genome.fa.s146.2.7.7.80.10.50.1000.39.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  39  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4309122--4318114	882	10.0	891	77	10	7588	25	24	24	26	2.00
4309122--4338970	868	33.1	903	73	12	17405	25	24	24	25	2.00
4315440--4315492	26	2.0	26	100	0	106	26	20	26	26	1.99
4316307--4316359	26	2.0	26	85	7	72	28	16	22	32	1.96
4313906--4318114	900	4.8	865	81	9	4354	25	24	24	26	2.00
4318067--4318443	158	2.4	160	80	4	413	22	31	26	20	1.98
4319115--4319167	26	2.0	26	92	0	88	28	18	24	28	1.98
4320016--4320066	26	2.0	26	92	0	84	27	15	27	29	1.96
4318249--4321206	900	3.3	894	87	3	4043	24	24	25	24	2.00
4321723--4321775	26	2.0	26	88	0	79	24	16	28	30	1.97
4322628--4322703	26	2.9	26	88	0	116	30	15	25	28	1.96
4321723--4323434	920	1.9	923	89	2	2708	25	23	24	26	2.00
4323487--4323562	26	2.9	26	92	2	116	30	17	23	28	1.97
4326409--4326459	26	2.0	26	100	0	102	27	19	27	25	1.99
4327314--4327369	26	2.2	26	96	0	103	26	17	26	28	1.98
4324079--4338881	907	16.7	866	83	7	16065	25	24	24	25	2.00
4329937--4329989	26	2.0	26	88	0	79	28	16	24	30	1.97
4331717--4331769	26	2.0	26	92	0	88	24	20	26	28	1.99
4334414--4334466	26	2.0	26	88	0	79	30	22	20	26	1.98
4337967--4338018	25	2.0	26	92	3	88	26	23	23	26	2.00
4329072--4338970	894	11.1	895	85	4	12660	25	24	25	25	2.00
4338536--4339394	424	2.0	427	89	4	1309	25	27	26	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4340179--4340231	26	2.0	26	92	0	88	28	18	24	28	1.98
4341071--4341123	26	2.0	26	96	0	97	24	20	28	26	1.99
4338970--4343562	891	5.2	882	86	3	6148	25	23	24	25	2.00
4343615--4343667	26	2.0	26	88	0	79	28	16	24	30	1.97
4344520--4344572	26	2.0	26	100	0	106	26	20	26	26	1.99
4345424--4345476	26	2.0	26	96	0	97	26	22	24	26	2.00
4348123--4348175	26	2.0	26	96	0	97	26	18	26	28	1.98
4349028--4349080	26	2.0	26	100	0	106	26	16	26	30	1.97
4343573--4350888	902	8.2	899	85	5	8962	24	24	25	25	2.00
4350730--4350782	26	2.0	26	88	0	79	26	18	26	28	1.98
4350888--4351965	561	1.9	561	90	0	1719	27	20	22	29	1.98
4352959--4353011	26	2.0	26	96	0	97	28	20	24	26	1.99
4352106--4356784	897	5.2	872	82	7	5018	25	24	24	25	2.00
4353848--4353900	26	2.0	26	92	0	88	28	18	24	28	1.98
4354765--4354831	26	2.6	26	95	0	116	26	20	25	26	1.99
4363047--4363099	26	2.0	26	100	0	106	26	16	26	30	1.97
4363935--4363987	26	2.0	26	92	0	88	26	15	24	33	1.95
4367290--4367341	26	2.0	26	96	0	95	26	17	23	32	1.96
4364851--4370851	870	6.8	869	85	5	7669	25	24	25	25	2.00
4369032--4369084	26	2.0	26	100	0	106	26	20	26	26	1.99
4367346--4370950	892	4.1	902	86	4	4805	25	23	25	25	2.00
4370825--4370877	26	2.0	26	100	0	106	26	20	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4370796--4371228	170	2.5	170	89	0	652	24	27	27	20	1.99
4371165--4371217	26	2.0	26	96	0	97	26	20	24	28	1.99
4372625--4372677	26	2.0	26	100	0	106	26	20	26	26	1.99
4372795--4372847	26	2.0	26	92	0	88	30	20	22	26	1.98
4372622--4373041	170	2.5	170	89	0	626	25	26	27	20	1.99
4372965--4373017	26	2.0	26	92	0	88	26	18	24	30	1.98
4374709--4375190	251	1.9	251	90	1	779	24	16	18	40	1.91
4375988--4376040	26	2.0	26	96	0	97	28	20	24	26	1.99
4376885--4376936	25	2.0	26	96	3	97	25	21	26	26	1.99
4375571--4377996	895	2.7	887	82	10	2798	25	25	24	24	2.00
4377750--4378133	159	2.4	159	82	6	440	22	30	27	19	1.98
4378810--4378861	25	2.0	26	92	3	88	28	19	25	26	1.98
4377938--4379780	904	2.0	896	88	3	2740	26	24	24	25	2.00
4379714--4379766	26	2.0	26	96	0	97	30	18	22	28	1.98
4380456--4380508	26	2.0	26	88	0	79	28	16	26	28	1.97
4381359--4381411	26	2.0	26	92	0	88	28	22	22	26	1.99
4379740--4382492	899	3.1	896	88	2	3991	25	24	24	25	2.00
4382259--4382311	26	2.0	26	96	0	97	26	18	26	28	1.98
4389268--4389319	26	2.0	25	96	3	95	26	17	26	28	1.97
4390172--4390220	26	1.9	26	87	4	73	32	20	26	20	1.97
4391072--4391120	26	1.9	26	87	4	73	32	20	26	20	1.97
4392858--4392910	26	2.0	26	88	0	79	32	20	20	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4387363--4402766	902	17.2	900	87	2	20612	25	24	24	25	2.00
4394665--4394717	26	2.0	26	96	0	97	28	20	24	26	1.99
4395567--4395619	26	2.0	26	85	0	70	32	20	22	24	1.98
4396466--4396518	26	2.0	26	100	0	106	26	16	26	30	1.97
4397357--4397409	26	2.0	26	88	0	79	24	20	24	30	1.99
4399136--4399187	26	2.0	26	96	0	95	28	19	25	26	1.98
4400038--4400090	26	2.0	26	96	0	97	28	20	22	28	1.99
4400939--4400991	26	2.0	26	96	0	97	26	20	28	24	1.99
4401843--4401893	26	2.0	25	96	3	93	27	23	25	23	2.00
4403457--4403509	26	2.0	26	96	0	97	26	22	24	26	2.00
4404358--4404410	26	2.0	26	96	0	97	26	15	26	32	1.95
4405194--4405246	26	2.0	26	100	0	106	26	20	26	26	1.99
4406098--4406149	26	2.0	26	88	0	77	28	17	23	30	1.97
4404870--4431249	904	29.3	899	75	10	15620	25	24	24	25	2.00
4408803--4408858	26	2.2	26	93	0	94	26	19	25	28	1.99
4410565--4410614	26	1.9	26	95	0	91	28	24	24	24	2.00
4411475--4411527	26	2.0	26	88	0	79	26	18	26	28	1.98
4404870--4416184	873	12.7	871	85	5	13286	25	24	25	25	2.00
4415856--4415908	26	2.0	26	96	0	97	28	18	26	26	1.98
4416203--4416282	42	1.9	42	94	0	142	25	25	32	17	1.97
4417203--4417255	26	2.0	26	96	0	97	28	20	24	26	1.99
4418106--4418158	26	2.0	26	96	0	97	26	18	26	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4419849--4419901	26	2.0	26	96	0	97	26	18	26	28	1.98
4420744--4420799	26	2.2	26	96	0	103	28	16	23	32	1.96
4416255--4431249	879	17.0	872	83	5	16853	25	23	24	26	2.00
4426881--4426932	25	2.0	26	88	3	79	26	19	25	28	1.98
4428689--4428741	26	2.0	26	88	0	79	28	16	26	28	1.97
4430447--4430499	26	2.0	26	92	0	88	24	20	26	28	1.99
4431654--4431706	26	2.0	26	88	0	79	26	18	26	28	1.98
4433447--4433499	26	2.0	26	88	0	79	24	16	26	32	1.97
4431257--4436438	877	5.9	895	84	5	6306	25	24	25	25	2.00
4435215--4435264	26	1.9	26	91	0	82	28	20	28	24	1.99
4436862--4438393	844	1.8	824	85	3	1955	26	22	24	26	2.00
4437877--4439196	719	1.8	714	88	2	2036	26	22	23	27	1.99
4437769--4439253	719	2.1	715	85	2	2032	26	23	23	27	2.00
4440996--4441047	26	2.0	26	88	0	77	28	19	26	25	1.98
4441701--4441753	26	2.0	26	92	0	88	28	18	24	28	1.98
4445159--4445211	26	2.0	26	92	0	88	26	20	24	28	1.99
4446272--4446305	16	2.1	16	88	0	50	14	23	58	2	1.50
4442793--4452778	887	11.2	887	83	5	11136	25	23	24	26	2.00
4447830--4447882	26	2.0	26	100	0	106	26	20	26	26	1.99
4448735--4448784	26	1.9	26	100	0	100	30	20	26	24	1.98
4451400--4451453	27	2.0	26	89	3	81	27	18	25	27	1.98
4452304--4452356	26	2.0	26	85	7	72	32	22	20	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4453101--4453153	26	2.0	26	96	0	97	30	18	22	28	1.98
4451973--4453575	797	2.0	798	86	2	2207	25	23	24	25	2.00
4454002--4454054	26	2.0	26	89	7	81	28	20	22	28	1.99
4454862--4454911	26	1.9	26	100	0	100	30	20	26	24	1.98
4455662--4455694	11	3.0	11	100	0	66	18	36	27	18	1.94
4452771--4458282	913	6.2	888	81	7	5940	25	24	24	25	2.00
4457944--4458650	368	1.9	369	89	3	1102	29	19	18	32	1.96
4458810--4458860	26	2.0	26	92	0	84	29	17	27	25	1.98
4460611--4461407	399	2.0	399	89	1	1213	26	26	23	23	2.00
4461337--4461389	26	2.0	26	92	0	88	28	20	20	30	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120