genome.fa.s146.2.7.7.80.10.50.1000.23.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  23  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2591078--2591245	89	1.9	88	80	3	194	20	33	30	15	1.94
2591063--2591314	134	1.9	135	80	4	294	21	30	31	17	1.96
2592222--2592274	26	2.0	26	96	0	97	30	28	16	24	1.97
2593113--2593319	90	2.3	90	76	1	209	22	27	31	18	1.97
2594573--2594625	26	2.0	26	88	0	79	28	26	18	26	1.98
2595064--2595181	45	2.6	45	82	2	139	18	30	31	19	1.96
2595067--2595224	45	3.5	44	77	1	136	18	27	32	21	1.97
2597017--2597169	45	3.4	45	80	0	162	22	28	32	17	1.96
2597010--2597182	90	1.9	90	80	2	204	23	28	30	17	1.97
2598270--2598321	26	2.0	26	88	0	77	26	23	17	32	1.96
2598427--2598482	26	2.2	26	90	0	85	28	23	19	28	1.98
2599965--2600017	26	2.0	26	92	0	88	28	28	18	24	1.98
2599810--2600188	196	1.9	196	80	3	440	21	27	29	21	1.99
2601894--2601946	26	2.0	26	85	7	72	28	24	18	28	1.98
2602585--2602754	45	3.8	45	77	3	144	18	29	32	19	1.96
2604028--2604079	26	2.0	26	89	10	81	30	25	17	26	1.97
2610472--2610703	45	5.2	45	71	7	141	19	28	31	20	1.97
2610469--2610663	90	2.2	90	80	7	218	18	29	32	18	1.96
2611786--2611838	26	2.0	26	96	0	97	28	22	18	30	1.98
2612299--2612449	45	3.4	44	77	1	140	22	28	29	19	1.98
2620967--2621021	26	2.1	26	93	0	92	29	25	18	27	1.98
2621285--2621396	45	2.5	45	80	0	125	16	31	32	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2622432--2622484	26	2.0	26	88	0	79	26	28	18	26	1.98
2623980--2624047	26	2.6	26	85	0	91	29	22	17	30	1.97
2623987--2624057	26	2.7	26	89	4	99	30	22	14	32	1.93
2624501--2624601	45	2.2	45	85	0	130	19	31	31	16	1.95
2624514--2624613	45	2.2	45	81	0	119	21	32	32	15	1.94
2625550--2625602	26	2.0	26	88	0	79	28	26	18	26	1.98
2627291--2627343	26	2.0	26	88	0	79	26	26	22	24	2.00
2627643--2627695	26	2.0	26	96	0	97	26	24	20	28	1.99
2628133--2628185	26	2.0	26	96	0	97	26	24	20	28	1.99
2628638--2628836	90	2.2	90	81	3	231	21	29	31	18	1.96
2628639--2628836	45	4.4	45	74	5	184	21	29	31	17	1.96
2628675--2628862	90	2.1	90	80	5	202	21	28	31	19	1.97
2629502--2629947	169	2.6	169	80	2	464	19	28	28	23	1.99
2629678--2629988	170	1.8	170	81	2	383	19	28	28	23	1.98
2630080--2630132	26	2.0	26	92	7	90	30	26	16	26	1.97
2630244--2630294	26	2.0	26	88	7	77	27	25	19	27	1.99
2631257--2631543	45	6.4	45	73	1	200	20	30	30	18	1.96
2631257--2631489	90	2.6	89	82	3	288	20	32	29	18	1.96
2631920--2631972	26	2.0	26	89	7	81	28	24	18	28	1.98
2632476--2632586	45	2.5	44	81	8	136	19	27	32	20	1.97
2634383--2634718	185	1.8	186	87	1	505	20	25	27	26	1.99
2635001--2635053	26	2.0	26	92	0	88	26	22	20	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2635035--2635325	136	2.1	136	84	1	368	20	26	26	26	1.99
2635629--2635811	45	4.1	44	80	2	168	19	31	30	18	1.96
2635742--2635833	45	2.0	45	81	4	105	27	30	29	13	1.94
2635876--2635900	13	1.9	13	100	0	50	24	36	16	24	1.94
2636943--2637259	136	2.4	134	78	6	311	19	26	27	26	1.99
2637414--2637543	44	2.9	45	78	6	147	19	30	32	18	1.96
2637417--2637599	89	2.0	90	80	5	201	19	28	32	20	1.97
2639122--2639232	45	2.5	44	79	2	105	18	32	31	17	1.94
2639263--2639287	13	1.9	13	100	0	50	24	36	16	24	1.94
2640032--2640084	26	2.0	26	96	0	97	28	26	18	26	1.98
2639801--2640629	333	2.5	333	82	3	936	20	27	28	23	1.99
2642350--2642507	45	3.5	45	84	0	208	17	31	34	17	1.93
2642350--2642547	90	2.2	90	81	1	227	18	30	33	17	1.94
2642352--2642547	45	4.4	44	80	3	142	18	30	33	17	1.94
2643428--2643480	26	2.0	26	85	0	70	30	30	16	22	1.96
2644246--2644397	45	3.4	44	79	1	151	16	30	34	19	1.94
2644446--2644470	13	1.9	13	100	0	50	24	36	16	24	1.94
2645190--2645601	197	2.1	196	83	3	497	23	28	27	20	1.99
2645542--2645594	26	2.0	26	96	0	97	26	24	20	28	1.99
2645457--2646067	174	3.6	172	74	10	547	19	26	28	25	1.99
2645870--2645927	26	2.2	27	90	6	100	29	20	20	29	1.98
2647071--2647123	26	2.0	26	89	7	81	30	28	16	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2648768--2648819	26	2.0	26	96	0	95	26	28	19	25	1.98
2649871--2649923	26	2.0	26	88	0	79	28	26	20	24	1.99
2650604--2650656	26	2.0	26	89	7	81	28	26	18	26	1.98
2650692--2651131	159	2.8	160	83	1	510	18	26	31	23	1.97
2651120--2651170	26	2.0	26	92	7	86	27	25	17	29	1.98
2654886--2655122	45	5.3	45	72	9	180	20	27	32	18	1.96
2654887--2655124	90	2.6	90	78	7	234	20	27	32	19	1.96
2656380--2656433	27	2.0	26	89	3	81	27	25	18	27	1.98
2656878--2657083	90	2.3	90	79	1	216	18	29	33	19	1.96
2656927--2657121	90	2.2	90	83	2	241	18	29	33	18	1.95
2656878--2657129	45	5.6	44	76	5	193	19	28	34	18	1.95
2658191--2658246	26	2.2	26	90	0	85	33	25	14	26	1.94
2658717--2658859	45	3.2	45	79	7	164	20	33	30	15	1.94
2659800--2659852	26	2.0	26	85	0	70	30	26	16	26	1.97
2660059--2660308	136	1.8	136	85	3	351	19	26	28	24	1.99
2660622--2660726	45	2.4	44	81	1	120	18	31	33	17	1.94
2660705--2660746	20	2.1	20	91	8	68	9	19	40	30	1.83
2666092--2666144	26	2.0	26	96	0	97	26	28	20	24	1.99
2666447--2666499	26	2.0	26	96	0	97	26	24	20	28	1.99
2667108--2667160	26	2.0	26	92	0	88	26	28	18	26	1.98
2667954--2668151	45	4.4	45	77	1	173	19	29	32	18	1.95
2669052--2669101	25	2.0	26	88	4	75	28	30	16	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2669903--2670070	45	3.7	45	83	0	192	19	31	32	17	1.94
2671169--2671213	20	2.3	20	92	3	74	26	35	26	11	1.90
2671436--2671488	26	2.0	26	92	0	88	30	22	16	30	1.96
2671931--2672088	45	3.5	45	83	0	199	18	29	32	18	1.95
2671931--2672125	90	2.2	90	81	1	212	18	28	32	19	1.96
2679543--2679700	45	3.5	45	74	3	156	17	31	34	17	1.93
2685150--2685202	26	2.0	26	89	7	81	26	20	22	30	1.98
2685314--2685364	26	2.0	26	92	0	84	25	23	21	29	1.99
2685627--2685679	26	2.0	26	96	0	97	30	24	16	28	1.97
2685583--2686001	173	2.4	173	82	2	482	21	26	27	24	1.99
2688068--2688221	45	3.5	43	81	3	173	18	29	31	20	1.96
2688108--2688255	45	3.3	44	80	7	149	18	28	31	20	1.97
2689494--2689545	26	2.0	26	96	0	95	26	25	19	28	1.98
2689883--2689988	45	2.4	45	79	6	115	20	29	33	16	1.95
2690709--2691115	170	2.4	170	84	3	500	20	27	28	23	1.99
2691751--2691967	45	4.8	45	77	3	204	19	29	32	17	1.95
2691752--2691975	90	2.5	89	82	7	272	19	29	33	17	1.95
2692892--2692944	26	2.0	26	96	0	97	26	28	20	24	1.99
2696249--2696299	26	2.0	26	88	0	75	31	25	15	27	1.96
2696601--2696653	26	2.0	26	92	0	88	28	24	18	28	1.98
2698194--2698246	26	2.0	26	85	7	72	30	24	18	26	1.98
2698549--2698601	26	2.0	26	100	0	106	30	26	16	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2698710--2698762	26	2.0	26	96	0	97	28	26	18	26	1.98
2698519--2698870	161	2.2	162	83	5	437	23	28	23	25	1.99
2700388--2700548	45	3.6	45	80	0	178	18	29	33	18	1.95
2700787--2702001	628	1.9	625	87	2	1785	30	22	20	26	1.98
2701963--2702327	195	1.9	196	81	5	452	21	26	27	24	1.99
2702472--2702524	26	2.0	26	92	0	88	28	24	18	28	1.98
2702967--2703137	45	3.8	45	83	1	191	17	29	32	20	1.96
2702967--2703136	90	1.9	90	83	2	225	17	29	32	20	1.95
2702972--2703174	45	4.5	45	80	3	144	18	29	32	19	1.96
2702972--2703164	90	2.1	90	80	3	210	19	29	32	19	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120