443587--1443767	90	2.0	90	82	4	222	19	32	33	15	1.93
1444790--1444976	45	4.2	45	82	1	187	19	30	34	15	1.93
1444790--1444976	90	2.1	90	83	4	234	19	30	34	15	1.93
1444814--1445032	45	4.9	45	79	6	203	19	30	33	16	1.94
1446648--1446843	45	4.4	44	77	6	160	20	31	31	17	1.95
1446648--1446871	90	2.5	90	81	5	256	20	31	31	17	1.95
1447785--1447837	26	2.0	26	96	0	97	30	28	16	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1448806--1448830	13	1.9	13	100	0	50	24	44	16	16	1.86
1449531--1449588	26	2.2	27	84	6	82	29	27	17	25	1.97
1449891--1449943	26	2.0	26	89	7	81	30	22	15	32	1.94
1450383--1450433	26	2.0	26	88	7	77	27	27	17	27	1.98
1450508--1450659	45	3.4	44	77	3	153	22	30	30	17	1.96
1450702--1450726	13	1.9	13	100	0	50	24	36	16	24	1.94
1451592--1451644	26	2.0	26	89	7	81	24	28	24	22	2.00
1451858--1452109	136	1.9	136	83	1	335	19	28	27	25	1.98
1453389--1453441	26	2.0	26	92	0	88	26	26	20	26	1.99
1460135--1460264	45	2.9	45	82	1	136	16	30	34	19	1.93
1461236--1461288	26	2.0	26	88	0	79	28	26	18	26	1.98
1462059--1462167	45	2.4	45	82	7	116	16	27	33	22	1.96
1462213--1462237	13	1.9	13	100	0	50	24	36	16	24	1.94
1463115--1463164	26	1.9	26	91	0	82	24	28	22	26	1.99
1464241--1464292	26	2.0	26	92	0	86	26	26	19	26	1.99
1469615--1469767	45	3.4	45	80	3	173	16	33	32	16	1.92
1470760--1470812	26	2.0	26	96	0	97	28	26	18	26	1.98
1471226--1471428	45	4.5	44	74	4	174	19	30	32	17	1.95
1471234--1471431	90	2.2	90	80	5	213	20	30	31	17	1.95
1472729--1472779	26	2.0	26	96	0	93	25	27	17	29	1.98
1473277--1473425	45	3.3	44	77	4	138	16	25	34	24	1.95
1474383--1474435	26	2.0	26	85	0	70	32	28	15	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1475181--1475360	45	4.0	45	71	0	144	21	30	30	17	1.96
1477127--1477277	45	3.4	44	75	1	140	17	29	31	21	1.96
1477130--1477329	90	2.2	90	81	1	213	19	31	30	19	1.96
1483664--1483934	148	1.8	148	82	1	346	19	27	28	23	1.99
1484241--1484431	45	4.2	44	73	10	138	17	27	34	20	1.95
1484241--1484443	90	2.3	89	80	3	219	18	27	33	19	1.96
1485386--1485438	26	2.0	26	92	0	88	24	28	20	26	1.99
1485497--1485916	159	2.6	159	87	0	563	18	28	30	22	1.97
1485899--1485977	26	3.0	26	84	0	113	30	27	16	25	1.97
1486473--1486588	45	2.6	45	78	0	124	21	25	31	20	1.98
1491198--1491429	45	5.2	45	74	6	202	19	27	33	19	1.96
1491173--1491421	90	2.8	90	78	6	245	20	28	32	18	1.96
1492200--1492584	196	2.0	196	84	3	515	21	25	28	23	1.99
1492531--1492582	26	2.0	26	92	0	86	28	26	19	25	1.98
1492185--1492659	196	2.4	197	78	9	506	23	25	28	22	1.99
1494032--1494084	26	2.0	26	88	0	79	33	28	13	24	1.93
1495377--1495429	26	2.0	26	92	0	88	26	26	20	26	1.99
1495733--1495785	26	2.0	26	92	0	88	32	26	13	28	1.93
1494889--1495906	518	2.0	518	83	1	1317	21	27	27	23	1.99
1496224--1496380	45	3.5	45	77	2	127	20	26	33	19	1.96
1496224--1496336	45	2.5	46	79	1	129	18	26	34	20	1.96
1496543--1496590	25	1.9	25	86	0	69	25	18	25	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1497018--1497222	45	4.6	45	75	6	200	21	30	29	18	1.97
1497021--1497222	89	2.3	90	83	6	250	21	30	29	18	1.97
1498173--1498251	26	3.0	26	94	0	131	26	25	20	27	1.99
1498695--1498908	45	4.7	46	72	6	143	21	30	30	16	1.96
1498809--1498920	45	2.5	42	78	9	107	24	32	29	14	1.94
1500065--1500113	21	2.4	20	79	3	53	28	22	42	6	1.77
1500504--1500556	26	2.0	26	88	0	79	26	24	20	28	1.99
1502316--1502368	26	2.0	26	96	0	97	26	28	20	24	1.99
1502228--1502541	170	1.8	170	86	2	452	19	28	27	24	1.99
1502483--1502538	26	2.2	26	90	6	87	30	26	16	26	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120