genome.fa.s146.2.7.7.80.10.50.1000.52.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  52  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5952830--5976782	891	26.5	898	74	11	14753	25	24	24	25	2.00
5954782--5954832	26	2.0	26	84	0	66	25	21	17	35	1.95
5955634--5955686	26	2.0	26	96	0	97	26	24	20	28	1.99
5956537--5956589	26	2.0	26	85	0	70	28	24	16	30	1.97
5958318--5958368	26	2.0	26	92	0	84	27	29	13	29	1.94
5962478--5962530	26	2.0	26	96	0	97	28	26	18	26	1.98
5964008--5964060	26	2.0	26	96	0	97	28	26	20	24	1.99
5965765--5965815	25	2.0	26	88	3	77	29	25	15	29	1.96
5963199--5976782	897	15.3	879	80	9	12474	25	25	24	24	2.00
5967629--5967678	26	1.9	26	100	0	100	26	26	20	28	1.99
5968507--5968559	26	2.0	26	92	7	90	30	26	16	26	1.97
5969406--5969456	26	2.0	26	92	0	84	23	25	19	31	1.98
5970298--5970348	26	2.0	26	92	0	84	23	25	19	31	1.98
5971196--5971247	26	2.0	26	92	0	86	28	26	19	25	1.98
5972922--5972974	26	2.0	26	88	0	79	28	24	18	28	1.98
5973800--5973852	26	2.0	26	96	0	97	28	26	18	26	1.98
5974687--5974742	26	2.2	26	100	0	112	32	25	16	26	1.96
5971573--5976782	920	5.9	892	84	5	6212	25	25	24	24	2.00
5975578--5975630	26	2.0	26	92	7	90	30	26	16	26	1.97
5977109--5977161	26	2.0	26	88	0	79	30	22	18	28	1.98
5978910--5978962	26	2.0	26	92	0	88	26	22	22	28	1.99
5980708--5980757	26	1.9	26	100	0	100	24	26	22	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5976780--5985038	898	9.2	897	86	3	10861	25	24	24	25	2.00
5982071--5982121	26	1.9	26	84	4	66	56	9	7	25	1.58
5983397--5983448	26	2.0	26	88	7	79	26	25	21	26	1.99
5985012--5985064	26	2.0	26	92	7	90	30	26	16	26	1.97
5984304--5985781	739	2.0	742	90	2	2324	27	23	22	25	2.00
5984994--5989275	901	4.7	901	86	1	5733	26	24	23	25	2.00
5989396--5989447	26	2.0	25	92	3	86	26	28	17	26	1.97
5988538--5990051	776	2.0	776	89	1	2322	27	24	23	25	2.00
5990298--5990350	26	2.0	26	92	0	88	30	26	16	26	1.97
5991999--5992051	26	2.0	26	92	0	88	28	24	18	28	1.98
5993245--5993623	159	2.4	159	80	0	461	20	27	30	21	1.98
5994431--5994509	26	3.0	26	88	0	113	30	22	17	29	1.97
5994480--5997295	875	3.2	870	82	8	3404	25	24	25	25	2.00
5998708--5998760	26	2.0	26	89	7	81	30	15	22	32	1.94
5999869--5999927	26	2.3	26	83	11	70	30	23	16	28	1.97
6001605--6001660	26	2.2	26	90	0	85	26	21	23	28	1.99
6001686--6001942	136	1.9	136	90	3	410	17	25	34	22	1.96
6003511--6003563	26	2.0	26	88	0	79	28	22	18	30	1.98
6004409--6004461	26	2.0	26	88	0	79	28	22	18	30	1.98
6002638--6006090	898	3.8	898	90	2	5024	25	24	24	24	2.00
6005300--6005352	26	2.0	26	100	0	106	26	26	20	26	1.99
6006708--6006732	4	6.2	4	100	0	50	0	72	28	0	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6006019--6011486	872	6.2	874	84	4	6851	25	25	24	25	2.00
6009536--6009588	26	2.0	26	100	0	106	26	26	20	26	1.99
6010427--6010479	26	2.0	26	85	7	72	30	22	16	30	1.96
6012950--6013002	26	2.0	26	96	0	97	24	26	20	28	1.99
6011491--6019809	891	9.4	890	84	6	9794	26	24	23	25	2.00
6015547--6015599	26	2.0	26	96	0	97	26	24	20	28	1.99
6016439--6016489	26	2.0	26	96	0	93	29	23	19	27	1.98
6019117--6019169	26	2.0	26	92	0	88	28	24	18	28	1.98
6020649--6020701	26	2.0	26	92	0	88	28	24	18	28	1.98
6019846--6024922	901	5.7	894	84	5	6080	26	24	23	25	2.00
6022445--6022497	26	2.0	26	96	0	97	28	26	18	26	1.98
6024213--6024265	26	2.0	26	100	0	106	26	26	20	26	1.99
6025777--6025830	26	2.1	26	85	0	72	33	24	14	27	1.94
6026676--6026728	26	2.0	26	92	0	88	22	26	22	28	1.99
6027573--6027625	26	2.0	26	92	0	88	26	26	20	26	1.99
6029348--6029398	26	2.0	26	92	0	84	29	27	15	27	1.96
6032021--6032076	26	2.2	26	100	0	112	32	28	12	26	1.93
6025125--6036480	892	12.6	871	76	10	8357	25	24	24	25	2.00
6032656--6033020	167	2.2	167	84	2	462	17	31	28	22	1.97
6032696--6033116	167	2.6	162	76	7	415	18	30	28	22	1.97
6032847--6036480	868	4.2	867	88	3	4854	25	25	24	24	2.00
6035659--6035709	26	2.0	26	84	7	68	31	21	15	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6035805--6037159	680	2.0	677	88	2	2006	27	23	23	25	2.00
6038973--6039025	26	2.0	26	92	7	90	24	24	24	26	2.00
6039874--6039926	26	2.0	26	88	0	79	22	24	24	28	2.00
6036485--6067893	901	34.7	900	76	9	25384	25	24	24	25	2.00
6040772--6040825	25	2.1	26	90	10	85	24	27	20	27	1.99
6043387--6043439	26	2.0	26	88	0	79	28	26	18	26	1.98
6042364--6085974	896	47.6	892	70	13	16833	25	24	24	25	2.00
6045178--6045230	26	2.0	26	88	0	79	28	22	18	30	1.98
6046228--6046280	26	2.0	26	96	0	97	28	24	20	26	1.99
6047131--6047190	26	2.4	26	86	5	88	25	28	21	25	1.99
6046037--6067893	902	24.1	901	78	8	19530	25	24	24	25	2.00
6048184--6048232	25	1.9	26	91	4	82	22	32	18	26	1.97
6049082--6049134	26	2.0	26	96	0	97	26	24	20	28	1.99
6049973--6050025	26	2.0	26	96	0	97	28	26	20	24	1.99
6053713--6053765	26	2.0	26	96	0	97	26	24	20	28	1.99
6054621--6054673	26	2.0	26	88	0	79	32	26	16	24	1.97
6055523--6055575	26	2.0	26	92	0	88	24	28	22	24	2.00
6057268--6057320	26	2.0	26	92	0	88	28	24	18	28	1.98
6058169--6058221	26	2.0	26	92	0	88	28	28	18	24	1.98
6059068--6059117	26	2.0	26	88	4	75	28	22	18	32	1.97
6063542--6063594	26	2.0	26	96	0	97	26	26	18	28	1.98
6064428--6064480	26	2.0	26	100	0	106	26	26	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6062673--6067893	900	5.8	900	83	6	6269	26	24	23	25	2.00
6065328--6065402	26	2.9	26	89	0	123	26	24	20	29	1.99
6064428--6067893	899	3.8	914	82	7	4084	26	24	23	25	2.00
6066248--6066298	26	2.0	26	92	0	84	23	29	17	29	1.97
6067151--6067202	26	2.0	26	96	0	95	28	26	17	26	1.97
6068619--6068671	26	2.0	26	92	0	88	30	26	16	26	1.97
6067893--6085974	899	20.3	897	85	4	22064	25	25	23	25	2.00
6071314--6071363	26	1.9	26	87	0	73	28	30	18	24	1.97
6072214--6072265	26	2.0	25	88	3	77	26	25	21	26	1.99
6073997--6074048	26	2.0	26	92	0	86	32	21	17	28	1.96
6074889--6074941	26	2.0	26	100	0	106	30	26	16	26	1.97
6076647--6076699	26	2.0	26	100	0	106	30	26	16	26	1.97
6077522--6077594	26	2.8	26	93	0	128	28	27	16	27	1.97
6078429--6078481	26	2.0	26	96	0	97	28	26	18	26	1.98
6079313--6079365	26	2.0	26	92	0	88	26	22	20	30	1.98
6081985--6082037	26	2.0	26	100	0	106	26	26	20	26	1.99
6083786--6083838	26	2.0	26	88	0	79	28	26	18	26	1.98
6085513--6085568	26	2.2	26	90	0	85	32	23	16	28	1.96
6086153--6086205	26	2.0	26	88	0	79	28	24	20	26	1.99
6087055--6087107	26	2.0	26	96	0	97	26	26	18	28	1.98
6087953--6088005	26	2.0	26	96	0	97	28	24	20	26	1.99
6088836--6088891	26	2.2	26	90	0	85	28	23	19	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6089742--6089794	26	2.0	26	88	0	79	26	26	18	28	1.98
6086030--6093261	903	8.0	900	83	5	8629	25	25	23	25	2.00
6092468--6092523	26	2.2	26	93	0	94	26	23	19	30	1.98
6092497--6094698	735	3.1	709	85	6	2838	25	23	23	26	2.00
6093891--6097380	900	3.9	889	82	7	3940	25	25	23	25	2.00
6096590--6096645	26	2.2	26	96	0	103	28	23	19	28	1.98
6098195--6098246	26	2.0	26	92	0	86	28	23	19	28	1.98
6099079--6099128	26	1.9	26	95	0	91	28	26	18	28	1.98
6097478--6099523	886	2.3	891	84	7	2692	26	24	22	25	2.00
6100568--6100621	26	2.1	26	100	0	108	27	25	20	25	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120