genome.fa.s146.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  37  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4086362--4086491	45	2.9	45	81	5	122	20	31	30	17	1.95
4092798--4092904	45	2.4	43	78	9	115	15	29	35	18	1.93
4093359--4093411	26	2.0	26	88	0	79	30	18	24	26	1.98
4093543--4094013	196	2.4	196	81	3	518	24	26	26	22	2.00
4093911--4093963	26	2.0	26	89	7	81	28	20	24	26	1.99
4094463--4094517	23	2.4	23	93	0	92	23	16	36	23	1.94
4094548--4094647	45	2.2	45	81	0	110	14	33	34	19	1.91
4094563--4094717	45	3.4	45	77	0	157	18	32	29	18	1.95
4095501--4095555	25	2.2	26	86	3	76	23	18	23	34	1.96
4096395--4096419	13	1.9	13	100	0	50	16	16	44	24	1.86
4097483--4097535	26	2.0	26	96	0	97	24	20	28	26	1.99
4097781--4097818	20	1.9	20	100	0	76	15	23	34	26	1.95
4098251--4098276	10	2.6	10	100	0	52	19	19	30	30	1.96
4104504--4104621	45	2.6	45	82	2	121	19	30	29	20	1.97
4105111--4105163	26	2.0	26	85	0	70	26	16	24	32	1.97
4105455--4105507	26	2.0	26	88	0	79	26	16	28	28	1.97
4107944--4108051	45	2.4	45	79	0	126	18	33	29	18	1.95
4109040--4109290	136	1.8	136	79	3	290	24	24	29	21	1.99
4109167--4109547	159	2.4	159	86	4	509	23	28	27	19	1.99
4109257--4109610	159	2.2	159	83	5	385	21	30	27	20	1.98
4109656--4109708	26	2.0	26	92	0	88	30	20	22	26	1.98
4111198--4111250	26	2.0	26	85	0	70	26	16	24	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4111360--4111414	26	2.1	26	89	0	83	18	34	18	29	1.94
4117772--4117824	26	2.0	26	85	0	70	30	18	20	30	1.97
4118453--4118553	45	2.2	45	92	0	166	18	32	23	24	1.97
4120436--4120542	45	2.4	45	82	3	126	18	31	28	20	1.96
4121678--4121710	11	3.0	11	90	0	57	18	33	27	21	1.96
4121883--4122088	45	4.6	45	75	3	146	16	32	30	20	1.95
4122841--4122893	26	2.0	26	88	0	79	24	16	28	30	1.97
4123847--4123986	45	3.1	45	77	3	147	19	28	31	20	1.97
4124775--4124827	26	2.0	26	86	13	74	22	16	30	30	1.96
4124638--4124997	196	1.8	196	79	2	418	22	27	27	22	1.99
4125759--4125906	45	3.3	45	80	3	181	16	33	31	17	1.93
4127030--4127142	45	2.5	45	80	0	118	21	28	29	21	1.98
4127938--4127987	26	2.0	26	88	4	75	26	18	26	30	1.98
4128624--4128655	13	2.5	13	100	0	64	31	34	15	18	1.93
4128917--4129055	45	3.1	44	73	8	118	18	32	29	19	1.96
4129435--4129498	25	2.6	25	97	0	119	29	20	26	23	1.99
4129806--4129858	26	2.0	26	88	0	79	26	18	26	28	1.98
4131446--4131496	26	2.0	26	88	0	75	29	15	23	31	1.95
4131803--4131880	26	3.0	26	90	0	129	26	17	26	28	1.98
4132024--4132079	26	2.2	26	93	6	96	26	19	25	28	1.99
4131640--4132079	222	2.0	222	85	3	607	23	27	26	22	1.99
4131828--4132225	196	2.0	196	81	3	462	23	28	26	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4132983--4133222	45	5.3	44	73	7	162	17	33	28	20	1.95
4133627--4133679	26	2.0	26	96	0	97	26	18	26	28	1.98
4133652--4134142	170	3.0	167	79	6	466	22	30	28	19	1.98
4140817--4140956	45	3.1	43	74	11	111	22	32	28	17	1.96
4141398--4141450	26	2.0	26	92	0	88	26	16	26	30	1.97
4141753--4141805	26	2.0	26	92	0	88	24	18	28	28	1.98
4142709--4142906	45	4.4	45	77	2	175	18	33	29	18	1.95
4145351--4145464	44	2.6	45	76	6	115	21	29	28	21	1.98
4145903--4145955	26	2.0	26	92	0	88	28	18	24	28	1.98
4145928--4146292	159	2.3	158	81	4	396	25	29	24	19	1.98
4145998--4146357	159	2.3	159	78	6	424	24	30	26	19	1.98
4146406--4146458	26	2.0	26	96	0	97	24	20	28	26	1.99
4147040--4147287	136	1.8	136	83	1	327	23	27	28	20	1.99
4147496--4147548	26	2.0	26	92	0	88	24	20	30	24	1.99
4148491--4148739	45	5.5	44	80	5	230	16	31	30	20	1.95
4149182--4149234	26	2.0	26	92	0	88	28	16	26	28	1.97
4149539--4149591	26	2.0	26	96	0	97	24	20	28	26	1.99
4150522--4150627	45	2.4	45	78	0	113	17	31	31	19	1.96
4151630--4151837	45	4.6	45	74	4	161	19	32	27	20	1.97
4151630--4151793	90	1.8	90	81	2	204	18	31	28	20	1.97
4152409--4152534	45	2.8	45	87	0	153	23	30	24	21	1.99
4152461--4152563	45	2.3	45	87	0	143	26	33	24	16	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4151101--4152617	776	2.0	774	86	2	2157	25	25	24	24	2.00
4153038--4153090	26	2.0	26	96	0	97	26	18	26	28	1.98
4153063--4153481	159	2.6	159	79	2	457	25	27	27	19	1.98
4153555--4153605	26	2.0	26	88	0	75	25	15	29	29	1.96
4154535--4154735	45	4.5	44	74	3	159	19	31	28	20	1.97
4154562--4154735	90	1.9	89	84	1	231	18	29	29	21	1.97
4156501--4156701	45	4.5	45	71	5	136	20	31	27	19	1.97
4157146--4157196	25	2.0	26	92	3	86	29	17	23	29	1.97
4157413--4157465	26	2.0	26	88	0	79	24	18	30	26	1.98
4158418--4158528	45	2.5	45	86	2	143	20	33	27	18	1.96
4159326--4159377	26	2.0	26	88	0	77	25	13	26	34	1.93
4159626--4159678	26	2.0	26	85	7	72	30	18	24	26	1.98
4159822--4159926	26	4.0	26	98	0	201	23	20	29	26	1.99
4160964--4161015	26	2.0	26	92	0	86	25	17	28	28	1.97
4161858--4161882	13	1.9	13	100	0	50	24	16	36	24	1.94
4161913--4162036	45	2.8	45	84	0	140	16	31	32	20	1.94
4161951--4162129	45	4.0	45	81	2	198	17	32	31	18	1.95
4162581--4162633	26	2.0	26	96	0	97	26	18	26	28	1.98
4162936--4162988	26	2.0	26	92	0	88	30	16	20	32	1.95
4163300--4163397	45	2.2	45	86	0	133	18	32	31	17	1.94
4163313--4163467	45	3.4	45	83	1	195	18	32	30	18	1.95
4164065--4164219	45	3.4	45	76	0	166	21	33	29	16	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4163168--4165150	751	2.6	748	88	2	2830	22	30	26	20	1.98
4164813--4164970	45	3.5	44	80	3	172	19	32	28	18	1.96
4165468--4165520	26	2.0	26	92	0	88	28	20	22	28	1.99
4165822--4165874	26	2.0	26	88	0	79	26	18	26	28	1.98
4166829--4166974	45	3.2	45	84	0	193	19	31	30	17	1.95
4166805--4166974	45	3.8	45	80	0	178	19	30	30	19	1.96
4167775--4167848	26	2.8	26	93	0	130	24	18	29	27	1.98
4169719--4169771	26	2.0	26	100	0	106	26	20	26	26	1.99
4171989--4172030	12	3.5	12	83	0	57	7	38	26	28	1.82
4171989--4172037	24	2.0	24	92	0	80	8	36	24	30	1.85
4171998--4172037	12	3.3	12	82	0	53	7	37	22	32	1.82
4172066--4172118	26	2.0	26	92	0	88	24	20	26	28	1.99
4173013--4173181	45	3.8	45	76	3	160	17	28	31	22	1.96
4175010--4175190	45	4.0	45	81	1	202	17	31	32	19	1.95
4175019--4175188	90	1.9	90	85	2	234	17	31	31	19	1.95
4176837--4177008	45	3.8	45	74	4	150	17	30	31	20	1.95
4176839--4177006	90	1.9	90	82	2	212	17	30	31	19	1.95
4177134--4177184	26	2.0	26	96	0	93	27	19	25	27	1.99
4178125--4178371	45	5.5	44	77	4	226	17	29	31	21	1.96
4178108--4178361	89	2.8	90	85	1	321	16	30	32	21	1.95
4178125--4178374	134	1.9	134	82	3	315	17	30	31	21	1.96
4179131--4179484	196	1.8	196	80	4	428	22	30	27	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4180296--4180453	45	3.5	45	82	0	190	18	31	31	18	1.95
4181034--4181086	26	2.0	26	92	0	88	26	20	24	28	1.99
4181389--4181441	26	2.0	26	89	7	81	24	22	26	26	2.00
4182402--4182574	90	1.9	89	80	3	195	17	28	32	20	1.96
4182422--4182578	45	3.5	44	74	5	127	19	29	29	21	1.97
4183304--4183356	26	2.0	26	85	0	70	28	20	26	24	1.99
4183660--4183715	26	2.2	26	93	0	94	26	19	25	28	1.99
4184640--4184796	45	3.5	45	78	4	156	17	33	28	19	1.95
4186083--4186135	26	2.0	26	92	7	90	26	20	22	30	1.98
4189958--4190404	226	2.0	226	95	0	804	26	25	20	27	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120