genome.fa.s146.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  113  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16858119--16858212	35	2.6	38	82	14	119	52	2	1	44	1.20
16861855--16861935	28	2.9	28	79	3	92	38	7	20	33	1.81
16861858--16861933	27	2.8	28	79	4	82	38	7	21	32	1.82
16862548--16862581	3	11.7	3	93	6	61	29	0	0	70	0.87
16862564--16862669	42	2.4	43	74	13	101	24	7	6	61	1.47
16862933--16862985	25	2.2	25	90	10	83	43	7	16	32	1.76
16863053--16863092	19	2.1	19	90	0	62	25	32	22	20	1.98
16863116--16863166	20	2.6	19	81	9	66	27	25	23	23	2.00
16863600--16863993	59	6.7	58	84	6	483	44	8	13	33	1.73
16863603--16863993	116	3.3	113	81	11	466	44	8	13	33	1.74
16863602--16863993	57	6.7	57	81	9	429	44	8	13	33	1.74
16867160--16867204	15	3.0	15	93	0	81	24	26	2	46	1.64
16873609--16873642	17	1.9	18	88	5	52	44	11	17	26	1.83
16873644--16873742	9	11.2	9	80	13	91	74	0	14	11	1.07
16873645--16873742	8	11.2	8	79	17	81	74	0	14	11	1.07
16874756--16875331	41	14.0	41	89	6	837	22	17	22	36	1.94
16874756--16875331	83	7.0	81	90	5	831	22	17	22	36	1.94
16875338--16875437	1	100.0	1	73	0	74	86	7	0	7	0.72
16875340--16875431	46	1.9	49	89	6	145	85	7	0	6	0.73
16875338--16875437	38	2.7	37	85	11	134	86	7	0	7	0.72
16875338--16875437	14	6.8	14	78	16	96	86	7	0	7	0.72
16875759--16875792	3	11.7	3	93	6	61	29	0	0	70	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16875775--16875881	42	2.4	44	76	10	112	24	7	6	61	1.46
16876145--16876198	26	2.2	25	86	6	74	40	7	18	33	1.78
16876207--16876277	31	2.3	31	80	0	79	25	23	23	26	2.00
16876266--16876306	19	2.1	20	90	4	66	26	31	21	19	1.97
16876310--16876349	11	3.7	11	83	6	55	17	35	27	20	1.95
16876340--16876391	20	2.6	19	88	8	77	26	26	23	23	2.00
16876820--16877232	59	6.9	58	85	6	524	45	7	13	33	1.73
16876836--16877232	116	3.4	115	85	6	519	44	8	13	33	1.74
16890765--16890796	16	2.0	16	93	0	55	21	0	0	78	0.76
16894035--16894085	24	2.1	24	96	0	93	35	7	21	35	1.83
16898780--16898807	2	14.0	2	100	0	56	50	0	0	50	1.00
16906092--16906136	23	2.0	23	95	0	81	17	15	8	57	1.63
16909583--16909646	5	13.0	5	75	18	55	39	0	0	60	0.97
16909584--16909649	32	2.1	32	88	5	98	37	0	0	62	0.96
16910246--16910273	10	2.8	10	100	0	56	39	10	0	50	1.37
16915326--16915370	2	22.5	2	81	0	54	44	4	2	48	1.35
16925607--16925644	12	3.2	12	82	14	51	50	15	0	34	1.45
16925640--16925670	6	5.2	6	92	0	53	35	0	12	51	1.40
16936503--16936555	24	2.2	24	80	9	65	62	1	0	35	1.06
16936512--16936552	13	3.2	13	76	16	50	58	2	0	39	1.11
16940645--16940694	15	3.5	14	75	21	50	76	2	0	22	0.89
16941218--16941265	11	4.2	11	74	10	51	6	0	12	81	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16941836--16942032	44	4.4	43	80	5	205	41	16	13	29	1.86
16941862--16942031	88	1.9	88	87	2	252	42	15	12	28	1.85
16942015--16942332	47	6.7	47	77	10	288	40	18	10	30	1.84
16942018--16942332	95	3.3	95	83	5	354	40	18	10	30	1.84
16942018--16942339	145	2.3	143	82	4	382	40	18	10	30	1.84
16943651--16944014	192	1.9	192	95	2	669	30	14	14	40	1.86
16944660--16945030	184	2.0	184	96	0	679	29	16	14	39	1.88
16955091--16955167	24	3.2	24	72	5	59	44	6	0	49	1.28
16955753--16955803	23	2.3	22	83	12	61	5	0	13	80	0.89
16955762--16955807	5	9.4	5	81	11	51	2	0	17	80	0.81
16955756--16955807	19	2.6	19	87	6	68	3	0	15	80	0.85
16955777--16955815	19	2.1	19	85	0	51	0	2	20	76	0.90
16978308--16978383	25	3.0	25	92	0	134	36	13	22	27	1.91
16985935--16985976	22	1.9	22	90	0	66	45	9	11	33	1.73
16989616--16989677	26	2.4	25	86	2	79	40	14	27	17	1.89
16989888--16989930	22	2.0	22	90	0	68	44	6	11	37	1.68
16994329--16994364	2	18.0	2	100	0	72	50	0	0	50	1.00
16994862--16994888	4	6.8	4	100	0	54	74	25	0	0	0.83
16999726--16999762	3	12.3	3	100	0	74	32	0	0	67	0.91
17003385--17003426	18	2.3	18	80	12	50	28	0	11	59	1.33
17008666--17009658	466	2.1	481	82	9	1182	35	11	8	44	1.71
17009685--17009741	16	3.5	16	75	11	53	28	0	3	68	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17010444--17010504	29	2.2	26	82	8	68	9	0	19	70	1.15
17010899--17010934	3	12.0	3	93	0	63	66	2	0	30	1.06
17011172--17011256	43	1.9	45	90	4	138	38	15	14	31	1.87
17016581--17016614	2	17.5	2	93	6	61	47	0	0	52	1.00
17028379--17028472	41	2.3	41	85	1	127	47	12	5	34	1.64
17033026--17033081	26	2.2	26	90	0	85	51	5	1	41	1.35
17038357--17038412	26	2.2	26	86	0	76	51	3	1	42	1.29
17039295--17039340	20	2.2	20	85	14	58	30	0	2	67	1.03
17040452--17040487	14	2.6	14	86	0	54	36	0	22	41	1.54
17053900--17053926	14	1.9	14	100	0	54	25	0	0	74	0.83
17053954--17053987	7	4.9	7	88	0	50	50	0	0	50	1.00
17066749--17066777	13	2.2	13	100	0	58	31	13	31	24	1.94
17076009--17076038	2	15.0	2	100	0	60	50	0	0	50	1.00
17077255--17077302	18	2.6	18	71	15	53	12	20	0	66	1.24
17077806--17078020	104	2.1	102	84	1	277	46	4	6	42	1.49
17091452--17091501	23	2.2	23	82	3	66	46	6	0	48	1.27
17091458--17091500	23	1.9	22	90	4	68	39	6	0	53	1.28
17092165--17092208	21	2.0	22	86	4	63	59	4	22	13	1.53
17093295--17093347	17	3.1	17	88	0	70	43	0	3	52	1.19
17093368--17093435	24	2.8	24	78	10	75	45	0	2	51	1.16
17093551--17093609	31	1.9	31	82	6	75	44	6	30	18	1.76
17093453--17093765	168	1.9	169	83	0	412	42	11	17	28	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17093999--17094035	17	2.2	17	100	0	74	37	10	0	51	1.37
17094163--17094221	30	2.0	30	83	6	75	32	15	3	49	1.61
17094374--17094426	16	3.2	16	81	10	54	67	0	0	32	0.91
17094381--17094426	16	2.9	16	90	3	67	67	0	0	32	0.91
17094680--17094718	20	1.9	20	89	5	60	30	0	2	66	1.05
17095899--17095926	2	14.0	2	100	0	56	50	0	0	50	1.00
17097358--17097422	32	2.0	32	84	0	85	43	6	10	40	1.65
17098508--17098546	20	2.0	20	84	0	51	23	2	5	69	1.21
17098709--17098867	15	10.1	15	69	19	69	55	1	1	41	1.19
17098711--17098796	23	3.8	23	86	4	113	56	0	3	39	1.16
17098711--17098869	41	3.8	41	72	17	110	56	1	1	40	1.18
17098825--17098866	18	2.3	19	84	12	61	59	2	0	38	1.10
17098711--17098869	26	6.6	23	70	23	96	56	1	1	40	1.18
17098896--17098952	19	2.7	21	74	15	55	40	1	1	56	1.20
17099030--17099059	16	1.9	16	93	6	53	63	3	0	33	1.11
17100087--17100170	10	8.6	10	72	15	50	32	3	4	59	1.35
17100683--17100708	9	2.9	9	100	0	52	76	0	0	23	0.78
17109175--17109241	29	2.5	26	76	19	73	56	0	2	40	1.14
17109147--17109243	33	2.9	32	78	15	99	56	1	2	40	1.18
17109258--17109314	21	2.8	21	82	10	66	50	1	0	47	1.11
17109397--17109462	23	2.8	24	82	11	73	50	1	0	48	1.10
17109601--17109662	33	1.9	32	84	15	83	46	1	1	50	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17111756--17111814	28	2.0	29	81	12	68	49	0	1	49	1.11
17111749--17111921	95	1.8	92	81	7	213	49	2	2	46	1.27
17111979--17112045	22	3.0	22	71	0	62	38	2	5	52	1.41
17112497--17112549	17	3.2	17	75	2	54	43	1	1	52	1.23
17119246--17119275	9	3.4	9	90	9	53	80	0	0	20	0.72
17126486--17126516	16	1.9	16	93	0	53	32	0	0	67	0.91
17126498--17126571	20	3.6	19	73	12	58	40	0	0	59	0.97
17126498--17126570	21	3.5	21	80	12	71	41	0	0	58	0.98
17126522--17126570	21	2.2	23	89	7	75	44	0	0	55	0.99
17145651--17145695	19	2.2	21	77	18	51	66	0	2	31	1.04

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120