genome.fa.s146.2.7.7.80.10.50.1000.90.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  90  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11909196--11909349	64	2.5	59	77	9	139	31	15	17	35	1.91
11909388--11909657	32	8.4	32	69	8	172	29	13	17	39	1.88
11909388--11909633	129	1.9	129	81	7	295	28	13	17	40	1.88
11909665--11909841	32	5.5	32	77	7	153	29	10	19	40	1.86
11909703--11909885	63	2.9	63	85	4	224	29	12	19	39	1.87
11909931--11910201	32	8.5	32	73	8	149	25	12	20	41	1.87
11909990--11910199	95	2.2	96	79	8	230	27	11	20	40	1.87
11909894--11910201	64	4.8	64	74	9	223	25	12	20	40	1.88
11910151--11910238	36	2.6	35	85	7	110	29	11	18	40	1.85
11911379--11911432	26	2.1	26	100	0	108	44	7	14	33	1.73
11912874--11912932	27	2.2	26	76	5	64	22	18	15	44	1.87
11915054--11915203	49	3.0	49	82	4	176	55	6	12	25	1.61
11919904--11920191	79	3.8	73	83	5	297	36	7	23	31	1.84
11919904--11920191	152	1.9	152	84	1	389	36	7	23	31	1.84
11920563--11920630	33	2.1	33	88	0	100	25	13	25	36	1.92
11920930--11921202	43	6.3	43	81	2	294	27	13	16	43	1.84
11920943--11921170	87	2.6	86	88	2	339	26	14	13	45	1.82
11922186--11922242	21	2.8	19	76	19	53	17	1	3	77	1.00
11922186--11922236	4	12.8	4	78	15	52	17	1	3	76	1.03
11922678--11922780	48	2.1	48	82	7	120	55	5	13	25	1.60
11922831--11922860	14	2.2	13	94	5	51	80	0	3	16	0.85
11922983--11923025	14	2.9	16	86	10	56	51	9	4	34	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11922988--11923048	23	2.7	23	75	14	63	54	6	4	34	1.48
11924773--11924805	15	2.2	15	94	0	57	78	0	3	18	0.87
11924774--11924808	18	2.0	17	94	5	61	80	0	2	17	0.84
11925340--11925372	2	17.0	2	90	6	50	45	0	3	51	1.16
11926759--11926853	46	2.1	46	85	0	127	32	12	14	40	1.84
11930308--11930337	14	2.1	14	100	0	60	73	0	0	26	0.84
11930909--11930941	16	2.0	17	94	5	59	57	0	0	42	0.98
11931535--11931626	19	4.8	19	72	9	80	19	5	25	50	1.69
11931482--11931612	57	2.3	56	81	6	147	20	9	25	43	1.83
11931535--11931612	18	4.2	19	73	14	63	19	5	26	48	1.69
11931544--11931626	38	2.2	38	88	0	121	19	4	26	49	1.68
11931851--11931927	32	2.5	30	79	10	77	37	2	0	59	1.11
11932856--11932929	29	2.5	31	76	10	82	1	16	6	75	1.08
11937438--11937499	29	2.1	29	90	0	97	30	19	16	33	1.94
11944089--11944128	18	2.2	19	86	4	55	57	0	2	40	1.12
11944207--11944253	20	2.4	19	82	10	58	53	4	2	40	1.32
11944215--11944276	18	3.4	18	72	14	56	61	4	1	32	1.27
11944216--11944287	36	2.0	36	83	8	92	61	4	2	31	1.29
11944424--11944461	20	1.9	19	94	5	67	52	7	2	36	1.45
11944425--11944469	20	2.3	20	88	3	65	60	6	2	31	1.35
11944591--11944667	10	7.8	10	71	12	52	31	2	3	62	1.27
11944604--11944869	10	29.0	9	67	18	72	34	2	3	59	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11944583--11944704	38	3.4	36	77	11	90	29	2	4	63	1.25
11944601--11944672	28	2.6	26	76	12	72	29	1	4	65	1.20
11944661--11944721	24	2.5	25	82	15	74	26	1	3	68	1.14
11944659--11944726	26	2.6	24	78	19	66	29	1	2	66	1.15
11944712--11944751	16	2.4	16	87	4	53	25	2	2	70	1.13
11944794--11944863	29	2.6	27	84	11	81	41	2	2	52	1.31
11947655--11947686	2	16.0	2	100	0	64	50	0	0	50	1.00
11965871--11965934	34	1.9	32	84	12	85	71	10	3	14	1.25
11965921--11965951	4	7.8	4	92	0	53	74	0	3	22	0.96
11966363--11966409	18	2.5	18	86	10	60	14	8	2	74	1.15
11968138--11968171	3	11.3	3	100	0	68	32	0	0	67	0.91
11970014--11970048	8	4.4	8	96	0	61	62	22	0	14	1.31
11970183--11970228	17	2.6	19	77	19	55	41	0	0	58	0.98
11971216--11971249	2	17.0	2	100	0	68	50	0	0	50	1.00
11974066--11974098	4	8.8	4	87	12	52	78	0	0	21	0.75
11974065--11974106	18	2.3	19	91	4	68	80	0	0	19	0.70
11974070--11974106	14	2.5	15	86	8	58	81	0	0	18	0.70
11975461--11975509	21	2.5	20	83	9	57	59	0	2	38	1.09
11975448--11975500	21	2.6	21	90	3	72	54	0	1	43	1.11
11975448--11975494	21	2.2	21	96	0	85	55	0	2	42	1.12
11975545--11975582	15	2.5	15	95	0	67	55	2	0	42	1.14
11977510--11977539	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11978525--11978630	24	4.3	24	77	12	108	60	8	4	26	1.46
11978657--11978681	12	2.1	12	100	0	50	0	8	0	92	0.40
11978715--11978761	16	2.9	16	79	17	53	74	12	0	12	1.07
11978766--11978829	24	2.8	24	78	4	78	73	6	1	18	1.12
11980085--11980203	43	2.8	43	84	2	141	42	16	11	29	1.84
11980175--11980281	41	2.6	41	89	1	151	46	13	11	28	1.77
11983438--11983487	25	2.0	25	88	0	73	32	14	16	38	1.88
11989769--11989805	17	2.1	19	85	10	51	64	13	0	21	1.27
11989781--11989831	25	2.2	22	86	10	66	68	7	1	21	1.25
11990108--11990144	19	1.9	19	88	0	56	0	16	2	81	0.81
11990213--11990260	16	3.1	15	85	11	62	2	18	0	79	0.84
11990215--11990259	19	2.5	17	89	7	63	2	15	0	82	0.77
11990221--11990264	16	2.9	15	93	6	72	4	13	0	81	0.83
11990289--11990341	20	2.6	20	82	11	63	5	15	0	79	0.91
11990292--11990345	21	2.5	20	82	11	63	5	18	0	75	0.98
11991413--11991447	14	2.5	14	85	0	52	11	0	11	77	1.00
11991470--11991602	45	3.0	44	74	9	133	40	20	11	27	1.86
11991809--11991854	23	2.0	23	86	0	65	23	8	32	34	1.86
11992398--11992439	17	2.4	18	84	15	61	16	14	2	66	1.35
11994276--11994335	18	3.4	17	73	24	61	1	16	1	80	0.89
11994273--11994335	31	2.0	31	84	6	83	3	17	1	77	0.97
11994280--11994331	10	5.1	10	74	4	50	1	15	1	80	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12003738--12003771	16	2.1	16	88	0	50	58	17	2	20	1.51
12009543--12009577	12	2.8	12	86	4	52	74	2	8	14	1.17
12011878--12011922	16	2.6	17	86	6	56	6	24	0	68	1.13
12011943--12012005	16	3.9	15	77	20	58	4	23	0	71	1.05
12011945--12012009	19	3.6	18	78	13	62	4	21	0	73	1.00
12012070--12012101	13	2.5	13	100	0	64	0	25	6	68	1.12
12015546--12015600	20	2.7	21	88	8	87	58	9	3	29	1.46
12015823--12015876	16	3.4	15	76	20	56	18	0	3	77	0.91
12015822--12015881	5	11.0	5	74	22	50	20	0	3	76	0.92
12015823--12015882	12	5.4	11	80	15	61	18	0	3	78	0.89
12015947--12015979	17	1.9	18	88	11	52	3	21	0	75	0.93
12015984--12016046	16	3.6	17	76	17	58	22	3	4	69	1.21
12015998--12016116	20	5.9	20	67	11	64	23	5	3	67	1.28
12016931--12016994	4	15.8	4	86	3	92	20	0	3	76	0.92
12017029--12017071	17	2.5	17	81	7	52	11	2	4	81	0.93
12017092--12017307	61	3.7	56	86	9	299	43	7	12	36	1.71
12017087--12017307	118	1.9	117	92	4	372	44	8	11	35	1.71
12019635--12019736	48	2.2	46	85	3	132	25	4	3	65	1.30
12019714--12019758	19	2.4	19	88	7	65	22	4	0	73	1.01
12020571--12020636	12	5.8	11	79	15	57	18	0	3	78	0.87
12020572--12020636	21	3.1	22	80	10	73	18	0	3	78	0.88
12020585--12020636	25	2.1	25	89	7	79	19	0	3	76	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12020581--12020636	4	13.8	4	81	10	69	19	0	3	76	0.93
12020657--12020690	17	2.0	17	88	0	50	14	2	2	79	0.97
12020886--12021017	52	2.5	52	86	1	174	38	7	26	27	1.83
12021503--12021586	31	2.7	30	89	5	123	26	15	27	30	1.96
12021924--12021965	11	3.8	12	78	15	54	23	0	23	52	1.47
12021926--12021968	22	2.0	22	90	9	70	25	0	23	51	1.49
12022013--12022144	52	2.5	52	86	0	174	41	6	23	28	1.78
12022631--12022712	31	2.7	31	90	1	121	26	14	28	30	1.95
12022755--12022808	25	2.2	25	82	0	63	35	9	35	20	1.85
12022766--12022825	25	2.5	24	83	5	77	30	11	35	23	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120