Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  80  of  120  ( 14389 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10318423--10318484
22
2.9
21
77
15
65
22
3
1
72
1.08
10318438--10318487
16
2.8
17
75
19
57
22
6
2
70
1.20
10318744--10318769
3
8.7
3
100
0
52
30
0
0
69
0.89
10319805--10319862
31
2.0
30
83
10
75
70
5
3
20
1.21
10321041--10321079
13
3.1
13
85
3
53
64
0
0
35
0.94
10321711--10321799
42
2.1
43
85
2
117
21
46
3
29
1.67
10323214--10323240
14
1.9
14
100
0
54
55
0
0
44
0.99
10323676--10323712
14
2.6
14
91
0
65
59
0
2
37
1.12
10323730--10323807
33
2.3
32
84
6
93
35
1
6
56
1.33
10323828--10323892
25
2.6
25
88
11
105
50
0
0
49
1.00
10323842--10323899
15
4.2
14
72
26
52
50
0
0
50
1.00
10323828--10323897
9
8.2
9
73
19
53
50
0
0
50
1.00
10323861--10323900
15
2.6
16
88
4
64
52
0
0
47
1.00
10323988--10324153
15
10.6
15
68
22
92
41
1
1
55
1.18
10323988--10324198
18
11.6
17
68
24
105
40
2
0
55
1.19
10323987--10324186
75
2.8
72
79
10
207
40
2
1
56
1.20
10324127--10324197
22
3.4
22
77
16
78
38
4
0
57
1.18
10325147--10325196
16
3.0
17
75
18
52
64
2
2
32
1.16
10325771--10325816
8
5.9
8
82
2
58
73
8
2
15
1.16
10325795--10325849
27
2.0
27
82
6
67
74
9
0
16
1.06
10325765--10325849
20
4.0
19
78
17
64
74
8
1
16
1.12
10333195--10333236
20
2.0
23
86
13
63
16
0
21
61
1.34
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10333451--10333496
16
3.1
16
74
25
55
15
0
13
71
1.14
10333438--10333496
29
2.0
29
90
3
91
16
0
13
69
1.19
10333502--10333540
20
2.0
20
85
10
53
17
0
10
71
1.12
10333533--10333565
17
2.0
17
88
5
50
15
0
12
72
1.12
10337834--10337864
13
2.3
14
94
5
55
77
3
0
19
0.90
10340988--10341131
55
2.5
55
80
6
128
55
18
4
21
1.61
10354370--10355272
341
2.7
339
83
4
1050
36
15
15
33
1.89
10355214--10355332
64
1.9
64
80
5
143
36
11
17
34
1.87
10355340--10355459
62
1.9
63
82
1
152
42
14
12
30
1.82
10360706--10360759
25
2.2
25
93
0
90
35
7
20
37
1.81
10362497--10362623
68
1.9
68
88
0
191
37
7
14
41
1.73
10363151--10363186
15
2.4
15
90
0
54
16
8
11
63
1.49
10363463--10363596
55
2.4
55
84
0
169
47
10
11
31
1.73
10363463--10363631
55
3.1
55
79
3
153
44
9
14
30
1.77
10363665--10363796
55
2.4
55
82
3
158
46
10
15
27
1.79
10367937--10368002
25
2.6
25
78
0
78
21
37
9
31
1.85
10367937--10368042
25
4.2
25
75
2
70
19
33
10
36
1.86
10371106--10371141
19
2.0
19
89
10
58
63
0
2
33
1.08
10371127--10371207
21
3.8
21
77
6
65
53
1
4
40
1.31
10371128--10371189
22
2.9
21
81
13
65
54
1
4
38
1.31
10371148--10371213
21
3.1
22
78
8
75
53
3
6
37
1.41
10371909--10371967
6
9.2
6
77
18
57
64
1
0
33
1.04
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10371896--10371967
35
2.1
34
87
7
101
61
1
0
37
1.05
10372127--10372176
20
2.5
19
81
12
55
66
2
0
32
1.03
10373651--10373706
21
2.7
20
78
13
60
51
0
1
46
1.11
10373844--10373893
22
2.2
24
79
17
61
54
2
4
40
1.31
10373852--10373894
22
1.9
23
86
13
63
51
2
2
44
1.27
10373868--10373910
17
2.7
16
89
10
70
51
0
2
46
1.13
10373846--10373930
38
2.2
40
79
10
95
50
3
2
43
1.32
10374019--10374056
18
2.1
19
90
5
60
47
0
0
52
1.00
10374544--10374590
23
2.0
23
91
0
76
55
0
36
8
1.31
10376368--10376405
20
1.9
20
94
0
67
47
10
5
36
1.61
10377009--10377048
18
2.2
18
86
0
53
42
2
12
42
1.56
10377114--10377220
34
3.2
33
81
7
108
35
8
14
42
1.75
10378667--10378717
25
2.0
25
92
0
84
23
21
17
37
1.94
10379506--10379548
16
2.5
16
85
11
50
27
4
6
60
1.43
10380406--10380445
21
1.9
21
90
10
64
10
0
7
82
0.84
10382258--10382304
18
2.5
19
86
10
62
80
4
6
8
1.00
10382258--10382304
19
2.6
18
86
3
58
80
4
6
8
1.00
10382297--10382350
3
18.0
3
100
0
108
66
0
0
33
0.92
10382594--10382732
53
2.7
52
77
11
151
39
15
9
35
1.79
10382569--10383356
50
16.3
50
68
18
244
39
15
11
33
1.83
10382795--10383024
101
2.3
99
82
7
250
41
13
11
33
1.80
10382938--10383106
89
1.9
89
86
2
241
40
14
12
33
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10383027--10383439
50
8.4
49
74
9
222
41
16
10
31
1.82
10383170--10383439
102
2.7
99
80
7
251
42
16
10
31
1.81
10383213--10383439
102
2.3
101
80
6
257
43
16
8
31
1.77
10384744--10385070
58
5.7
55
76
9
282
37
13
6
43
1.69
10384764--10384980
113
1.9
115
85
1
303
37
12
6
42
1.69
10384745--10385069
57
5.7
57
77
7
284
36
13
6
43
1.69
10391818--10392142
57
5.7
57
84
5
431
37
12
5
44
1.66
10392157--10392314
5
31.6
5
71
19
91
74
1
3
20
1.05
10392157--10392252
6
16.3
6
76
13
85
77
1
5
16
1.01
10392157--10392316
30
5.3
30
73
16
125
75
1
3
20
1.04
10392202--10392255
17
3.3
15
80
12
54
77
0
5
16
0.94
10392157--10392315
13
13.3
11
72
20
90
74
1
3
20
1.04
10392277--10392316
14
3.1
13
85
7
55
82
0
0
17
0.67
10392161--10392316
11
13.4
11
71
10
69
75
1
3
19
1.04
10393108--10393191
31
2.8
29
75
18
82
66
4
3
25
1.27
10393141--10393183
20
2.1
21
86
4
61
67
4
4
23
1.28
10393150--10393202
22
2.5
20
81
6
61
62
7
5
24
1.44
10393316--10393395
41
1.9
41
82
7
99
76
2
1
20
0.97
10393330--10393388
18
3.2
17
74
11
55
74
3
0
22
0.96
10393316--10393395
35
2.2
36
85
14
105
76
2
1
20
0.97
10393319--10393395
30
2.6
29
78
13
77
76
2
1
19
0.97
10393350--10393395
13
3.7
13
85
5
60
78
2
0
19
0.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10396912--10396967
23
2.4
22
82
14
60
69
1
12
16
1.27
10403674--10403707
17
1.9
18
88
5
52
11
5
8
73
1.24
10405011--10405047
11
3.5
11
85
7
58
59
5
0
35
1.20
10406544--10406584
2
20.5
2
94
0
73
48
0
2
48
1.14
10407155--10407184
14
2.1
14
93
0
51
43
3
0
53
1.17
10407117--10407366
127
2.0
128
88
6
373
49
2
4
43
1.37
10407380--10407411
15
2.1
15
94
0
55
46
3
0
50
1.17
10407697--10407983
142
2.0
141
90
2
452
42
7
2
47
1.46
10409411--10409468
17
3.4
17
73
0
53
25
8
3
62
1.40
10409548--10409589
16
2.5
16
84
7
57
16
2
4
76
1.07
10409561--10409630
20
3.7
20
73
17
60
15
5
11
67
1.40
10410767--10410810
7
6.1
7
80
15
54
68
4
0
27
1.09
10410766--10410809
21
2.0
21
91
8
70
70
4
0
25
1.06
10413234--10413278
21
2.2
20
84
4
54
28
0
8
62
1.25
10413229--10413361
24
5.8
24
70
23
90
31
1
8
58
1.37
10413228--10413343
47
2.5
44
80
13
121
31
1
8
58
1.38
10413369--10413420
20
2.4
22
75
9
54
32
3
9
53
1.51
10413416--10413461
23
2.0
23
87
4
67
26
4
8
60
1.44
10413444--10413501
30
2.0
29
83
10
73
32
8
10
48
1.68
10413585--10413623
19
2.1
19
90
0
60
30
5
10
53
1.56
10413598--10413653
24
2.3
23
88
8
85
32
5
8
53
1.55
10413778--10413851
36
2.1
36
87
5
105
35
2
10
51
1.51
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10413794--10413862
20
3.5
20
77
18
74
36
4
8
50
1.53
10417088--10417157
16
4.3
16
81
18
83
75
0
11
12
1.04
10417088--10417188
16
6.1
17
75
14
70
74
0
13
11
1.08
10417115--10417165
7
6.7
7
91
8
66
72
0
15
11
1.12
10417107--10417177
25
3.0
23
80
17
83
73
0
14
12
1.11
10417089--10417177
9
11.1
8
84
10
87
74
0
12
13
1.08
10418335--10418419
21
4.0
21
79
11
100
41
2
15
41
1.60
10418563--10418615
23
2.3
23
93
0
88
30
11
15
43
1.81
10418922--10418958
16
2.3
16
90
0
56
32
16
16
35
1.91
10419841--10420070
115
2.0
115
93
0
397
40
3
20
35
1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120