genome.fa.s146.2.7.7.80.10.50.1000.79.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19268551

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   

This is table  79  of  120  ( 14389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10112130--10112175	22	2.1	22	91	0	74	43	30	0	26	1.55
10114279--10114314	12	3.0	12	95	0	63	61	0	0	38	0.96
10116718--10116745	3	9.3	3	100	0	56	35	0	0	64	0.94
10117889--10117957	32	2.2	32	100	0	138	55	13	0	31	1.38
10127466--10127529	33	2.0	32	87	3	92	43	1	4	50	1.32
10127953--10128004	21	2.5	21	90	6	79	50	0	0	50	1.00
10127953--10128004	22	2.5	22	93	6	90	50	0	0	50	1.00
10134075--10134128	27	2.0	27	85	3	74	61	1	0	37	1.07
10139555--10139589	2	17.5	2	100	0	70	0	0	48	51	1.00
10144275--10144300	2	13.0	2	100	0	52	50	0	0	50	1.00
10144565--10144596	2	16.0	2	100	0	64	50	0	0	50	1.00
10145289--10145314	2	13.0	2	100	0	52	0	50	0	50	1.00
10150879--10150905	2	13.5	2	100	0	54	51	0	0	48	1.00
10153499--10153554	26	2.1	27	84	15	73	53	5	10	30	1.58
10156766--10157010	121	2.0	122	91	0	402	25	6	23	44	1.78
10170912--10170983	21	3.4	21	78	1	81	19	4	4	72	1.18
10171206--10171254	20	2.4	20	86	3	62	32	6	6	55	1.49
10171222--10171260	20	2.0	20	89	0	60	28	5	2	64	1.28
10171222--10171268	20	2.3	20	85	3	58	27	4	2	65	1.22
10172141--10172170	14	2.1	14	93	0	51	56	3	33	6	1.42
10172417--10172442	13	2.0	13	100	0	52	0	23	0	76	0.78
10183427--10183494	22	3.1	22	74	16	61	51	1	1	45	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10183991--10184023	17	2.0	17	88	5	50	21	3	0	75	0.93
10184225--10184262	20	1.9	19	89	5	58	31	0	0	68	0.90
10184603--10184665	29	2.1	29	82	11	74	49	1	1	47	1.20
10189859--10189894	18	2.0	18	94	0	63	30	0	0	69	0.89
10190399--10190428	11	2.7	11	94	0	51	56	0	0	43	0.99
10190396--10190453	23	2.4	23	80	5	62	56	0	0	43	0.99
10190396--10190440	25	1.9	24	82	13	58	62	0	0	37	0.96
10190427--10190492	30	2.2	30	78	5	71	53	0	3	43	1.16
10191885--10191932	25	2.0	24	84	12	62	81	6	2	10	0.95
10193672--10193700	2	14.5	2	100	0	58	51	0	0	48	1.00
10195237--10196019	392	2.0	388	82	4	959	39	4	15	39	1.69
10196141--10196201	25	2.5	24	82	17	65	39	6	16	37	1.75
10200141--10200185	21	2.1	21	84	8	56	26	4	42	26	1.74
10202580--10202613	16	2.1	16	94	0	59	47	0	5	47	1.26
10202591--10202637	19	2.5	17	81	18	58	42	2	2	53	1.25
10202694--10202749	20	2.8	19	84	7	76	60	0	0	39	0.97
10206304--10206337	2	17.0	2	100	0	68	50	0	0	50	1.00
10206974--10207008	9	3.9	9	84	0	52	40	14	2	42	1.60
10207124--10207186	10	6.3	10	78	10	58	31	3	0	65	1.09
10207134--10207202	36	1.9	36	82	11	88	36	1	0	62	1.04
10207715--10207768	22	2.5	22	75	6	56	46	7	1	44	1.42
10207764--10207824	28	2.2	29	91	5	99	59	1	3	36	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10207765--10207832	28	2.4	29	85	2	84	60	1	2	35	1.21
10207810--10207860	17	3.0	17	82	0	66	66	5	1	25	1.24
10207871--10207907	19	1.9	19	94	0	65	70	8	0	21	1.13
10207973--10208040	35	1.9	34	85	14	93	64	1	2	30	1.17
10208085--10208122	18	2.1	18	90	0	58	55	7	2	34	1.43
10208232--10208271	19	2.2	18	86	4	53	40	2	0	57	1.12
10208350--10208400	17	2.9	17	78	18	52	33	7	1	56	1.39
10209107--10209198	30	3.1	30	74	1	87	31	5	8	54	1.54
10211399--10211453	28	1.9	30	85	7	78	30	1	23	43	1.64
10211919--10211954	13	2.8	13	86	0	54	27	5	2	63	1.30
10212819--10212859	22	1.9	21	90	5	64	75	0	0	24	0.80
10213445--10213479	2	17.5	2	100	0	70	48	0	0	51	1.00
10213576--10213652	29	2.6	27	81	18	84	54	1	0	44	1.08
10213983--10214023	18	2.3	19	79	8	50	73	2	12	12	1.20
10213964--10214010	25	1.9	25	91	4	78	70	0	12	17	1.17
10215948--10215994	20	2.4	20	75	3	51	53	2	6	38	1.39
10218444--10218474	16	1.9	16	93	0	53	54	0	6	38	1.26
10221794--10221836	20	2.2	20	86	0	59	32	4	11	51	1.59
10221837--10221879	12	3.5	12	77	3	50	30	9	13	46	1.75
10221910--10221995	37	2.3	37	85	2	118	25	11	11	51	1.72
10229378--10229407	15	1.9	16	93	6	53	20	0	13	66	1.24
10231723--10231786	11	5.9	11	77	15	71	21	0	28	50	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10231714--10231760	20	2.3	20	88	0	76	21	2	34	42	1.65
10233234--10233649	207	2.0	207	92	1	692	39	12	18	29	1.87
10233860--10234082	113	2.0	113	89	0	338	40	8	19	31	1.80
10236825--10236917	9	11.0	9	70	17	56	26	22	7	43	1.80
10236846--10236951	34	3.4	34	62	32	85	27	21	8	42	1.82
10236825--10236965	57	2.5	57	94	2	248	26	21	8	43	1.81
10237267--10237426	51	3.2	50	79	2	194	26	8	17	47	1.76
10237420--10237521	43	2.4	44	85	3	127	33	6	14	45	1.72
10237808--10237846	15	2.7	14	88	11	53	20	0	7	71	1.10
10238321--10238364	23	1.9	24	81	9	56	13	2	13	70	1.26
10238972--10239042	31	2.3	32	78	7	83	29	5	12	52	1.62
10239003--10239130	45	2.9	44	83	8	161	29	4	9	56	1.51
10239043--10239101	15	3.9	15	70	16	50	30	6	8	54	1.57
10239112--10239191	37	2.1	36	80	8	88	20	7	16	56	1.64
10239214--10239269	27	2.2	25	84	12	69	25	5	8	60	1.47
10248486--10248581	30	3.2	30	90	1	138	35	17	21	25	1.95
10249090--10249141	22	2.3	23	80	6	61	34	3	0	61	1.14
10251079--10251119	10	4.2	10	81	12	50	63	7	0	29	1.21
10251362--10251419	26	2.2	26	78	0	62	29	3	0	67	1.07
10251403--10251468	19	3.3	21	83	6	66	30	0	6	63	1.18
10251415--10251470	21	2.8	20	74	10	53	30	0	7	62	1.22
10251824--10251872	19	2.7	18	87	6	71	44	0	2	53	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10251824--10251869	9	5.0	9	78	21	51	45	0	2	52	1.13
10252003--10252027	12	2.1	12	100	0	50	60	8	0	32	1.26
10255694--10255740	24	1.9	25	95	4	87	59	0	0	40	0.97
10255722--10255749	14	2.0	14	100	0	56	57	0	0	42	0.99
10258600--10258643	22	2.0	22	95	0	79	43	13	11	31	1.80
10267165--10267209	20	2.2	21	92	4	74	55	2	4	37	1.32
10268139--10268203	23	2.7	24	77	17	80	33	4	13	47	1.64
10279368--10279399	11	2.8	12	95	4	57	65	0	0	34	0.93
10279601--10279643	21	2.2	19	87	8	59	23	2	2	72	1.08
10280192--10280252	32	1.9	30	84	15	79	50	0	8	40	1.32
10282650--10282715	22	3.0	22	84	6	80	80	10	1	7	0.97
10284455--10284494	19	2.0	20	86	13	57	62	12	10	15	1.54
10284673--10284717	18	2.7	18	80	10	51	75	11	6	6	1.18
10286603--10286635	17	1.9	17	93	0	57	42	0	3	54	1.15
10285987--10287414	473	3.0	477	94	1	2517	35	14	11	39	1.81
10293639--10293697	29	2.0	29	83	6	75	23	1	3	71	1.11
10294447--10294495	24	2.0	24	100	0	98	46	12	0	40	1.41
10297392--10297521	62	2.1	62	94	1	226	45	14	4	35	1.66
10297703--10297753	19	2.7	19	74	17	52	50	0	1	47	1.12
10300263--10300335	33	2.2	33	83	7	87	46	17	0	35	1.49
10300285--10300335	11	4.6	11	73	9	50	49	15	0	35	1.45
10304781--10304831	11	4.6	11	73	9	50	49	13	0	37	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10304872--10304913	11	3.8	11	75	12	50	47	11	7	33	1.68
10307175--10307839	207	3.3	200	84	5	820	40	12	16	31	1.85
10309559--10309639	42	1.9	42	82	0	99	40	13	16	29	1.86
10310359--10310385	7	3.9	7	100	0	54	14	0	0	85	0.61
10316896--10316930	18	1.9	18	88	0	52	17	2	2	77	1.02
10316888--10316956	12	6.0	11	75	20	52	20	1	1	76	0.94
10316901--10316956	18	3.3	17	80	14	62	21	1	1	75	0.99
10316918--10316955	15	2.5	16	87	12	62	26	0	0	73	0.83
10317048--10317103	10	6.1	10	68	19	50	50	0	0	50	1.00
10318422--10318463	16	2.6	17	81	11	52	23	2	0	73	0.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120