genome.fa.s146.2.7.7.80.10.50.1000.43.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  43  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4866906--4866947	7	6.3	7	94	5	70	90	9	0	0	0.45
4867167--4867306	18	7.5	19	67	22	66	27	2	2	67	1.16
4867169--4867305	21	6.7	20	68	22	54	28	2	2	66	1.18
4867238--4867293	17	3.1	18	80	17	55	32	1	1	64	1.14
4867279--4867308	9	3.3	9	90	0	51	23	0	0	76	0.78
4867878--4867918	11	3.7	11	90	0	64	17	31	29	21	1.96
4868285--4868343	16	3.8	16	75	16	52	13	1	3	81	0.90
4868404--4868443	14	2.5	17	73	23	50	15	10	0	75	1.05
4868409--4868438	14	2.1	14	93	0	51	16	6	0	76	0.99
4868446--4868621	58	2.9	59	83	9	241	45	6	13	34	1.69
4869215--4869267	26	2.0	26	96	0	97	26	20	24	28	1.99
4872756--4872807	26	2.0	26	92	0	86	30	19	21	28	1.97
4873757--4873788	14	2.1	16	88	11	50	15	34	18	31	1.93
4874509--4874561	26	2.0	26	96	0	97	28	20	24	26	1.99
4869135--4877569	888	9.5	884	85	5	10550	25	24	25	25	2.00
4875407--4875459	26	2.0	26	92	0	88	26	18	24	30	1.98
4879717--4879769	26	2.0	26	92	0	88	28	18	24	28	1.98
4880868--4880919	26	2.0	26	100	0	104	26	19	26	26	1.99
4881734--4881786	26	2.0	26	96	0	97	28	20	24	26	1.99
4881051--4882333	711	1.8	710	92	1	2189	26	22	23	27	1.99
4882478--4882530	26	2.0	26	96	0	97	24	20	28	26	1.99
4883372--4883424	26	2.0	26	96	0	97	28	20	24	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4884277--4884327	26	2.0	25	88	3	75	29	17	23	29	1.97
4881760--4885189	903	3.8	900	87	2	4812	25	23	25	26	2.00
4884712--4884770	26	2.3	25	80	8	66	20	10	20	49	1.77
4885851--4885903	26	2.0	26	96	0	97	26	18	26	28	1.98
4886758--4886810	26	2.0	26	92	0	88	28	16	26	28	1.97
4887639--4887691	26	2.0	26	92	0	88	26	20	24	28	1.99
4885156--4889883	877	5.3	883	84	6	5732	25	23	25	25	2.00
4889420--4889498	26	3.0	26	90	0	131	29	18	24	27	1.98
4891223--4891275	26	2.0	26	92	0	88	30	18	24	26	1.98
4891030--4891433	185	2.2	185	87	0	558	23	26	28	21	1.99
4892117--4892169	26	2.0	26	100	0	106	26	20	26	26	1.99
4893004--4893064	26	2.4	26	83	5	90	29	18	24	27	1.98
4893441--4893497	26	2.2	26	83	0	69	21	8	10	59	1.57
4891217--4893640	903	2.7	888	86	4	3358	25	23	24	26	2.00
4898008--4898056	25	2.0	24	96	4	89	28	18	28	24	1.98
4898881--4898930	25	2.0	26	88	4	75	32	18	24	26	1.97
4899781--4899831	26	2.0	26	88	0	75	31	17	19	31	1.95
4896222--4907159	902	12.2	901	83	6	12615	25	23	25	25	2.00
4901548--4901600	26	2.0	26	100	0	106	26	20	26	26	1.99
4903316--4903368	26	2.0	26	100	0	106	26	20	26	26	1.99
4906018--4906070	26	2.0	26	96	0	97	30	18	22	28	1.98
4896222--4907174	903	12.2	903	83	6	12664	25	23	25	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4906922--4906976	26	2.1	26	93	0	92	27	18	27	27	1.98
4907626--4910186	898	2.8	900	85	4	3290	25	23	24	25	2.00
4911195--4911247	26	2.0	26	92	0	88	28	18	22	30	1.98
4912672--4912724	26	2.0	26	100	0	106	26	20	26	26	1.99
4913462--4913494	11	3.0	11	100	0	66	18	36	27	18	1.94
4913575--4913627	26	2.0	26	92	0	88	30	18	26	24	1.98
4912008--4914099	891	2.3	892	87	4	2946	24	23	25	26	2.00
4914382--4914434	26	2.0	26	96	0	97	28	20	24	26	1.99
4914920--4914972	26	2.0	26	92	0	88	30	18	26	24	1.98
4916700--4916755	26	2.2	26	96	0	103	26	17	25	30	1.97
4914581--4917425	883	3.2	890	87	3	4020	25	23	24	26	2.00
4917553--4917605	26	2.0	26	100	0	106	26	20	26	26	1.99
4917697--4926019	870	9.4	871	83	6	9284	25	23	24	25	2.00
4922386--4922438	26	2.0	26	96	0	97	26	18	26	28	1.98
4923275--4923324	26	1.9	26	95	0	91	28	18	28	26	1.98
4924170--4924247	26	3.0	26	81	10	115	29	17	25	26	1.98
4925993--4926045	26	2.0	26	92	0	88	28	20	22	28	1.99
4918019--4926204	891	9.2	891	84	5	9326	25	23	24	25	2.00
4926180--4926230	26	2.0	26	88	0	75	31	15	25	27	1.96
4925970--4926390	186	2.3	184	84	2	540	23	27	28	21	1.99
4926782--4936081	865	10.7	864	83	7	10554	25	23	24	26	2.00
4931791--4931843	26	2.0	26	85	0	70	28	15	26	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4934398--4934450	26	2.0	26	100	0	106	26	20	26	26	1.99
4935296--4935348	26	2.0	26	96	0	97	26	18	26	28	1.98
4936215--4936354	10	13.9	10	67	24	64	28	2	2	66	1.17
4936202--4936253	27	1.9	27	84	7	70	26	1	3	67	1.18
4936219--4936346	21	6.1	20	68	27	61	28	2	3	65	1.20
4936928--4936966	11	3.5	11	82	0	51	17	25	30	25	1.97
4937450--4937489	14	2.5	17	73	23	50	15	10	0	75	1.05
4937455--4937484	14	2.1	14	93	0	51	16	6	0	76	0.99
4937492--4937641	58	2.5	59	82	9	198	47	6	12	34	1.65
4938218--4938270	26	2.0	26	96	0	97	26	20	24	28	1.99
4939987--4940039	26	2.0	26	96	0	97	28	20	24	26	1.99
4940881--4940933	26	2.0	26	96	0	97	26	18	28	26	1.98
4938105--4949643	894	13.0	891	84	5	13509	25	24	24	25	2.00
4941777--4941854	26	3.0	26	96	0	138	30	19	20	29	1.97
4942706--4942761	26	2.2	26	93	0	94	26	19	23	30	1.98
4944494--4944546	26	2.0	26	92	0	88	26	18	24	30	1.98
4947162--4947214	26	2.0	26	92	0	88	28	18	26	26	1.98
4941806--4949643	911	8.9	847	82	9	6962	25	24	25	25	2.00
4948873--4948927	26	2.2	25	93	3	92	27	16	25	30	1.96
4951957--4952011	26	2.1	27	93	3	94	29	20	23	27	1.99
4952702--4952754	26	2.0	26	96	0	97	24	20	28	26	1.99
4953578--4953630	26	2.0	26	96	0	97	28	20	24	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4955389--4955441	26	2.0	26	85	0	70	33	18	20	26	1.96
4951983--4956170	904	4.7	903	83	5	5264	25	23	24	26	2.00
4956186--4956238	26	2.0	26	88	0	79	22	18	26	32	1.97
4956970--4957022	26	2.0	26	88	0	79	22	18	28	30	1.98
4957869--4957924	26	2.2	26	90	0	85	28	17	25	28	1.98
4959506--4959561	26	2.2	26	90	0	85	28	17	25	28	1.98
4960267--4960320	26	2.1	26	89	0	81	27	18	25	27	1.98
4958926--4960413	760	2.0	762	87	2	2184	25	23	22	28	1.99
4962045--4962097	26	2.0	26	92	0	88	30	18	24	26	1.98
4962943--4962995	26	2.0	26	88	0	79	30	20	26	22	1.98
4959689--4964744	898	5.7	896	87	3	6887	25	23	24	26	2.00
4964752--4972598	904	8.9	899	86	4	9772	25	24	25	25	2.00
4971741--4971792	25	2.0	26	88	3	79	30	17	23	28	1.97
4973205--4973254	26	1.9	26	91	0	82	30	18	28	24	1.97
4974102--4974154	26	2.0	26	96	0	97	28	18	26	26	1.98
4972617--4978212	900	6.3	898	85	4	7135	25	23	24	26	2.00
4975004--4975056	26	2.0	26	96	0	97	26	18	26	28	1.98
4976803--4976855	26	2.0	26	92	0	88	24	22	26	26	2.00
4977222--4977278	26	2.2	26	83	0	69	24	8	8	57	1.57
4981106--4981491	158	2.4	158	85	2	497	24	29	25	20	1.99
4984632--4984684	26	2.0	26	96	0	97	26	20	24	28	1.99
4986412--4986464	26	2.0	26	96	0	97	26	18	26	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4987337--4987700	159	2.3	159	81	4	439	22	28	28	20	1.99
4989263--4989315	26	2.0	26	92	0	88	24	18	28	28	1.98
4990169--4990221	26	2.0	26	92	0	88	28	18	24	28	1.98
4987503--4991100	906	4.0	903	87	2	4937	24	23	25	26	2.00
4990335--4996432	900	6.9	839	76	11	2779	25	24	24	25	2.00
4991910--4991962	26	2.0	26	100	0	106	26	20	26	26	1.99
4992814--4992863	26	1.9	26	91	0	82	28	20	26	26	1.99
4993711--4993763	26	2.0	26	92	0	88	26	20	24	28	1.99
4994606--4994657	26	2.0	26	96	0	95	28	19	25	26	1.98
4991103--4997565	900	7.2	901	87	2	8705	24	25	25	24	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120